Wall clock time and date at job start Tue Mar 31 2020 07:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47150 * 2 1 4 4 H 1.09007 * 109.47161 * 305.25599 * 3 2 1 5 5 C 1.52993 * 109.47137 * 65.25457 * 3 2 1 6 6 C 1.53001 * 109.47216 * 185.25449 * 3 2 1 7 7 H 1.09001 * 109.47301 * 185.22156 * 6 3 2 8 8 O 1.42898 * 109.47342 * 305.22412 * 6 3 2 9 9 C 1.42898 * 113.99820 * 255.81159 * 8 6 3 10 10 C 1.50710 * 109.46888 * 65.21974 * 6 3 2 11 11 O 1.21281 * 119.99979 * 248.34505 * 10 6 3 12 12 N 1.34772 * 119.99631 * 68.35126 * 10 6 3 13 13 C 1.46921 * 120.63731 * 4.70676 * 12 10 6 14 14 C 1.53628 * 108.54123 * 126.37016 * 13 12 10 15 15 C 1.53040 * 109.24020 * 54.86398 * 14 13 12 16 16 C 1.50699 * 109.44714 * 178.49438 * 15 14 13 17 17 H 1.08001 * 119.99571 * 120.05985 * 16 15 14 18 18 C 1.37875 * 120.00059 * 300.06067 * 16 15 14 19 19 N 1.31512 * 120.00134 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99803 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47604 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47590 * 119.99848 * 20 18 16 23 23 H 1.48500 * 109.46901 * 239.99574 * 20 18 16 24 24 C 1.53042 * 109.53420 * 298.50850 * 15 14 13 25 25 C 1.46930 * 120.62352 * 184.99589 * 12 10 6 26 26 H 1.09004 * 109.47168 * 59.99728 * 1 2 3 27 27 H 1.09006 * 109.46697 * 300.00209 * 1 2 3 28 28 H 1.08999 * 109.47244 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47497 * 119.99921 * 2 1 3 30 30 H 1.09004 * 109.47086 * 240.00148 * 2 1 3 31 31 H 1.09008 * 109.47501 * 175.71529 * 5 3 2 32 32 H 1.08999 * 109.47470 * 295.71797 * 5 3 2 33 33 H 1.08997 * 109.47433 * 55.72026 * 5 3 2 34 34 H 1.09004 * 109.47507 * 65.21114 * 9 8 6 35 35 H 1.08997 * 109.47368 * 185.21410 * 9 8 6 36 36 H 1.08998 * 109.47505 * 305.21688 * 9 8 6 37 37 H 1.09000 * 109.59136 * 246.20693 * 13 12 10 38 38 H 1.09005 * 109.58050 * 6.63739 * 13 12 10 39 39 H 1.09000 * 109.63835 * 294.86803 * 14 13 12 40 40 H 1.09004 * 109.42707 * 174.72610 * 14 13 12 41 41 H 1.08996 * 109.46288 * 58.52818 * 15 14 13 42 42 H 0.97001 * 119.99713 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.49821 * 301.40807 * 24 15 14 44 44 H 1.09008 * 109.51920 * 181.33691 * 24 15 14 45 45 H 1.08996 * 109.58899 * 353.36443 * 25 12 10 46 46 H 1.09007 * 109.58559 * 113.65621 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6018 1.9828 -0.8392 5 6 1.6408 2.1246 1.3100 6 6 3.5643 1.4445 -0.1321 7 1 3.9357 2.4651 -0.0391 8 8 4.1329 0.6349 0.8990 9 6 4.7217 1.3813 1.9659 10 6 3.9526 0.8893 -1.4783 11 8 4.5172 -0.1815 -1.5527 12 7 3.6724 1.5828 -2.5995 13 6 3.0825 2.9261 -2.5212 14 6 3.9572 3.8919 -3.3350 15 6 4.1099 3.3551 -4.7600 16 6 4.9366 4.3178 -5.5729 17 1 5.8648 3.9903 -6.0177 18 6 4.5081 5.6164 -5.7488 19 7 3.3777 6.0149 -5.2076 20 14 5.5326 6.8094 -6.7571 21 1 6.7501 6.1193 -7.2538 22 1 4.7337 7.2960 -7.9104 23 1 5.9288 7.9616 -5.9081 24 6 4.8050 1.9922 -4.7217 25 6 3.9452 1.0071 -3.9235 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 2.0686 3.1267 1.3431 32 1 0.5544 2.1912 1.3686 33 1 2.0149 1.5420 2.1518 34 1 3.9458 1.9387 2.4908 35 1 5.2112 0.6984 2.6602 36 1 5.4571 2.0762 1.5606 37 1 2.0737 2.9069 -2.9333 38 1 3.0485 3.2501 -1.4809 39 1 4.9398 3.9760 -2.8706 40 1 3.4831 4.8730 -3.3647 41 1 3.1253 3.2479 -5.2151 42 1 3.0762 6.9284 -5.3317 43 1 5.7796 2.0942 -4.2444 44 1 4.9350 1.6209 -5.7383 45 1 4.4805 0.0646 -3.8089 46 1 3.0051 0.8322 -4.4467 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527254992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:26 Heat of formation + Delta-G solvation = -101.364829 kcal Electronic energy + Delta-G solvation = -24204.276908 eV Core-core repulsion = 20900.328622 eV Total energy + Delta-G solvation = -3303.948286 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.26899 -38.05991 -36.56398 -35.46277 -33.50702 -31.50574 -30.32591 -29.82683 -28.31681 -26.39030 -25.49742 -23.91491 -22.88573 -22.23571 -20.38005 -19.76758 -18.50203 -17.08239 -16.49457 -16.21984 -15.88772 -15.27917 -14.96295 -14.56184 -14.29791 -14.18219 -13.70961 -13.30055 -13.11474 -12.94607 -12.84934 -12.53749 -12.40960 -12.18457 -12.09880 -11.80151 -11.59753 -11.38804 -11.32135 -11.11607 -10.98647 -10.64969 -10.62167 -10.53609 -10.37109 -10.15185 -9.85855 -9.64761 -9.19342 -9.08977 -8.89258 -8.41425 -8.00318 -6.06635 -4.12458 2.96070 3.15935 3.24901 3.33675 3.38003 4.02186 4.38394 4.63653 4.69673 4.81336 5.05181 5.13282 5.22999 5.30483 5.31032 5.45158 5.47522 5.52686 5.56245 5.59714 5.66037 5.79486 5.87452 5.92917 5.95319 5.98701 6.03945 6.10804 6.14456 6.23059 6.33396 6.41612 6.44638 6.63505 6.86085 6.98593 7.06677 7.14448 7.25754 7.63260 7.88349 7.91001 8.00355 8.37119 8.58777 8.91296 9.52949 10.98956 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.022529 B = 0.004377 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.564975 B = 6395.602404 C = 6497.614846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.106 4.106 4 H 0.089 0.911 5 C -0.148 4.148 6 C 0.077 3.923 7 H 0.086 0.914 8 O -0.354 6.354 9 C 0.025 3.975 10 C 0.509 3.491 11 O -0.539 6.539 12 N -0.599 5.599 13 C 0.101 3.899 14 C -0.124 4.124 15 C 0.048 3.952 16 C -0.511 4.511 17 H 0.055 0.945 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.890 3.110 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.285 1.285 24 C -0.123 4.123 25 C 0.113 3.887 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.042 0.958 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.039 0.961 40 H 0.105 0.895 41 H 0.028 0.972 42 H 0.260 0.740 43 H 0.052 0.948 44 H 0.060 0.940 45 H 0.078 0.922 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.656 -6.158 12.673 14.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.125 4.125 4 H 0.107 0.893 5 C -0.205 4.205 6 C 0.016 3.984 7 H 0.104 0.896 8 O -0.272 6.272 9 C -0.072 4.072 10 C 0.296 3.704 11 O -0.416 6.416 12 N -0.333 5.333 13 C -0.021 4.021 14 C -0.163 4.163 15 C 0.030 3.970 16 C -0.549 4.549 17 H 0.074 0.926 18 C -0.139 4.139 19 N -0.532 5.532 20 Si 0.718 3.282 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.161 4.161 25 C -0.009 4.009 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.123 0.877 41 H 0.046 0.954 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.096 0.904 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.464 -6.774 12.640 15.019 hybrid contribution 0.567 1.234 -0.526 1.457 sum -3.896 -5.540 12.113 13.878 Atomic orbital electron populations 1.21822 0.95989 1.01402 1.01658 1.21428 0.95239 0.95363 1.02969 1.21642 0.92902 0.98172 0.99752 0.89305 1.21919 1.01781 0.99944 0.96881 1.22084 0.94261 0.94920 0.87166 0.89632 1.87995 1.75745 1.32063 1.31372 1.22965 0.97018 0.97069 0.90121 1.20433 0.79159 0.85215 0.85585 1.90647 1.41786 1.22353 1.86845 1.48190 1.61828 1.17627 1.05652 1.22218 0.97850 0.81694 1.00372 1.22115 0.97544 1.00002 0.96596 1.18636 0.96088 0.89932 0.92350 1.21253 1.07068 0.95409 1.31169 0.92632 1.24951 0.95022 0.98243 0.95723 1.69839 1.20952 1.17613 1.44750 0.86567 0.80461 0.81076 0.80092 1.19822 1.21026 1.21075 1.22004 0.98577 0.97319 0.98217 1.21692 0.99723 0.97514 0.81984 0.92805 0.92703 0.92954 0.91186 0.91947 0.92678 0.91898 0.92151 0.93733 0.89563 0.93924 0.91721 0.91661 0.94261 0.87714 0.95393 0.93034 0.92965 0.92122 0.90356 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.67 37.16 0.36 -1.22 16 2 C -0.11 -1.43 5.01 -26.73 -0.13 -1.56 16 3 C -0.11 -1.30 1.87 -90.62 -0.17 -1.47 16 4 H 0.09 1.11 6.19 -51.92 -0.32 0.79 16 5 C -0.15 -1.45 7.94 37.15 0.29 -1.16 16 6 C 0.08 1.12 1.50 -27.88 -0.04 1.08 16 7 H 0.09 1.15 6.48 -51.93 -0.34 0.81 16 8 O -0.35 -5.24 8.84 -55.00 -0.49 -5.73 16 9 C 0.02 0.27 10.47 101.05 1.06 1.33 16 10 C 0.51 9.23 5.96 -10.98 -0.07 9.17 16 11 O -0.54 -11.57 15.94 -14.21 -0.23 -11.80 16 12 N -0.60 -10.75 2.97 -172.49 -0.51 -11.26 16 13 C 0.10 1.74 5.01 -3.49 -0.02 1.72 16 14 C -0.12 -2.67 5.17 -26.38 -0.14 -2.80 16 15 C 0.05 1.13 2.06 -91.73 -0.19 0.94 16 16 C -0.51 -13.45 8.56 -34.44 -0.29 -13.75 16 17 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 19 N -0.89 -24.03 11.31 55.43 0.63 -23.40 16 20 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 24 C -0.12 -2.52 5.30 -26.61 -0.14 -2.66 16 25 C 0.11 2.08 6.44 -3.71 -0.02 2.05 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.50 6.67 -51.93 -0.35 0.16 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.91 7.73 -51.93 -0.40 0.51 16 30 H 0.06 0.94 7.23 -51.93 -0.38 0.57 16 31 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.06 0.55 6.78 -51.93 -0.35 0.20 16 33 H 0.06 0.58 6.72 -51.93 -0.35 0.23 16 34 H 0.04 0.39 6.34 -51.93 -0.33 0.06 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.04 0.45 8.02 -51.93 -0.42 0.03 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 0.96 5.11 -51.93 -0.27 0.70 16 39 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.10 2.49 6.03 -51.93 -0.31 2.18 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 43 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 45 H 0.08 1.46 7.00 -51.93 -0.36 1.10 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 347.94 15.07 5.24 5.24 Total: -1.00 -29.56 347.94 -7.91 -37.47 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.94 Total: 0.66 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 0.41 Total: -6.79 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.12 Total: -34.66 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.71 Total: -17.53 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.56 -7.91 -37.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527254992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.894 kcal (2) G-P(sol) polarization free energy of solvation -29.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds