Wall clock time and date at job start Tue Mar 31 2020 05:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 H 1.08998 * 109.47145 * 29.99590 * 3 2 1 5 5 C 1.52996 * 109.47031 * 269.99750 * 3 2 1 6 6 C 1.53006 * 109.47098 * 300.00156 * 5 3 2 7 7 C 1.52998 * 109.46859 * 299.99833 * 6 5 3 8 8 C 1.52996 * 109.47129 * 60.00186 * 7 6 5 9 9 H 1.09006 * 109.47128 * 60.00131 * 8 7 6 10 10 C 1.50701 * 109.47303 * 179.97438 * 8 7 6 11 11 O 1.21284 * 119.99907 * 119.99819 * 10 8 7 12 12 N 1.34781 * 120.00124 * 300.00234 * 10 8 7 13 13 C 1.46501 * 120.00049 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.46758 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47545 * 299.99777 * 14 13 12 16 16 C 1.52996 * 109.47124 * 60.00157 * 14 13 12 17 17 C 1.50701 * 109.46581 * 179.97438 * 14 13 12 18 18 H 1.07996 * 120.00431 * 0.02562 * 17 14 13 19 19 C 1.37877 * 119.99662 * 180.02562 * 17 14 13 20 20 N 1.31524 * 120.00155 * 359.97438 * 19 17 14 21 21 Si 1.86804 * 120.00006 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.46948 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47300 * 119.99776 * 21 19 17 24 24 H 1.48503 * 109.47203 * 240.00009 * 21 19 17 25 25 C 1.52998 * 109.46942 * 149.99763 * 3 2 1 26 26 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 28 28 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 29 29 H 1.08997 * 109.47597 * 59.99980 * 5 3 2 30 30 H 1.09001 * 109.47120 * 180.02562 * 5 3 2 31 31 H 1.09004 * 109.47204 * 180.02562 * 6 5 3 32 32 H 1.09001 * 109.46909 * 60.00147 * 6 5 3 33 33 H 1.09001 * 109.47617 * 299.99881 * 7 6 5 34 34 H 1.09009 * 109.46650 * 179.97438 * 7 6 5 35 35 H 0.97003 * 119.99742 * 359.97438 * 12 10 8 36 36 H 1.08997 * 109.46986 * 299.99983 * 13 12 10 37 37 H 1.08995 * 109.46917 * 60.00076 * 13 12 10 38 38 H 1.09001 * 109.46917 * 60.00009 * 15 14 13 39 39 H 1.08992 * 109.47483 * 180.02562 * 15 14 13 40 40 H 1.09004 * 109.47287 * 300.00492 * 15 14 13 41 41 H 1.09001 * 109.47120 * 59.99960 * 16 14 13 42 42 H 1.09003 * 109.47460 * 179.97438 * 16 14 13 43 43 H 1.08997 * 109.47597 * 299.99508 * 16 14 13 44 44 H 0.96996 * 119.99805 * 179.97438 * 20 19 17 45 45 H 1.09001 * 109.47250 * 179.97438 * 25 3 2 46 46 H 1.09003 * 109.47592 * 299.99892 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.1516 0.7973 -2.1637 7 6 4.5002 0.7552 -1.4424 8 6 4.2927 0.2893 0.0001 9 1 3.8494 -0.7065 0.0001 10 6 5.6212 0.2472 0.7104 11 8 5.8034 0.9294 1.6965 12 7 6.6068 -0.5484 0.2498 13 6 7.8984 -0.5889 0.9401 14 6 8.8315 -1.5638 0.2191 15 6 8.2087 -2.9613 0.2202 16 6 9.0386 -1.0989 -1.2237 17 6 10.1603 -1.6049 0.9287 18 1 10.3228 -0.9969 1.8064 19 6 11.1685 -2.4188 0.4575 20 7 10.9704 -3.1596 -0.6111 21 14 12.8155 -2.4703 1.3375 22 1 12.7825 -1.5516 2.5037 23 1 13.0841 -3.8542 1.8044 24 1 13.8892 -2.0458 0.4037 25 6 3.3589 1.2633 0.7213 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.2569 1.8014 -1.9564 30 1 2.6614 2.7669 -1.4425 31 1 3.2997 1.1294 -3.1913 32 1 2.7082 -0.1985 -2.1637 33 1 4.9436 1.7509 -1.4424 34 1 5.1653 0.0608 -1.9560 35 1 6.4608 -1.0943 -0.5387 36 1 8.3418 0.4068 0.9396 37 1 7.7508 -0.9205 1.9678 38 1 7.2477 -2.9311 -0.2933 39 1 8.8736 -3.6558 -0.2930 40 1 8.0611 -3.2925 1.2482 41 1 9.4824 -0.1033 -1.2245 42 1 9.7037 -1.7931 -1.7373 43 1 8.0777 -1.0687 -1.7373 44 1 11.6799 -3.7318 -0.9427 45 1 3.8024 2.2590 0.7209 46 1 3.2111 0.9314 1.7490 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458047492.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:54 Heat of formation + Delta-G solvation = -113.706105 kcal Electronic energy + Delta-G solvation = -23483.409749 eV Core-core repulsion = 20178.926305 eV Total energy + Delta-G solvation = -3304.483444 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.09950 -38.60984 -36.43566 -35.74917 -33.23128 -31.25867 -30.71746 -30.05249 -26.68251 -25.70826 -25.69632 -25.04463 -23.09345 -22.54722 -20.24310 -19.46263 -18.73517 -17.19504 -16.27895 -15.87475 -15.67665 -15.25235 -15.11806 -14.89920 -14.53749 -14.33562 -13.65490 -13.40631 -12.96792 -12.78498 -12.75622 -12.45519 -12.30388 -12.18264 -11.98976 -11.48494 -11.36796 -11.29493 -11.15996 -10.91768 -10.85353 -10.64474 -10.49604 -10.35459 -10.30136 -10.17845 -9.66014 -9.60313 -9.41829 -9.08213 -8.74259 -8.41350 -8.24384 -6.00142 -4.10019 3.16145 3.28393 3.36918 3.41677 3.62833 3.82965 4.41916 4.56410 4.64158 4.77499 5.02224 5.08035 5.13524 5.15045 5.25341 5.26574 5.34388 5.38434 5.44572 5.53427 5.64720 5.76636 5.89571 5.98011 6.09696 6.12751 6.24271 6.29805 6.35808 6.38461 6.54950 6.83072 6.86129 6.97869 7.05220 7.05479 7.11331 7.39234 7.58686 7.71854 8.03867 8.12410 8.21574 8.41528 8.80453 8.91574 9.55749 11.01238 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.035903 B = 0.003386 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.702119 B = 8268.449772 C = 8421.353626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.088 3.912 4 H 0.061 0.939 5 C -0.141 4.141 6 C -0.111 4.111 7 C -0.110 4.110 8 C -0.102 4.102 9 H 0.101 0.899 10 C 0.507 3.493 11 O -0.557 6.557 12 N -0.716 5.716 13 C 0.131 3.869 14 C 0.055 3.945 15 C -0.130 4.130 16 C -0.130 4.130 17 C -0.505 4.505 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.093 4.093 26 H 0.083 0.917 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.397 0.603 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.006 0.994 39 H 0.085 0.915 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.085 0.915 43 H 0.006 0.994 44 H 0.259 0.741 45 H 0.081 0.919 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.875 6.480 -4.037 20.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C 0.031 3.969 4 H 0.079 0.921 5 C -0.179 4.179 6 C -0.149 4.149 7 C -0.148 4.148 8 C -0.123 4.123 9 H 0.119 0.881 10 C 0.293 3.707 11 O -0.436 6.436 12 N -0.366 5.366 13 C 0.009 3.991 14 C 0.055 3.945 15 C -0.188 4.188 16 C -0.188 4.188 17 C -0.543 4.543 18 H 0.076 0.924 19 C -0.136 4.136 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.131 4.131 26 H 0.102 0.898 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.233 0.767 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.025 0.975 39 H 0.104 0.896 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.104 0.896 43 H 0.025 0.975 44 H 0.069 0.931 45 H 0.100 0.900 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.496 6.659 -3.436 19.956 hybrid contribution 0.643 -0.127 0.058 0.658 sum -17.854 6.532 -3.377 19.309 Atomic orbital electron populations 1.22760 0.81690 1.02551 0.99614 1.87953 1.19030 1.27792 1.94988 1.22193 0.94842 0.84550 0.95358 0.92107 1.22040 0.99992 0.99729 0.96160 1.21408 0.94873 1.00291 0.98297 1.21525 0.97629 1.02071 0.93605 1.21232 0.93404 1.02108 0.95575 0.88082 1.20607 0.85772 0.79713 0.84622 1.90644 1.82456 1.43516 1.26967 1.46327 1.14376 1.44205 1.31735 1.21688 0.81333 1.00313 0.95778 1.18354 0.92823 0.90587 0.92755 1.21822 0.97106 1.00729 0.99157 1.21819 0.98166 1.00405 0.98366 1.21043 0.96386 1.24824 1.12087 0.92421 1.24885 0.98526 0.95202 0.94940 1.69820 1.32792 1.27020 1.22845 0.86525 0.83865 0.77791 0.79760 1.19768 1.21070 1.21086 1.21419 0.92213 1.00201 0.99230 0.89828 0.94266 0.94342 0.92042 0.90988 0.91930 0.91031 0.91563 0.91180 0.76746 0.92876 0.92883 0.97458 0.89635 0.95489 0.95509 0.89635 0.97491 0.93099 0.90030 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.33 16 2 O -0.38 -4.12 9.00 -35.23 -0.32 -4.44 16 3 C 0.09 0.89 2.92 -26.73 -0.08 0.81 16 4 H 0.06 0.53 7.79 -51.93 -0.40 0.12 16 5 C -0.14 -1.25 5.63 -26.73 -0.15 -1.41 16 6 C -0.11 -1.07 5.78 -26.73 -0.15 -1.23 16 7 C -0.11 -1.28 5.10 -26.73 -0.14 -1.41 16 8 C -0.10 -1.37 2.38 -91.77 -0.22 -1.59 16 9 H 0.10 1.36 7.68 -51.93 -0.40 0.96 16 10 C 0.51 8.99 7.16 -10.98 -0.08 8.91 16 11 O -0.56 -11.83 15.98 5.55 0.09 -11.75 16 12 N -0.72 -13.08 4.85 -60.29 -0.29 -13.37 16 13 C 0.13 2.86 4.50 -4.04 -0.02 2.84 16 14 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 15 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 16 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 17 C -0.50 -13.39 8.01 -34.44 -0.28 -13.67 16 18 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 19 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 20 N -0.89 -23.78 9.35 55.43 0.52 -23.26 16 21 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C -0.09 -1.16 4.23 -26.73 -0.11 -1.27 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 28 H 0.04 0.25 7.87 -51.93 -0.41 -0.16 16 29 H 0.06 0.48 7.87 -51.93 -0.41 0.07 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.73 7.68 -51.93 -0.40 0.33 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.81 7.56 -51.92 -0.39 0.42 16 35 H 0.40 6.62 5.58 -40.82 -0.23 6.39 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 39 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 43 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 44 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 45 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 46 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 LS Contribution 351.75 15.07 5.30 5.30 Total: -1.00 -29.03 351.75 -7.59 -36.62 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -8.17 Total: 4.17 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 0.30 Total: -9.15 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.23 Total: -36.63 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.23 Total: -16.18 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.03 -7.59 -36.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458047492.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.089 kcal (2) G-P(sol) polarization free energy of solvation -29.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds