Wall clock time and date at job start Tue Mar 31 2020 05:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47244 * 2 1 4 4 C 1.50700 * 109.47048 * 119.99360 * 2 1 3 5 5 H 1.08001 * 119.99808 * 117.00915 * 4 2 1 6 6 C 1.37878 * 120.00268 * 297.01251 * 4 2 1 7 7 N 1.31516 * 119.99685 * 5.53723 * 6 4 2 8 8 Si 1.86800 * 120.00062 * 185.54222 * 6 4 2 9 9 H 1.48497 * 109.47346 * 84.99865 * 8 6 4 10 10 H 1.48501 * 109.46857 * 204.99918 * 8 6 4 11 11 H 1.48501 * 109.46906 * 324.99610 * 8 6 4 12 12 C 1.53000 * 109.47591 * 239.99475 * 2 1 3 13 13 N 1.46500 * 109.46782 * 60.00420 * 12 2 1 14 14 C 1.34775 * 119.99999 * 180.02562 * 13 12 2 15 15 O 1.21282 * 120.00026 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00235 * 179.97438 * 14 13 12 17 17 C 1.53007 * 109.47268 * 179.97438 * 16 14 13 18 18 H 1.08998 * 109.46464 * 305.00202 * 17 16 14 19 19 C 1.52995 * 109.46927 * 65.00125 * 17 16 14 20 20 C 1.53000 * 109.46983 * 179.97438 * 19 17 16 21 21 C 1.52991 * 109.47313 * 300.00286 * 20 19 17 22 22 C 1.53004 * 109.47398 * 59.99982 * 21 20 19 23 23 C 1.52999 * 109.46688 * 185.00393 * 17 16 14 24 24 H 1.08995 * 109.47113 * 299.99473 * 23 17 16 25 25 O 1.42895 * 109.47526 * 60.00307 * 23 17 16 26 26 H 1.09003 * 109.47337 * 300.00799 * 1 2 3 27 27 H 1.09000 * 109.46917 * 60.00479 * 1 2 3 28 28 H 1.08997 * 109.46812 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47495 * 173.93456 * 3 2 1 30 30 H 1.09007 * 109.46996 * 293.92866 * 3 2 1 31 31 H 1.08993 * 109.47558 * 53.92698 * 3 2 1 32 32 H 0.96998 * 119.99757 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.47174 * 180.02562 * 12 2 1 34 34 H 1.08995 * 109.47025 * 300.00461 * 12 2 1 35 35 H 0.97002 * 120.00142 * 359.97438 * 13 12 2 36 36 H 1.08999 * 109.47381 * 299.99907 * 16 14 13 37 37 H 1.09005 * 109.46794 * 60.00269 * 16 14 13 38 38 H 1.09004 * 109.47222 * 299.99999 * 19 17 16 39 39 H 1.09003 * 109.47220 * 60.00024 * 19 17 16 40 40 H 1.09000 * 109.47036 * 60.00602 * 20 19 17 41 41 H 1.09000 * 109.47049 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.47053 * 179.97438 * 21 20 19 43 43 H 1.09000 * 109.47328 * 300.00137 * 21 20 19 44 44 H 1.09000 * 109.46755 * 59.99804 * 22 21 20 45 45 H 1.08995 * 109.47561 * 180.02562 * 22 21 20 46 46 H 0.96705 * 114.00188 * 179.97438 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6127 -1.6157 1.1323 6 6 1.7508 -0.2043 2.4818 7 7 0.9543 0.8347 2.6070 8 14 2.5009 -0.9944 3.9993 9 1 3.8550 -0.4313 4.2325 10 1 1.6404 -0.7184 5.1776 11 1 2.6034 -2.4615 3.7939 12 6 2.0401 -0.7213 -1.2491 13 7 1.5519 -0.0307 -2.4454 14 6 1.8771 -0.4915 -3.6694 15 8 2.5744 -1.4776 -3.7806 16 6 1.3744 0.2185 -4.9000 17 6 1.8846 -0.5028 -6.1492 18 1 2.9710 -0.5805 -6.1055 19 6 1.2751 -1.9046 -6.2134 20 6 1.7848 -2.6256 -7.4629 21 6 1.3792 -1.8356 -8.7087 22 6 1.9888 -0.4337 -8.6445 23 6 1.4795 0.2872 -7.3953 24 1 0.3932 0.3650 -7.4389 25 8 2.0489 1.5964 -7.3353 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1246 1.4445 0.1086 30 1 1.7681 1.9240 -0.9394 31 1 1.5907 1.9868 0.8305 32 1 0.7565 1.1909 3.4873 33 1 3.1301 -0.7217 -1.2488 34 1 1.6767 -1.7489 -1.2491 35 1 0.9939 0.7577 -2.3564 36 1 0.2844 0.2185 -4.8997 37 1 1.7378 1.2462 -4.9003 38 1 1.5637 -2.4673 -5.3256 39 1 0.1887 -1.8268 -6.2570 40 1 2.8711 -2.7035 -7.4197 41 1 1.3508 -3.6245 -7.5084 42 1 1.7427 -2.3490 -9.5988 43 1 0.2929 -1.7577 -8.7519 44 1 3.0752 -0.5116 -8.6013 45 1 1.6995 0.1293 -9.5318 46 1 1.8333 2.1543 -8.0953 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458046809.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:32 Heat of formation + Delta-G solvation = -125.163610 kcal Electronic energy + Delta-G solvation = -23224.364351 eV Core-core repulsion = 19919.384072 eV Total energy + Delta-G solvation = -3304.980279 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.93785 -38.57066 -36.35059 -35.61706 -33.20431 -32.61930 -30.83196 -29.77051 -27.31829 -25.70693 -25.44058 -24.51239 -22.76759 -21.65529 -20.02609 -19.74496 -18.72214 -17.39214 -16.80208 -15.75032 -15.57887 -15.18323 -14.89977 -14.66268 -14.48833 -13.97621 -13.94104 -13.24422 -13.03419 -13.01108 -12.75481 -12.51372 -12.23185 -12.05953 -11.67124 -11.46877 -11.33806 -11.16771 -11.05789 -10.84309 -10.78054 -10.67532 -10.47778 -10.36982 -10.26748 -10.18786 -9.94531 -9.59926 -9.41966 -9.09729 -8.76399 -8.40759 -8.24016 -6.00998 -4.09743 3.16409 3.30076 3.36386 3.39847 3.81624 4.03532 4.41665 4.50458 4.59652 4.82314 4.98301 5.06193 5.17967 5.21528 5.26090 5.28941 5.36788 5.51782 5.61013 5.62584 5.81895 5.83957 5.93660 6.05801 6.10565 6.15206 6.28564 6.36811 6.42166 6.45806 6.54635 6.83044 6.84913 6.96660 7.04442 7.11034 7.38469 7.49087 7.58080 7.71818 8.01728 8.11264 8.20526 8.40710 8.80323 8.91263 9.55611 11.01056 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.036274 B = 0.003208 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.715056 B = 8726.159878 C = 9108.629734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.508 4.508 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.892 3.108 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.132 3.868 13 N -0.719 5.719 14 C 0.504 3.496 15 O -0.553 6.553 16 C -0.136 4.136 17 C -0.059 4.059 18 H 0.084 0.916 19 C -0.120 4.120 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.150 4.150 23 C 0.108 3.892 24 H 0.054 0.946 25 O -0.565 6.565 26 H 0.085 0.915 27 H 0.006 0.994 28 H 0.026 0.974 29 H 0.029 0.971 30 H 0.007 0.993 31 H 0.081 0.919 32 H 0.260 0.740 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.397 0.603 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.055 0.945 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.334 0.525 -20.635 20.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.720 3.280 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.200 1.200 12 C 0.009 3.991 13 N -0.369 5.369 14 C 0.290 3.710 15 O -0.432 6.432 16 C -0.176 4.176 17 C -0.078 4.078 18 H 0.102 0.898 19 C -0.157 4.157 20 C -0.158 4.158 21 C -0.155 4.155 22 C -0.188 4.188 23 C 0.049 3.951 24 H 0.072 0.928 25 O -0.370 6.370 26 H 0.104 0.896 27 H 0.024 0.976 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.026 0.974 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.232 0.768 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -1.683 -0.303 -19.966 20.039 hybrid contribution -0.126 0.249 0.362 0.457 sum -1.809 -0.053 -19.604 19.687 Atomic orbital electron populations 1.21841 0.97801 0.99103 1.00000 1.18351 0.92758 0.92738 0.90666 1.21802 0.99359 0.98512 0.98977 1.20986 1.33643 1.09989 0.90002 0.92471 1.24878 0.94708 0.95065 0.98793 1.69829 1.35167 1.24143 1.23260 0.86601 0.79183 0.79784 0.82387 1.20626 1.21342 1.19971 1.21665 0.98086 0.95694 0.83610 1.46355 1.52634 1.31779 1.06154 1.20603 0.80663 0.84782 0.84951 1.90614 1.38806 1.26859 1.86944 1.21678 1.01942 1.01243 0.92743 1.20833 1.02049 0.93785 0.91118 0.89794 1.21727 0.99400 0.95106 0.99495 1.21544 1.01420 0.98580 0.94209 1.21503 1.00525 0.95106 0.98349 1.22243 1.01888 0.96861 0.97783 1.21875 0.96003 0.82366 0.94822 0.92831 1.86557 1.77198 1.25018 1.48249 0.89628 0.97550 0.95516 0.95227 0.97408 0.90053 0.93032 0.92849 0.92888 0.76781 0.89611 0.88407 0.88880 0.92578 0.91782 0.91947 0.91995 0.92021 0.91095 0.92016 0.77954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.11 37.16 0.30 -2.65 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.95 8.03 37.16 0.30 -2.65 16 4 C -0.51 -13.47 8.01 -34.44 -0.28 -13.75 16 5 H 0.06 1.53 7.75 -52.49 -0.41 1.13 16 6 C 0.07 1.78 5.13 -17.82 -0.09 1.69 16 7 N -0.89 -23.82 9.45 55.43 0.52 -23.30 16 8 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.13 2.86 4.50 -4.04 -0.02 2.84 16 13 N -0.72 -13.00 4.90 -60.30 -0.30 -13.30 16 14 C 0.50 8.73 7.55 -10.99 -0.08 8.65 16 15 O -0.55 -11.27 13.96 5.56 0.08 -11.20 16 16 C -0.14 -1.79 5.10 -27.88 -0.14 -1.93 16 17 C -0.06 -0.73 1.58 -90.62 -0.14 -0.87 16 18 H 0.08 1.23 7.95 -51.93 -0.41 0.82 16 19 C -0.12 -1.44 4.94 -26.73 -0.13 -1.57 16 20 C -0.12 -1.21 5.92 -26.74 -0.16 -1.37 16 21 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 22 C -0.15 -1.25 5.54 -26.75 -0.15 -1.40 16 23 C 0.11 1.05 2.90 -26.75 -0.08 0.97 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 O -0.57 -5.63 12.56 -35.23 -0.44 -6.08 16 26 H 0.09 2.15 6.10 -51.93 -0.32 1.83 16 27 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.01 0.14 6.71 -51.93 -0.35 -0.21 16 31 H 0.08 2.03 6.25 -51.93 -0.32 1.71 16 32 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.40 6.53 6.16 -40.82 -0.25 6.28 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.10 1.26 7.54 -51.93 -0.39 0.87 16 38 H 0.09 1.40 5.95 -51.93 -0.31 1.09 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.37 2.08 9.08 45.56 0.41 2.49 16 LS Contribution 349.99 15.07 5.27 5.27 Total: -1.00 -29.31 349.99 -8.13 -37.44 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -7.33 Total: 7.21 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -0.91 Total: -11.94 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.23 Total: -36.59 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.36 Total: -17.27 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.31 -8.13 -37.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458046809.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.728 kcal (2) G-P(sol) polarization free energy of solvation -29.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds