Wall clock time and date at job start Tue Mar 31 2020 05:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.46986 * 300.00240 * 5 3 2 7 7 C 1.53005 * 109.47219 * 180.02562 * 6 5 3 8 8 C 1.52994 * 109.46906 * 59.99762 * 7 6 5 9 9 N 1.46895 * 109.47341 * 60.00474 * 8 7 6 10 10 C 1.46896 * 111.00211 * 84.99840 * 9 8 7 11 11 C 1.53001 * 109.46890 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47075 * 299.99488 * 11 10 9 13 13 C 1.52997 * 109.47574 * 60.00007 * 11 10 9 14 14 C 1.50705 * 109.46691 * 180.02562 * 11 10 9 15 15 H 1.07993 * 120.00479 * 359.97438 * 14 11 10 16 16 C 1.37881 * 119.99835 * 180.02562 * 14 11 10 17 17 N 1.31512 * 119.99750 * 359.97438 * 16 14 11 18 18 Si 1.86797 * 120.00022 * 179.97438 * 16 14 11 19 19 H 1.48507 * 109.47088 * 59.99928 * 18 16 14 20 20 H 1.48497 * 109.47233 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47108 * 299.99761 * 18 16 14 22 22 C 1.52998 * 109.47366 * 299.99803 * 8 7 6 23 23 C 1.52992 * 109.47257 * 180.02562 * 5 3 2 24 24 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 25 25 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 27 27 H 1.08997 * 109.47392 * 59.99712 * 5 3 2 28 28 H 1.09005 * 109.46932 * 299.99942 * 6 5 3 29 29 H 1.08998 * 109.47453 * 59.99968 * 6 5 3 30 30 H 1.09000 * 109.46608 * 299.99989 * 7 6 5 31 31 H 1.08999 * 109.46783 * 179.97438 * 7 6 5 32 32 H 1.09005 * 109.46734 * 180.02562 * 8 7 6 33 33 H 1.00896 * 110.99713 * 321.03964 * 9 8 7 34 34 H 1.08995 * 109.47053 * 299.99923 * 10 9 8 35 35 H 1.08994 * 109.47319 * 60.00203 * 10 9 8 36 36 H 1.08993 * 109.46952 * 60.00545 * 12 11 10 37 37 H 1.09008 * 109.46756 * 180.02562 * 12 11 10 38 38 H 1.09000 * 109.47137 * 300.00139 * 12 11 10 39 39 H 1.09009 * 109.46905 * 59.99615 * 13 11 10 40 40 H 1.08995 * 109.47364 * 179.97438 * 13 11 10 41 41 H 1.09001 * 109.46740 * 299.99994 * 13 11 10 42 42 H 0.97009 * 119.99975 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.47603 * 300.00663 * 22 8 7 44 44 H 1.08998 * 109.47444 * 180.02562 * 22 8 7 45 45 H 1.09004 * 109.47330 * 299.99977 * 23 5 3 46 46 H 1.09005 * 109.47124 * 59.99773 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1128 0.5816 1.2502 7 6 5.6408 0.6622 1.2512 8 6 6.0740 2.1295 1.2514 9 7 5.5478 2.7953 2.4504 10 6 6.4425 2.5965 3.5984 11 6 5.8621 3.3022 4.8256 12 6 5.7275 4.7987 4.5372 13 6 4.4845 2.7185 5.1456 14 6 6.7803 3.0987 6.0031 15 1 7.6869 2.5233 5.8879 16 6 6.4624 3.6463 7.2279 17 7 5.3582 4.3466 7.3684 18 14 7.6002 3.3935 8.6877 19 1 8.9372 3.9605 8.3773 20 1 7.0369 4.0785 9.8788 21 1 7.7313 1.9409 8.9674 22 6 5.5275 2.8229 0.0018 23 6 4.0001 2.7421 0.0011 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.9564 0.7806 -0.8891 28 1 3.7227 1.0759 2.1399 29 1 3.8038 -0.4637 1.2503 30 1 6.0312 0.1682 0.3614 31 1 6.0300 0.1686 2.1416 32 1 7.1625 2.1870 1.2516 33 1 4.6138 2.4767 2.6604 34 1 6.5381 1.5304 3.8041 35 1 7.4240 3.0119 3.3703 36 1 5.0636 4.9463 3.6854 37 1 5.3143 5.3015 5.4117 38 1 6.7089 5.2145 4.3093 39 1 4.5805 1.6522 5.3511 40 1 4.0712 3.2209 6.0201 41 1 3.8206 2.8660 4.2938 42 1 5.1343 4.7316 8.2302 43 1 5.9179 2.3289 -0.8880 44 1 5.8365 3.8681 0.0017 45 1 3.6107 3.2365 -0.8889 46 1 3.6100 3.2360 0.8911 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459729654.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:58 Heat of formation + Delta-G solvation = -107.401533 kcal Electronic energy + Delta-G solvation = -23815.742329 eV Core-core repulsion = 20511.532272 eV Total energy + Delta-G solvation = -3304.210057 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.80797 -38.91935 -36.64434 -36.02010 -33.27026 -31.23140 -30.74839 -29.00705 -27.63860 -25.54289 -25.18464 -23.98539 -23.42172 -22.58073 -20.70803 -18.97702 -18.37164 -17.60534 -16.82798 -16.50699 -15.94408 -15.60577 -14.65467 -14.49071 -14.29100 -14.06586 -13.64792 -13.28555 -12.87153 -12.83998 -12.64059 -12.48464 -12.16189 -12.07062 -12.00690 -11.60689 -11.20517 -11.05198 -11.04482 -10.92774 -10.73655 -10.66700 -10.58153 -10.43656 -10.24199 -10.10368 -10.05272 -9.98418 -9.35156 -9.00076 -8.59802 -8.25973 -7.61015 -5.88103 -3.98638 2.13699 2.62076 3.34132 3.39130 3.41473 4.45629 4.49974 4.64381 4.67559 4.91918 4.93506 5.01371 5.08926 5.19655 5.27760 5.36336 5.37071 5.43393 5.49996 5.52388 5.75618 5.86597 6.01920 6.11109 6.14545 6.21257 6.32265 6.36474 6.40838 6.50477 6.57116 6.75886 6.92840 7.11396 7.20244 7.43132 7.52207 7.67397 7.78691 7.79909 7.88369 8.04947 8.24790 8.38857 8.59234 9.02815 9.66177 11.12227 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.023350 B = 0.004006 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.845130 B = 6987.673033 C = 7417.298889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.463 3.537 4 O -0.503 6.503 5 C -0.076 4.076 6 C -0.112 4.112 7 C -0.147 4.147 8 C 0.081 3.919 9 N -0.680 5.680 10 C 0.075 3.925 11 C 0.069 3.931 12 C -0.118 4.118 13 C -0.131 4.131 14 C -0.507 4.507 15 H 0.051 0.949 16 C 0.065 3.935 17 N -0.884 5.884 18 Si 0.888 3.112 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.279 1.279 22 C -0.102 4.102 23 C -0.103 4.103 24 H 0.060 0.940 25 H 0.099 0.901 26 H 0.063 0.937 27 H 0.105 0.895 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.338 0.662 34 H 0.012 0.988 35 H 0.055 0.945 36 H 0.020 0.980 37 H 0.073 0.927 38 H 0.017 0.983 39 H 0.018 0.982 40 H 0.083 0.917 41 H 0.008 0.992 42 H 0.258 0.742 43 H 0.058 0.942 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.009 -8.575 -15.926 18.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.277 6.277 3 C 0.305 3.695 4 O -0.390 6.390 5 C -0.095 4.095 6 C -0.150 4.150 7 C -0.186 4.186 8 C -0.030 4.030 9 N -0.314 5.314 10 C -0.053 4.053 11 C 0.068 3.932 12 C -0.176 4.176 13 C -0.189 4.189 14 C -0.546 4.546 15 H 0.069 0.931 16 C -0.136 4.136 17 N -0.523 5.523 18 Si 0.716 3.284 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.205 1.205 22 C -0.140 4.140 23 C -0.141 4.141 24 H 0.079 0.921 25 H 0.118 0.882 26 H 0.082 0.918 27 H 0.123 0.877 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.159 0.841 34 H 0.031 0.969 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.091 0.909 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.101 0.899 41 H 0.027 0.973 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.088 -7.549 -15.926 18.344 hybrid contribution 0.190 -1.138 1.084 1.583 sum -4.898 -8.686 -14.842 17.881 Atomic orbital electron populations 1.23249 0.76654 1.03518 1.02557 1.86515 1.23218 1.33809 1.84188 1.24011 0.92274 0.81181 0.71983 1.90672 1.67182 1.36337 1.44806 1.21167 0.86160 1.00375 1.01771 1.21527 0.96624 1.00720 0.96105 1.22202 0.94654 0.99277 1.02494 1.21587 0.99189 0.90262 0.91982 1.60759 1.06246 1.60328 1.04029 1.22165 0.95420 0.97131 0.90618 1.18086 0.92678 0.92429 0.90008 1.21630 0.98005 0.98326 0.99650 1.21831 0.98166 0.98424 1.00489 1.21076 1.06726 1.32675 0.94078 0.93104 1.24884 0.95125 0.95103 0.98439 1.69830 1.23628 1.34868 1.23984 0.86735 0.81191 0.78150 0.82303 1.20423 1.21396 1.20514 1.21514 0.94166 1.01722 0.96645 1.21421 0.96527 0.92265 1.03866 0.92077 0.88248 0.91790 0.87699 0.91018 0.90718 0.91604 0.91226 0.90606 0.84057 0.96948 0.92651 0.96105 0.90854 0.96343 0.96297 0.89860 0.97277 0.93172 0.92340 0.90633 0.91589 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.16 10.47 -39.27 -0.41 -4.58 16 3 C 0.46 6.02 7.26 36.01 0.26 6.28 16 4 O -0.50 -7.95 15.73 -18.75 -0.29 -8.25 16 5 C -0.08 -0.85 2.63 -91.77 -0.24 -1.09 16 6 C -0.11 -1.32 4.88 -26.73 -0.13 -1.45 16 7 C -0.15 -1.74 5.52 -26.73 -0.15 -1.89 16 8 C 0.08 1.09 2.85 -67.72 -0.19 0.90 16 9 N -0.68 -11.71 4.98 -106.74 -0.53 -12.25 16 10 C 0.07 1.53 4.38 -3.83 -0.02 1.52 16 11 C 0.07 1.66 0.57 -155.66 -0.09 1.57 16 12 C -0.12 -2.91 8.09 37.16 0.30 -2.61 16 13 C -0.13 -3.13 7.92 37.16 0.29 -2.83 16 14 C -0.51 -13.65 8.01 -34.44 -0.28 -13.92 16 15 H 0.05 1.36 7.74 -52.49 -0.41 0.96 16 16 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 17 N -0.88 -24.65 9.35 55.43 0.52 -24.13 16 18 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C -0.10 -1.21 5.64 -26.75 -0.15 -1.36 16 23 C -0.10 -1.28 4.25 -26.76 -0.11 -1.39 16 24 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 27 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.07 0.99 6.26 -51.93 -0.32 0.67 16 29 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.91 7.45 -51.93 -0.39 0.52 16 32 H 0.08 1.05 7.80 -51.93 -0.41 0.64 16 33 H 0.34 5.93 3.60 -39.29 -0.14 5.79 16 34 H 0.01 0.25 7.43 -51.93 -0.39 -0.13 16 35 H 0.05 1.16 8.06 -51.93 -0.42 0.74 16 36 H 0.02 0.47 7.60 -51.93 -0.39 0.07 16 37 H 0.07 1.98 6.07 -51.92 -0.32 1.67 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.02 0.43 8.14 -51.92 -0.42 0.00 16 40 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 41 H 0.01 0.18 6.57 -51.93 -0.34 -0.16 16 42 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 46 H 0.08 1.25 7.16 -51.93 -0.37 0.88 16 LS Contribution 348.70 15.07 5.25 5.25 Total: -1.00 -29.11 348.70 -8.00 -37.11 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -7.99 Total: 3.90 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 0.47 Total: -13.23 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: -0.01 Total: -36.38 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.71 Total: -12.82 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.11 -8.00 -37.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459729654.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.289 kcal (2) G-P(sol) polarization free energy of solvation -29.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds