Wall clock time and date at job start Tue Mar 31 2020 05:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42905 * 113.99571 * 2 1 4 4 H 1.09000 * 109.47255 * 329.99772 * 3 2 1 5 5 C 1.52994 * 109.46907 * 90.00068 * 3 2 1 6 6 C 1.53001 * 109.46895 * 179.97438 * 5 3 2 7 7 C 1.52992 * 109.47413 * 300.00051 * 6 5 3 8 8 C 1.53002 * 109.46930 * 60.00019 * 7 6 5 9 9 H 1.09000 * 109.47161 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47235 * 60.00058 * 8 7 6 11 11 O 1.21283 * 120.00084 * 239.99978 * 10 8 7 12 12 N 1.34775 * 119.99940 * 59.99986 * 10 8 7 13 13 C 1.46506 * 120.00101 * 180.02562 * 12 10 8 14 14 C 1.52994 * 109.47382 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.46821 * 299.99702 * 14 13 12 16 16 C 1.53001 * 109.47334 * 59.99511 * 14 13 12 17 17 C 1.50702 * 109.47126 * 180.02562 * 14 13 12 18 18 H 1.07994 * 119.99682 * 356.99712 * 17 14 13 19 19 C 1.37876 * 119.99454 * 177.00480 * 17 14 13 20 20 N 1.31507 * 120.00671 * 5.54097 * 19 17 14 21 21 Si 1.86806 * 119.99510 * 185.53684 * 19 17 14 22 22 H 1.48507 * 109.47066 * 85.00152 * 21 19 17 23 23 H 1.48493 * 109.47179 * 204.99883 * 21 19 17 24 24 H 1.48504 * 109.47234 * 325.00281 * 21 19 17 25 25 C 1.52999 * 109.46647 * 210.00192 * 3 2 1 26 26 H 1.09003 * 109.47178 * 60.00282 * 1 2 3 27 27 H 1.09002 * 109.46656 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46811 * 299.99655 * 1 2 3 29 29 H 1.09003 * 109.47053 * 60.00171 * 5 3 2 30 30 H 1.09000 * 109.47362 * 299.99552 * 5 3 2 31 31 H 1.09006 * 109.47192 * 180.02562 * 6 5 3 32 32 H 1.08999 * 109.47136 * 60.00691 * 6 5 3 33 33 H 1.09003 * 109.47553 * 299.99909 * 7 6 5 34 34 H 1.09006 * 109.47253 * 179.97438 * 7 6 5 35 35 H 0.97003 * 120.00073 * 359.97438 * 12 10 8 36 36 H 1.09006 * 109.46814 * 299.99954 * 13 12 10 37 37 H 1.09003 * 109.46944 * 59.99164 * 13 12 10 38 38 H 1.08998 * 109.47423 * 53.93608 * 15 14 13 39 39 H 1.09004 * 109.47482 * 173.93910 * 15 14 13 40 40 H 1.09001 * 109.47030 * 293.93870 * 15 14 13 41 41 H 1.08993 * 109.46800 * 60.00340 * 16 14 13 42 42 H 1.08998 * 109.46756 * 180.02562 * 16 14 13 43 43 H 1.09000 * 109.47066 * 300.00015 * 16 14 13 44 44 H 0.97001 * 120.00228 * 180.02562 * 20 19 17 45 45 H 1.08998 * 109.47601 * 60.00176 * 25 3 2 46 46 H 1.09003 * 109.47432 * 299.99902 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 1.9994 -0.5139 5 6 2.2176 1.7714 1.4425 6 6 2.8404 3.1689 1.4425 7 6 4.1891 3.1263 0.7214 8 6 3.9816 2.6604 -0.7211 9 1 4.9425 2.6296 -1.2347 10 6 3.0623 3.6200 -1.4317 11 8 2.0123 3.2251 -1.8927 12 7 3.4068 4.9171 -1.5548 13 6 2.5128 5.8502 -2.2451 14 6 3.1358 7.2476 -2.2458 15 6 3.3443 7.7136 -0.8034 16 6 4.4841 7.2045 -2.9677 17 6 2.2159 8.2074 -2.9553 18 1 1.3036 7.8469 -3.4070 19 6 2.5391 9.5458 -3.0278 20 7 3.6994 9.9676 -2.5748 21 14 1.3288 10.7600 -3.7697 22 1 0.3636 11.1956 -2.7285 23 1 2.0661 11.9409 -4.2862 24 1 0.5943 10.1087 -4.8840 25 6 3.3588 1.2633 -0.7213 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.8829 1.0775 1.9563 30 1 1.2568 1.8015 1.9563 31 1 2.9886 3.5007 2.4702 32 1 2.1754 3.8630 0.9286 33 1 4.8541 2.4322 1.2353 34 1 4.6326 4.1221 0.7210 35 1 4.2464 5.2331 -1.1858 36 1 2.3646 5.5184 -3.2728 37 1 1.5521 5.8805 -1.7310 38 1 3.9203 6.9651 -0.2594 39 1 3.8851 8.6600 -0.8019 40 1 2.3759 7.8478 -0.3214 41 1 4.3356 6.8725 -3.9952 42 1 4.9281 8.1999 -2.9677 43 1 5.1493 6.5103 -2.4541 44 1 3.9266 10.9093 -2.6255 45 1 3.2111 0.9314 -1.7490 46 1 4.0242 0.5694 -0.2075 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458047490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:50 Heat of formation + Delta-G solvation = -110.414648 kcal Electronic energy + Delta-G solvation = -23907.950079 eV Core-core repulsion = 20603.609364 eV Total energy + Delta-G solvation = -3304.340716 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.40785 -38.19152 -36.54403 -35.81917 -33.33622 -31.25404 -30.76308 -29.79953 -26.40513 -25.77526 -25.75589 -25.08359 -22.96204 -22.37439 -20.96777 -19.29660 -18.72783 -16.84958 -16.50277 -15.76171 -15.71485 -15.19299 -15.08002 -14.72391 -14.63892 -14.15676 -13.69487 -13.44823 -13.10449 -12.91648 -12.72291 -12.28924 -12.20421 -12.12154 -11.93626 -11.69070 -11.42647 -11.21105 -11.02104 -10.89591 -10.79378 -10.71392 -10.52774 -10.43729 -10.32060 -10.21284 -9.64856 -9.47901 -9.36781 -9.08682 -8.80413 -8.45561 -8.30245 -6.04578 -4.13443 3.03404 3.27332 3.33994 3.37229 3.73648 3.77675 4.38740 4.69298 4.70339 4.86262 5.07868 5.15910 5.22667 5.24742 5.35568 5.42485 5.43339 5.48045 5.56316 5.64476 5.67372 5.82077 5.95089 6.03433 6.10629 6.12942 6.21802 6.26529 6.30917 6.35992 6.49145 6.77049 6.79216 6.90876 6.99257 7.03249 7.30353 7.33301 7.53412 7.67963 7.97149 8.04443 8.13680 8.36299 8.70462 8.87062 9.52158 10.97399 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.027716 B = 0.003905 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.992091 B = 7167.831857 C = 7514.004473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.074 3.926 4 H 0.096 0.904 5 C -0.138 4.138 6 C -0.121 4.121 7 C -0.111 4.111 8 C -0.109 4.109 9 H 0.100 0.900 10 C 0.509 3.491 11 O -0.551 6.551 12 N -0.715 5.715 13 C 0.132 3.868 14 C 0.056 3.944 15 C -0.128 4.128 16 C -0.130 4.130 17 C -0.508 4.508 18 H 0.057 0.943 19 C 0.068 3.932 20 N -0.885 5.885 21 Si 0.892 3.108 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.275 1.275 25 C -0.091 4.091 26 H 0.043 0.957 27 H 0.080 0.920 28 H 0.037 0.963 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.397 0.603 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.006 0.994 39 H 0.081 0.919 40 H 0.028 0.972 41 H 0.026 0.974 42 H 0.085 0.915 43 H 0.005 0.995 44 H 0.260 0.740 45 H 0.073 0.927 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.487 -14.106 7.716 16.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C 0.017 3.983 4 H 0.113 0.887 5 C -0.176 4.176 6 C -0.158 4.158 7 C -0.149 4.149 8 C -0.130 4.130 9 H 0.118 0.882 10 C 0.295 3.705 11 O -0.431 6.431 12 N -0.365 5.365 13 C 0.009 3.991 14 C 0.055 3.945 15 C -0.185 4.185 16 C -0.188 4.188 17 C -0.546 4.546 18 H 0.075 0.925 19 C -0.134 4.134 20 N -0.523 5.523 21 Si 0.720 3.280 22 H -0.206 1.206 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.129 4.129 26 H 0.062 0.938 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.233 0.767 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.025 0.975 39 H 0.100 0.900 40 H 0.047 0.953 41 H 0.045 0.955 42 H 0.104 0.896 43 H 0.024 0.976 44 H 0.070 0.930 45 H 0.092 0.908 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.950 -14.345 7.386 16.162 hybrid contribution -0.434 1.144 -0.197 1.240 sum 0.516 -13.200 7.188 15.039 Atomic orbital electron populations 1.22722 0.81535 1.01989 1.00087 1.87809 1.19355 1.28671 1.95110 1.22530 0.96037 0.84868 0.94903 0.88663 1.22028 1.00972 0.96899 0.97719 1.21520 0.96621 0.96898 1.00790 1.21558 0.97933 1.01948 0.93479 1.21370 0.99637 0.94864 0.97154 0.88235 1.20485 0.87042 0.83168 0.79805 1.90584 1.25274 1.77554 1.49643 1.46348 1.24212 1.08402 1.57519 1.21690 0.92307 0.89823 0.95254 1.18353 0.93651 0.88873 0.93618 1.21795 0.99294 1.01249 0.96201 1.21844 0.97448 1.01862 0.97611 1.20965 1.06241 0.92131 1.35311 0.92498 1.24867 0.95078 0.98223 0.95204 1.69819 1.20348 1.15221 1.46940 0.86611 0.81251 0.80681 0.79466 1.20631 1.21318 1.19975 1.21272 0.95397 0.94631 1.01561 0.93819 0.90181 0.94474 0.91557 0.92195 0.91382 0.91497 0.90782 0.91016 0.76723 0.92813 0.92833 0.97478 0.90048 0.95256 0.95486 0.89599 0.97588 0.93006 0.90789 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.82 101.05 1.09 1.47 16 2 O -0.39 -5.43 10.35 -35.23 -0.36 -5.80 16 3 C 0.07 1.01 2.32 -26.73 -0.06 0.95 16 4 H 0.10 1.56 5.16 -51.93 -0.27 1.29 16 5 C -0.14 -1.63 5.54 -26.73 -0.15 -1.78 16 6 C -0.12 -1.40 5.70 -26.73 -0.15 -1.56 16 7 C -0.11 -1.18 5.36 -26.73 -0.14 -1.32 16 8 C -0.11 -1.34 3.01 -91.79 -0.28 -1.61 16 9 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 10 C 0.51 8.32 5.64 -10.99 -0.06 8.26 16 11 O -0.55 -10.81 13.66 5.55 0.08 -10.74 16 12 N -0.71 -12.14 4.80 -60.29 -0.29 -12.43 16 13 C 0.13 2.73 4.50 -4.04 -0.02 2.71 16 14 C 0.06 1.26 0.50 -155.66 -0.08 1.19 16 15 C -0.13 -2.80 8.03 37.16 0.30 -2.50 16 16 C -0.13 -2.88 8.11 37.16 0.30 -2.57 16 17 C -0.51 -13.16 8.01 -34.44 -0.28 -13.44 16 18 H 0.06 1.50 7.75 -52.49 -0.41 1.09 16 19 C 0.07 1.77 5.13 -17.82 -0.09 1.67 16 20 N -0.88 -23.33 9.45 55.43 0.52 -22.81 16 21 Si 0.89 20.58 29.54 -169.99 -5.02 15.55 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 C -0.09 -1.15 4.74 -26.75 -0.13 -1.28 16 26 H 0.04 0.52 8.09 -51.93 -0.42 0.10 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.38 7.87 -51.93 -0.41 -0.02 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.69 7.87 -51.93 -0.41 0.28 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.94 7.22 -51.93 -0.37 0.56 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.74 7.56 -51.93 -0.39 0.34 16 35 H 0.40 6.12 5.57 -40.82 -0.23 5.89 16 36 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.01 0.12 6.71 -51.93 -0.35 -0.23 16 39 H 0.08 1.97 6.25 -51.93 -0.32 1.65 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 2.11 6.11 -51.93 -0.32 1.79 16 43 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 44 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 45 H 0.07 1.03 8.10 -51.93 -0.42 0.60 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 347.36 15.07 5.23 5.23 Total: -1.00 -28.00 347.36 -7.62 -35.62 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -8.04 Total: 5.17 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 0.26 Total: -9.81 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.23 Total: -35.24 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.29 Total: -16.54 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.00 -7.62 -35.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458047490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.792 kcal (2) G-P(sol) polarization free energy of solvation -28.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds