Wall clock time and date at job start Tue Mar 31 2020 05:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53011 * 109.46929 * 2 1 4 4 C 1.52998 * 109.46876 * 179.88747 * 3 2 1 5 5 H 1.09000 * 109.47302 * 305.91920 * 4 3 2 6 6 O 1.42908 * 109.47143 * 65.92415 * 4 3 2 7 7 C 1.42899 * 113.99427 * 259.00124 * 6 4 3 8 8 C 1.53002 * 109.46661 * 174.86831 * 7 6 4 9 9 C 1.50699 * 109.47125 * 185.91740 * 4 3 2 10 10 O 1.21276 * 120.00334 * 245.00773 * 9 4 3 11 11 N 1.34782 * 119.99754 * 64.99957 * 9 4 3 12 12 C 1.46922 * 120.62864 * 359.72447 * 11 9 4 13 13 C 1.53620 * 108.54603 * 126.36812 * 12 11 9 14 14 C 1.53042 * 109.24256 * 54.85004 * 13 12 11 15 15 C 1.50699 * 109.44876 * 178.49919 * 14 13 12 16 16 H 1.08001 * 119.99762 * 120.06956 * 15 14 13 17 17 C 1.37881 * 120.00188 * 300.06370 * 15 14 13 18 18 N 1.31516 * 119.99868 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99840 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47155 * 90.00025 * 19 17 15 21 21 H 1.48505 * 109.46889 * 210.00006 * 19 17 15 22 22 H 1.48495 * 109.47432 * 329.99921 * 19 17 15 23 23 C 1.53041 * 109.54120 * 298.51679 * 14 13 12 24 24 C 1.46922 * 120.63117 * 180.02562 * 11 9 4 25 25 H 1.08998 * 109.46724 * 60.00248 * 1 2 3 26 26 H 1.09000 * 109.46621 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47171 * 300.00164 * 1 2 3 28 28 H 1.08998 * 109.47913 * 239.99880 * 2 1 3 29 29 H 1.09004 * 109.47372 * 119.99536 * 2 1 3 30 30 H 1.09003 * 109.46788 * 299.88540 * 3 2 1 31 31 H 1.08992 * 109.46764 * 59.88983 * 3 2 1 32 32 H 1.09002 * 109.47479 * 294.86494 * 7 6 4 33 33 H 1.08998 * 109.47366 * 54.86870 * 7 6 4 34 34 H 1.08995 * 109.47480 * 299.99710 * 8 7 6 35 35 H 1.08999 * 109.47095 * 60.00481 * 8 7 6 36 36 H 1.09007 * 109.46713 * 180.02562 * 8 7 6 37 37 H 1.09009 * 109.58666 * 246.19834 * 12 11 9 38 38 H 1.09001 * 109.58797 * 6.62339 * 12 11 9 39 39 H 1.09007 * 109.63475 * 294.86600 * 13 12 11 40 40 H 1.08995 * 109.43544 * 174.72248 * 13 12 11 41 41 H 1.08999 * 109.45771 * 58.53701 * 14 13 12 42 42 H 0.97001 * 119.99808 * 179.97438 * 18 17 15 43 43 H 1.08995 * 109.49388 * 301.41347 * 23 14 13 44 44 H 1.08999 * 109.49810 * 181.31569 * 23 14 13 45 45 H 1.09005 * 109.58796 * 353.37620 * 24 11 9 46 46 H 1.08997 * 109.58755 * 113.65720 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0028 5 1 3.9318 0.8403 0.8361 6 8 4.0486 0.8921 -1.2261 7 6 4.4770 -0.4675 -1.1260 8 6 4.8455 -0.9896 -2.5161 9 6 4.0721 2.8559 0.1493 10 8 4.6942 3.3751 -0.7530 11 7 3.8295 3.5431 1.2831 12 6 3.0719 2.9299 2.3825 13 6 3.9014 3.0434 3.6705 14 6 4.2720 4.5098 3.9042 15 6 5.0546 4.6314 5.1862 16 1 6.0586 5.0291 5.1703 17 6 4.4890 4.2351 6.3795 18 7 5.1722 4.3408 7.4983 19 14 2.7526 3.5467 6.4070 20 1 2.8013 2.0735 6.2267 21 1 2.1144 3.8653 7.7095 22 1 1.9618 4.1541 5.3066 23 6 5.1234 5.0149 2.7371 24 6 4.3120 4.9219 1.4406 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8935 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6783 1.9558 -0.8911 31 1 1.6751 1.9569 0.8889 32 1 5.3477 -0.5270 -0.4729 33 1 3.6705 -1.0730 -0.7124 34 1 3.9749 -0.9301 -3.1692 35 1 5.6520 -0.3841 -2.9296 36 1 5.1718 -2.0269 -2.4399 37 1 2.1233 3.4520 2.5084 38 1 2.8862 1.8797 2.1571 39 1 4.8104 2.4495 3.5743 40 1 3.3148 2.6777 4.5131 41 1 3.3630 5.1070 3.9756 42 1 4.7741 4.0623 8.3379 43 1 6.0207 4.4023 2.6497 44 1 5.4064 6.0523 2.9155 45 1 4.9449 5.1866 0.5935 46 1 3.4624 5.6030 1.4888 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529005368.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:15 Heat of formation + Delta-G solvation = -94.017750 kcal Electronic energy + Delta-G solvation = -23913.493927 eV Core-core repulsion = 20609.864235 eV Total energy + Delta-G solvation = -3303.629693 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.31584 -38.24055 -36.86929 -34.97466 -33.52007 -31.96750 -31.42702 -30.70194 -29.00708 -26.62395 -24.77847 -23.10785 -22.79144 -22.43245 -21.31143 -20.09939 -18.63817 -17.40725 -16.86829 -16.62496 -16.04046 -15.58839 -15.06551 -14.77543 -14.58074 -14.20976 -13.70899 -13.53981 -13.36484 -13.25357 -12.89794 -12.66024 -12.59302 -12.29102 -12.25678 -12.18615 -11.99985 -11.77275 -11.41321 -11.36647 -11.21041 -11.06307 -10.82429 -10.68868 -10.23220 -10.21362 -9.87347 -9.78720 -9.38199 -9.20699 -9.08503 -8.61187 -8.22040 -6.13451 -4.12885 2.79014 2.93374 3.16516 3.27493 3.31944 3.79123 4.32607 4.44328 4.65708 4.71660 4.85170 4.91943 4.96890 5.10204 5.14222 5.21913 5.26388 5.32473 5.40630 5.50246 5.55854 5.57829 5.62771 5.68535 5.74828 5.76872 5.79482 5.92138 5.92613 5.95138 6.01819 6.10352 6.14976 6.25882 6.56696 6.60363 6.71363 6.83350 7.04388 7.14708 7.43585 7.65875 7.70462 8.40336 8.46272 8.91227 9.48240 11.00008 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.018560 B = 0.004907 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.276712 B = 5704.483984 C = 6375.250971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.142 4.142 4 C 0.075 3.925 5 H 0.087 0.913 6 O -0.355 6.355 7 C 0.049 3.951 8 C -0.149 4.149 9 C 0.511 3.489 10 O -0.532 6.532 11 N -0.600 5.600 12 C 0.096 3.904 13 C -0.136 4.136 14 C 0.015 3.985 15 C -0.513 4.513 16 H 0.074 0.926 17 C 0.068 3.932 18 N -0.900 5.900 19 Si 0.885 3.115 20 H -0.278 1.278 21 H -0.297 1.297 22 H -0.264 1.264 23 C -0.113 4.113 24 C 0.110 3.890 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.029 0.971 42 H 0.264 0.736 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.084 0.916 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.949 -10.399 -14.790 19.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.180 4.180 4 C 0.014 3.986 5 H 0.105 0.895 6 O -0.273 6.273 7 C -0.028 4.028 8 C -0.207 4.207 9 C 0.297 3.703 10 O -0.409 6.409 11 N -0.334 5.334 12 C -0.027 4.027 13 C -0.174 4.174 14 C -0.004 4.004 15 C -0.551 4.551 16 H 0.092 0.908 17 C -0.133 4.133 18 N -0.538 5.538 19 Si 0.716 3.284 20 H -0.206 1.206 21 H -0.224 1.224 22 H -0.189 1.189 23 C -0.151 4.151 24 C -0.012 4.012 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.047 0.953 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.102 0.898 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.598 -10.040 -15.261 19.785 hybrid contribution -0.921 -0.656 0.665 1.311 sum -8.519 -10.695 -14.597 20.000 Atomic orbital electron populations 1.21753 0.95395 1.01652 1.02053 1.21618 0.96385 0.96176 1.02204 1.22243 0.93084 0.98444 1.04189 1.21926 0.94762 0.93134 0.88779 0.89544 1.88023 1.83147 1.26412 1.29723 1.22719 0.98404 0.83013 0.98667 1.21718 1.02533 1.00520 0.95884 1.20433 0.80071 0.87627 0.82128 1.90665 1.40436 1.69990 1.39773 1.48092 1.54846 1.15226 1.15272 1.22203 0.95143 0.97476 0.87880 1.22480 0.99171 1.01937 0.93800 1.19130 0.96078 0.90721 0.94498 1.21053 1.02253 1.42466 0.89360 0.90817 1.25050 0.97388 0.95308 0.95578 1.69900 1.37411 1.48028 0.98496 0.86877 0.85610 0.79124 0.76830 1.20562 1.22421 1.18950 1.21833 0.98540 1.01624 0.93100 1.21785 0.98633 0.80961 0.99833 0.92640 0.92687 0.92518 0.91334 0.91906 0.90391 0.89581 0.93276 0.92842 0.91917 0.91655 0.91155 0.91437 0.90550 0.91573 0.92370 0.95324 0.92635 0.92285 0.91245 0.89804 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.16 0.37 -0.86 16 2 C -0.13 -1.15 5.02 -26.72 -0.13 -1.28 16 3 C -0.14 -1.59 4.45 -26.73 -0.12 -1.71 16 4 C 0.08 1.02 1.84 -27.88 -0.05 0.97 16 5 H 0.09 1.06 7.00 -51.93 -0.36 0.70 16 6 O -0.35 -5.06 9.30 -55.09 -0.51 -5.58 16 7 C 0.05 0.52 5.99 37.16 0.22 0.74 16 8 C -0.15 -1.34 10.28 37.16 0.38 -0.96 16 9 C 0.51 8.74 7.12 -10.98 -0.08 8.67 16 10 O -0.53 -10.99 15.92 -14.30 -0.23 -11.21 16 11 N -0.60 -9.98 2.97 -172.48 -0.51 -10.50 16 12 C 0.10 1.49 4.91 -3.49 -0.02 1.47 16 13 C -0.14 -2.65 4.86 -26.39 -0.13 -2.78 16 14 C 0.01 0.32 1.65 -91.73 -0.15 0.17 16 15 C -0.51 -13.83 9.14 -34.44 -0.31 -14.14 16 16 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 17 C 0.07 1.89 5.45 -17.82 -0.10 1.80 16 18 N -0.90 -26.87 13.96 55.43 0.77 -26.10 16 19 Si 0.89 20.65 24.38 -169.99 -4.14 16.51 16 20 H -0.28 -6.22 6.86 56.52 0.39 -5.84 16 21 H -0.30 -7.06 7.11 56.52 0.40 -6.65 16 22 H -0.26 -5.77 6.53 56.52 0.37 -5.40 16 23 C -0.11 -2.18 5.30 -26.59 -0.14 -2.32 16 24 C 0.11 1.87 6.43 -3.69 -0.02 1.85 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.62 6.27 -51.93 -0.33 0.29 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.09 0.94 5.42 -51.93 -0.28 0.66 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.47 5.91 -51.93 -0.31 0.16 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 37 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 38 H 0.08 0.98 4.74 -51.93 -0.25 0.74 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.06 1.19 3.24 -51.93 -0.17 1.03 16 41 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 45 H 0.08 1.45 7.01 -51.93 -0.36 1.09 16 46 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 346.45 15.07 5.22 5.22 Total: -1.00 -31.74 346.45 -7.63 -39.38 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -7.95 Total: 0.68 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -0.28 Total: -8.40 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.26 Total: -36.59 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.74 Total: -16.79 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.14 Total: 16.51 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.74 -7.63 -39.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529005368.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.640 kcal (2) G-P(sol) polarization free energy of solvation -31.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds