Wall clock time and date at job start Tue Mar 31 2020 05:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47244 * 2 1 4 4 C 1.50700 * 109.47048 * 119.99360 * 2 1 3 5 5 H 1.08001 * 119.99808 * 117.00915 * 4 2 1 6 6 C 1.37878 * 120.00268 * 297.01251 * 4 2 1 7 7 N 1.31516 * 119.99685 * 5.53723 * 6 4 2 8 8 Si 1.86800 * 120.00062 * 185.54222 * 6 4 2 9 9 H 1.48497 * 109.47346 * 84.99865 * 8 6 4 10 10 H 1.48501 * 109.46857 * 204.99918 * 8 6 4 11 11 H 1.48501 * 109.46906 * 324.99610 * 8 6 4 12 12 C 1.53000 * 109.47591 * 239.99475 * 2 1 3 13 13 N 1.46500 * 109.46782 * 60.00420 * 12 2 1 14 14 C 1.34775 * 119.99999 * 180.02562 * 13 12 2 15 15 O 1.21282 * 120.00026 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00235 * 179.97438 * 14 13 12 17 17 C 1.53007 * 109.47268 * 179.97438 * 16 14 13 18 18 H 1.08998 * 109.46464 * 305.00202 * 17 16 14 19 19 C 1.52995 * 109.46927 * 65.00125 * 17 16 14 20 20 C 1.53000 * 109.46983 * 179.97438 * 19 17 16 21 21 C 1.52991 * 109.47313 * 300.00286 * 20 19 17 22 22 C 1.53004 * 109.47398 * 59.99982 * 21 20 19 23 23 C 1.52999 * 109.46688 * 185.00393 * 17 16 14 24 24 H 1.08995 * 109.47113 * 299.99473 * 23 17 16 25 25 O 1.42895 * 109.47526 * 60.00307 * 23 17 16 26 26 H 1.09003 * 109.47337 * 300.00799 * 1 2 3 27 27 H 1.09000 * 109.46917 * 60.00479 * 1 2 3 28 28 H 1.08997 * 109.46812 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47495 * 173.93456 * 3 2 1 30 30 H 1.09007 * 109.46996 * 293.92866 * 3 2 1 31 31 H 1.08993 * 109.47558 * 53.92698 * 3 2 1 32 32 H 0.96998 * 119.99757 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.47174 * 180.02562 * 12 2 1 34 34 H 1.08995 * 109.47025 * 300.00461 * 12 2 1 35 35 H 0.97002 * 120.00142 * 359.97438 * 13 12 2 36 36 H 1.08999 * 109.47381 * 299.99907 * 16 14 13 37 37 H 1.09005 * 109.46794 * 60.00269 * 16 14 13 38 38 H 1.09004 * 109.47222 * 299.99999 * 19 17 16 39 39 H 1.09003 * 109.47220 * 60.00024 * 19 17 16 40 40 H 1.09000 * 109.47036 * 60.00602 * 20 19 17 41 41 H 1.09000 * 109.47049 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.47053 * 179.97438 * 21 20 19 43 43 H 1.09000 * 109.47328 * 300.00137 * 21 20 19 44 44 H 1.09000 * 109.46755 * 59.99804 * 22 21 20 45 45 H 1.08995 * 109.47561 * 180.02562 * 22 21 20 46 46 H 0.96705 * 114.00188 * 179.97438 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6127 -1.6157 1.1323 6 6 1.7508 -0.2043 2.4818 7 7 0.9543 0.8347 2.6070 8 14 2.5009 -0.9944 3.9993 9 1 3.8550 -0.4313 4.2325 10 1 1.6404 -0.7184 5.1776 11 1 2.6034 -2.4615 3.7939 12 6 2.0401 -0.7213 -1.2491 13 7 1.5519 -0.0307 -2.4454 14 6 1.8771 -0.4915 -3.6694 15 8 2.5744 -1.4776 -3.7806 16 6 1.3744 0.2185 -4.9000 17 6 1.8846 -0.5028 -6.1492 18 1 2.9710 -0.5805 -6.1055 19 6 1.2751 -1.9046 -6.2134 20 6 1.7848 -2.6256 -7.4629 21 6 1.3792 -1.8356 -8.7087 22 6 1.9888 -0.4337 -8.6445 23 6 1.4795 0.2872 -7.3953 24 1 0.3932 0.3650 -7.4389 25 8 2.0489 1.5964 -7.3353 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1246 1.4445 0.1086 30 1 1.7681 1.9240 -0.9394 31 1 1.5907 1.9868 0.8305 32 1 0.7565 1.1909 3.4873 33 1 3.1301 -0.7217 -1.2488 34 1 1.6767 -1.7489 -1.2491 35 1 0.9939 0.7577 -2.3564 36 1 0.2844 0.2185 -4.8997 37 1 1.7378 1.2462 -4.9003 38 1 1.5637 -2.4673 -5.3256 39 1 0.1887 -1.8268 -6.2570 40 1 2.8711 -2.7035 -7.4197 41 1 1.3508 -3.6245 -7.5084 42 1 1.7427 -2.3490 -9.5988 43 1 0.2929 -1.7577 -8.7519 44 1 3.0752 -0.5116 -8.6013 45 1 1.6995 0.1293 -9.5318 46 1 1.8333 2.1543 -8.0953 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458046809.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:31 Heat of formation + Delta-G solvation = -144.175666 kcal Electronic energy + Delta-G solvation = -23225.188776 eV Core-core repulsion = 19919.384072 eV Total energy + Delta-G solvation = -3305.804703 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.12764 -39.69191 -38.07572 -36.39286 -34.95214 -33.63682 -32.64477 -30.55788 -28.50119 -27.57321 -27.35341 -26.13063 -23.58918 -22.61559 -21.20223 -20.77116 -20.55672 -18.31546 -18.10078 -17.61277 -16.82576 -16.52426 -16.40536 -16.04376 -15.43390 -15.12531 -14.92805 -14.79439 -14.49190 -14.20850 -13.94813 -13.89567 -13.61551 -13.22791 -13.08208 -13.00385 -12.71924 -12.61227 -12.48161 -12.26730 -12.22495 -12.15020 -11.91199 -11.57906 -11.48715 -11.36079 -11.24479 -11.16760 -10.74862 -10.68968 -10.46659 -10.38626 -9.87259 -8.03917 -6.18571 1.41916 1.44300 1.52040 1.76906 2.36156 2.52115 3.19885 3.33619 3.67287 3.76911 4.00206 4.11144 4.20203 4.31863 4.38931 4.47236 4.48064 4.50478 4.51626 4.63293 4.70776 4.73309 4.84582 4.98433 5.02770 5.05137 5.09038 5.11871 5.18535 5.21620 5.26570 5.27377 5.32575 5.37280 5.48463 5.56808 5.64933 5.66539 5.67355 6.12980 6.20977 6.42450 6.73445 6.85465 7.00644 7.40143 7.48782 8.95645 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.036274 B = 0.003208 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.715056 B = 8726.159878 C = 9108.629734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.051 3.949 3 C -0.118 4.118 4 C -0.533 4.533 5 H 0.043 0.957 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.276 1.276 12 C 0.149 3.851 13 N -0.714 5.714 14 C 0.501 3.499 15 O -0.587 6.587 16 C -0.125 4.125 17 C -0.060 4.060 18 H 0.051 0.949 19 C -0.118 4.118 20 C -0.120 4.120 21 C -0.112 4.112 22 C -0.147 4.147 23 C 0.114 3.886 24 H 0.074 0.926 25 O -0.584 6.584 26 H 0.062 0.938 27 H 0.037 0.963 28 H 0.017 0.983 29 H 0.016 0.984 30 H 0.038 0.962 31 H 0.060 0.940 32 H 0.261 0.739 33 H 0.033 0.967 34 H 0.036 0.964 35 H 0.408 0.592 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.047 0.953 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.054 0.946 45 H 0.087 0.913 46 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.582 1.465 -22.626 22.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.050 3.950 3 C -0.176 4.176 4 C -0.571 4.571 5 H 0.061 0.939 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.201 1.201 12 C 0.025 3.975 13 N -0.366 5.366 14 C 0.289 3.711 15 O -0.468 6.468 16 C -0.165 4.165 17 C -0.079 4.079 18 H 0.070 0.930 19 C -0.155 4.155 20 C -0.158 4.158 21 C -0.150 4.150 22 C -0.185 4.185 23 C 0.056 3.944 24 H 0.091 0.909 25 O -0.392 6.392 26 H 0.081 0.919 27 H 0.056 0.944 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.245 0.755 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.106 0.894 46 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -2.944 0.665 -21.982 22.188 hybrid contribution 0.292 -0.057 0.964 1.009 sum -2.652 0.608 -21.018 21.193 Atomic orbital electron populations 1.21672 0.97006 0.98618 1.00387 1.18351 0.93329 0.92944 0.90327 1.21647 0.98220 0.98003 0.99740 1.21280 1.34026 1.10059 0.91769 0.93889 1.25452 0.95074 0.95635 1.00899 1.69927 1.35438 1.24626 1.23696 0.85786 0.78513 0.78849 0.79740 1.20448 1.20725 1.20119 1.21202 0.96746 0.95012 0.84579 1.46209 1.52936 1.31983 1.05454 1.21417 0.79719 0.84316 0.85658 1.90613 1.40237 1.28551 1.87413 1.21696 1.03437 1.00874 0.90455 1.20823 1.00097 0.94576 0.92448 0.92998 1.21644 1.00312 0.94728 0.98822 1.21538 1.00426 0.99216 0.94594 1.21483 1.01377 0.94707 0.97425 1.22223 1.00904 0.97148 0.98187 1.21773 0.96934 0.82175 0.93547 0.90859 1.86502 1.77577 1.25301 1.49827 0.91903 0.94365 0.96376 0.96519 0.94306 0.92082 0.92996 0.94818 0.94566 0.75498 0.86831 0.87519 0.92591 0.90941 0.93386 0.91349 0.90757 0.90609 0.92680 0.89434 0.75606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 8.11 71.98 0.58 -4.76 16 2 C 0.05 2.41 0.50 -52.93 -0.03 2.38 16 3 C -0.12 -5.36 8.03 71.98 0.58 -4.79 16 4 C -0.53 -28.78 8.01 25.60 0.20 -28.58 16 5 H 0.04 2.38 7.75 -2.91 -0.02 2.36 16 6 C 0.03 1.57 5.13 84.65 0.43 2.01 16 7 N -0.90 -48.45 9.45 21.45 0.20 -48.24 16 8 Si 0.94 43.16 29.54 68.60 2.03 45.19 16 9 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 12 C 0.15 6.52 4.50 86.38 0.39 6.91 16 13 N -0.71 -25.24 4.90 -463.07 -2.27 -27.51 16 14 C 0.50 17.14 7.55 87.66 0.66 17.80 16 15 O -0.59 -24.60 13.96 -3.03 -0.04 -24.64 16 16 C -0.13 -3.05 5.10 29.85 0.15 -2.90 16 17 C -0.06 -1.43 1.58 -10.79 -0.02 -1.44 16 18 H 0.05 1.55 7.95 -2.39 -0.02 1.53 16 19 C -0.12 -2.74 4.94 30.59 0.15 -2.59 16 20 C -0.12 -2.32 5.92 30.59 0.18 -2.14 16 21 C -0.11 -1.54 5.92 30.59 0.18 -1.36 16 22 C -0.15 -2.05 5.54 30.58 0.17 -1.88 16 23 C 0.11 1.90 2.90 30.58 0.09 1.98 16 24 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 25 O -0.58 -9.99 12.56 -148.98 -1.87 -11.86 16 26 H 0.06 3.13 6.10 -2.39 -0.01 3.12 16 27 H 0.04 1.42 6.86 -2.39 -0.02 1.41 16 28 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.04 1.47 6.71 -2.38 -0.02 1.45 16 31 H 0.06 3.03 6.25 -2.39 -0.01 3.01 16 32 H 0.26 13.51 8.31 -92.71 -0.77 12.74 16 33 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.41 12.52 6.16 -92.71 -0.57 11.95 16 36 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.11 2.48 7.54 -2.38 -0.02 2.46 16 38 H 0.06 1.73 5.95 -2.39 -0.01 1.72 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 40 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.09 0.80 8.14 -2.39 -0.02 0.79 16 46 H 0.39 3.04 9.08 -74.05 -0.67 2.37 16 Total: -1.00 -64.49 349.99 1.50 -63.00 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -0.28 Total: 23.41 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: 3.73 Total: -19.34 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -2.07 Total: -75.75 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -1.91 Total: -36.50 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -64.49 1.50 -63.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458046809.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.176 kcal (2) G-P(sol) polarization free energy of solvation -64.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds