Wall clock time and date at job start Tue Mar 31 2020 05:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00420 * 2 1 4 4 H 1.09002 * 109.46850 * 329.99898 * 3 2 1 5 5 C 1.52995 * 109.47257 * 90.00134 * 3 2 1 6 6 C 1.53003 * 109.47306 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.46986 * 300.00047 * 6 5 3 8 8 C 1.53000 * 109.47415 * 59.99679 * 7 6 5 9 9 H 1.09002 * 109.47106 * 60.00216 * 8 7 6 10 10 C 1.50694 * 109.47355 * 180.02562 * 8 7 6 11 11 O 1.21283 * 120.00363 * 120.00014 * 10 8 7 12 12 N 1.34784 * 119.99988 * 300.00132 * 10 8 7 13 13 C 1.46493 * 119.99864 * 179.72721 * 12 10 8 14 14 C 1.53001 * 109.47084 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.46836 * 299.99612 * 14 13 12 16 16 C 1.53000 * 109.47371 * 59.99504 * 14 13 12 17 17 C 1.50702 * 109.47325 * 180.02562 * 14 13 12 18 18 H 1.08004 * 119.99792 * 359.97438 * 17 14 13 19 19 C 1.37875 * 120.00025 * 179.97438 * 17 14 13 20 20 N 1.31515 * 120.00107 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 120.00009 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.47127 * 59.99950 * 21 19 17 23 23 H 1.48507 * 109.47265 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47080 * 300.00056 * 21 19 17 25 25 C 1.53000 * 109.47298 * 210.00342 * 3 2 1 26 26 H 1.08996 * 109.47216 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46875 * 300.00155 * 1 2 3 28 28 H 1.08991 * 109.47013 * 60.00038 * 1 2 3 29 29 H 1.09002 * 109.47384 * 60.00090 * 5 3 2 30 30 H 1.09007 * 109.46935 * 299.99905 * 5 3 2 31 31 H 1.09000 * 109.47521 * 180.02562 * 6 5 3 32 32 H 1.09002 * 109.47113 * 59.99572 * 6 5 3 33 33 H 1.09007 * 109.47195 * 299.99946 * 7 6 5 34 34 H 1.08995 * 109.47242 * 179.97438 * 7 6 5 35 35 H 0.97000 * 119.99339 * 0.02562 * 12 10 8 36 36 H 1.09007 * 109.47196 * 299.99538 * 13 12 10 37 37 H 1.09006 * 109.47678 * 59.99732 * 13 12 10 38 38 H 1.09003 * 109.47126 * 60.00153 * 15 14 13 39 39 H 1.08996 * 109.47277 * 180.02562 * 15 14 13 40 40 H 1.09001 * 109.47339 * 300.00075 * 15 14 13 41 41 H 1.08998 * 109.46763 * 60.00533 * 16 14 13 42 42 H 1.08996 * 109.47041 * 180.02562 * 16 14 13 43 43 H 1.08994 * 109.47083 * 300.00462 * 16 14 13 44 44 H 0.97000 * 120.00440 * 179.97438 * 20 19 17 45 45 H 1.09000 * 109.46966 * 59.99559 * 25 3 2 46 46 H 1.09002 * 109.46807 * 299.99581 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2178 1.7713 1.4424 6 6 2.8396 3.1692 1.4424 7 6 4.1882 3.1275 0.7210 8 6 3.9808 2.6616 -0.7215 9 1 3.3152 3.3553 -1.2353 10 6 5.3091 2.6199 -1.4319 11 8 5.7178 1.5752 -1.8928 12 7 6.0430 3.7437 -1.5551 13 6 7.3370 3.7019 -2.2405 14 6 7.9592 5.0997 -2.2411 15 6 7.0281 6.0719 -2.9683 16 6 8.1607 5.5690 -0.7989 17 6 9.2901 5.0569 -2.9467 18 1 9.6559 4.1257 -3.3536 19 6 10.0408 6.2065 -3.0728 20 7 9.5952 7.3405 -2.5778 21 14 11.6908 6.1533 -3.9468 22 1 11.4952 5.6973 -5.3464 23 1 12.2946 7.5101 -3.9475 24 1 12.5948 5.2102 -3.2407 25 6 3.3589 1.2631 -0.7213 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 2.8830 1.0773 1.9563 30 1 1.2569 1.8014 1.9563 31 1 2.9879 3.5010 2.4701 32 1 2.1741 3.8629 0.9287 33 1 4.8538 2.4338 1.2347 34 1 4.6310 4.1235 0.7206 35 1 5.7162 4.5791 -1.1861 36 1 8.0006 3.0096 -1.7221 37 1 7.1935 3.3672 -3.2679 38 1 6.0652 6.1030 -2.4584 39 1 7.4714 7.0676 -2.9692 40 1 6.8845 5.7377 -3.9958 41 1 8.8241 4.8764 -0.2809 42 1 8.6035 6.5649 -0.7994 43 1 7.1979 5.6000 -0.2890 44 1 10.1234 8.1492 -2.6661 45 1 3.2111 0.9312 -1.7490 46 1 4.0242 0.5692 -0.2074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458047488.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:40 Heat of formation + Delta-G solvation = -115.234164 kcal Electronic energy + Delta-G solvation = -23268.131933 eV Core-core repulsion = 19963.582227 eV Total energy + Delta-G solvation = -3304.549706 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.09946 -38.61215 -36.60456 -36.02577 -33.28289 -31.32393 -30.74655 -29.99686 -26.64891 -25.75388 -25.73346 -25.07842 -23.09732 -22.47681 -20.47100 -19.62266 -18.77611 -17.36300 -16.34451 -15.85855 -15.54422 -15.28479 -15.10983 -15.00114 -14.55323 -14.41522 -13.84451 -13.56793 -13.16492 -12.94548 -12.78508 -12.51452 -12.28069 -12.16414 -11.91825 -11.50120 -11.35564 -11.21844 -11.18266 -10.85161 -10.80984 -10.73198 -10.65376 -10.63218 -10.38611 -10.20417 -9.72454 -9.63672 -9.46718 -9.14486 -8.79255 -8.44154 -8.29214 -6.02352 -4.12437 3.07287 3.30064 3.34227 3.37211 3.42435 3.86942 4.39869 4.54739 4.59817 4.77002 4.89867 4.98912 5.09562 5.12230 5.15049 5.24346 5.25642 5.28373 5.41221 5.44417 5.49734 5.76726 5.82112 5.89881 6.00681 6.03670 6.20855 6.24127 6.30102 6.33969 6.50921 6.79055 6.81553 6.93566 7.01561 7.03940 7.05716 7.35298 7.55160 7.69059 8.00608 8.07212 8.16397 8.38564 8.73711 8.88378 9.53394 10.99023 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.039979 B = 0.003222 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.199014 B = 8689.495877 C = 9036.315501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.090 3.910 4 H 0.060 0.940 5 C -0.142 4.142 6 C -0.114 4.114 7 C -0.114 4.114 8 C -0.104 4.104 9 H 0.094 0.906 10 C 0.508 3.492 11 O -0.551 6.551 12 N -0.716 5.716 13 C 0.131 3.869 14 C 0.057 3.943 15 C -0.131 4.131 16 C -0.130 4.130 17 C -0.507 4.507 18 H 0.057 0.943 19 C 0.066 3.934 20 N -0.887 5.887 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.094 4.094 26 H 0.083 0.917 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.397 0.603 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.006 0.994 39 H 0.085 0.915 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.085 0.915 43 H 0.006 0.994 44 H 0.260 0.740 45 H 0.075 0.925 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.036 -5.987 7.869 19.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.032 3.968 4 H 0.078 0.922 5 C -0.179 4.179 6 C -0.152 4.152 7 C -0.152 4.152 8 C -0.125 4.125 9 H 0.112 0.888 10 C 0.293 3.707 11 O -0.429 6.429 12 N -0.366 5.366 13 C 0.009 3.991 14 C 0.056 3.944 15 C -0.188 4.188 16 C -0.188 4.188 17 C -0.545 4.545 18 H 0.075 0.925 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.132 4.132 26 H 0.102 0.898 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.232 0.768 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.025 0.975 39 H 0.104 0.896 40 H 0.045 0.955 41 H 0.046 0.954 42 H 0.104 0.896 43 H 0.025 0.975 44 H 0.070 0.930 45 H 0.094 0.906 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.543 -6.691 7.537 19.371 hybrid contribution 0.527 0.678 -0.307 0.912 sum -16.016 -6.012 7.229 18.572 Atomic orbital electron populations 1.22766 0.81440 1.02564 0.99788 1.87930 1.19304 1.27997 1.95044 1.22172 0.94990 0.84211 0.95422 0.92203 1.22058 1.01264 0.97427 0.97181 1.21481 0.96384 0.96388 1.00924 1.21578 0.97839 1.02181 0.93593 1.21272 0.95447 0.98774 0.97054 0.88776 1.20420 0.86056 0.84100 0.80075 1.90672 1.72221 1.30593 1.49423 1.46318 1.21800 1.10667 1.57838 1.21710 0.81515 1.00554 0.95356 1.18342 0.94213 0.88253 0.93602 1.21832 0.95473 1.03912 0.97633 1.21825 0.96918 1.03817 0.96245 1.20962 1.02394 0.95035 1.36138 0.92507 1.24874 0.97868 0.95399 0.95336 1.69791 1.37837 0.99334 1.45562 0.86633 0.83969 0.77002 0.80255 1.20281 1.21326 1.20281 1.21331 0.94412 0.95778 1.01698 0.89801 0.94241 0.94106 0.90908 0.91990 0.91169 0.91676 0.91023 0.90868 0.76764 0.92802 0.92787 0.97531 0.89592 0.95468 0.95449 0.89617 0.97527 0.92956 0.90604 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.38 -4.43 10.35 -35.23 -0.36 -4.80 16 3 C 0.09 0.94 2.61 -26.73 -0.07 0.87 16 4 H 0.06 0.55 7.79 -51.93 -0.40 0.15 16 5 C -0.14 -1.29 5.54 -26.73 -0.15 -1.44 16 6 C -0.11 -0.97 5.92 -26.73 -0.16 -1.13 16 7 C -0.11 -1.21 5.10 -26.73 -0.14 -1.35 16 8 C -0.10 -1.29 2.53 -91.75 -0.23 -1.53 16 9 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 10 C 0.51 8.69 7.15 -10.98 -0.08 8.61 16 11 O -0.55 -11.59 15.98 5.56 0.09 -11.50 16 12 N -0.72 -12.56 4.85 -60.29 -0.29 -12.85 16 13 C 0.13 2.79 4.50 -4.04 -0.02 2.77 16 14 C 0.06 1.30 0.50 -155.66 -0.08 1.23 16 15 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 16 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 17 C -0.51 -13.29 8.01 -34.44 -0.28 -13.56 16 18 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 19 C 0.07 1.75 5.15 -17.82 -0.09 1.65 16 20 N -0.89 -23.55 9.35 55.43 0.52 -23.03 16 21 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C -0.09 -1.20 4.14 -26.71 -0.11 -1.32 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.04 0.26 7.87 -51.93 -0.41 -0.14 16 28 H 0.04 0.29 8.08 -51.93 -0.42 -0.13 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.49 7.87 -51.93 -0.41 0.09 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 34 H 0.07 0.76 7.56 -51.93 -0.39 0.36 16 35 H 0.40 6.24 5.58 -40.82 -0.23 6.01 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.01 0.11 6.87 -51.93 -0.36 -0.24 16 39 H 0.09 2.13 6.07 -51.93 -0.31 1.81 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 43 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 44 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 45 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 46 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 LS Contribution 353.82 15.07 5.33 5.33 Total: -1.00 -29.02 353.82 -7.66 -36.67 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -8.22 Total: 3.53 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 0.30 Total: -9.08 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.23 Total: -35.88 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.28 Total: -16.30 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.02 -7.66 -36.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458047488.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.560 kcal (2) G-P(sol) polarization free energy of solvation -29.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds