Wall clock time and date at job start Tue Mar 31 2020 05:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47452 * 2 1 4 4 C 1.52998 * 109.47172 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47199 * 54.85092 * 4 3 2 6 6 O 1.42901 * 109.46866 * 294.85033 * 4 3 2 7 7 C 1.42903 * 113.99739 * 150.00154 * 6 4 3 8 8 C 1.52999 * 109.47050 * 180.02562 * 7 6 4 9 9 C 1.50706 * 109.46830 * 174.85316 * 4 3 2 10 10 O 1.21280 * 119.99796 * 112.43912 * 9 4 3 11 11 N 1.34768 * 119.99793 * 292.42894 * 9 4 3 12 12 C 1.46926 * 120.63546 * 355.43417 * 11 9 4 13 13 C 1.53617 * 108.54636 * 126.36539 * 12 11 9 14 14 C 1.53036 * 109.24224 * 54.85680 * 13 12 11 15 15 C 1.50708 * 109.45038 * 178.49682 * 14 13 12 16 16 H 1.08005 * 119.99640 * 120.06129 * 15 14 13 17 17 C 1.37872 * 119.99967 * 300.05904 * 15 14 13 18 18 N 1.31514 * 119.99959 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99985 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46904 * 90.00476 * 19 17 15 21 21 H 1.48498 * 109.47316 * 210.00456 * 19 17 15 22 22 H 1.48498 * 109.47337 * 330.00666 * 19 17 15 23 23 C 1.53043 * 109.54016 * 298.51153 * 14 13 12 24 24 C 1.46932 * 120.62638 * 175.71116 * 11 9 4 25 25 H 1.09005 * 109.46750 * 59.99562 * 1 2 3 26 26 H 1.08990 * 109.47592 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47017 * 300.00538 * 1 2 3 28 28 H 1.09000 * 109.46503 * 239.99952 * 2 1 3 29 29 H 1.08995 * 109.46804 * 120.00344 * 2 1 3 30 30 H 1.09002 * 109.46754 * 59.99921 * 3 2 1 31 31 H 1.09007 * 109.46938 * 300.00480 * 3 2 1 32 32 H 1.09001 * 109.47171 * 300.00065 * 7 6 4 33 33 H 1.08996 * 109.46841 * 59.99852 * 7 6 4 34 34 H 1.09003 * 109.47241 * 179.97438 * 8 7 6 35 35 H 1.09001 * 109.47159 * 300.00038 * 8 7 6 36 36 H 1.09002 * 109.47386 * 59.99747 * 8 7 6 37 37 H 1.08996 * 109.58330 * 246.20236 * 12 11 9 38 38 H 1.09002 * 109.58496 * 6.62204 * 12 11 9 39 39 H 1.08996 * 109.63478 * 294.86714 * 13 12 11 40 40 H 1.08997 * 109.43230 * 174.72177 * 13 12 11 41 41 H 1.09003 * 109.46414 * 58.53197 * 14 13 12 42 42 H 0.96997 * 120.00009 * 179.97438 * 18 17 15 43 43 H 1.08996 * 109.49860 * 301.41463 * 23 14 13 44 44 H 1.08994 * 109.52544 * 181.33233 * 23 14 13 45 45 H 1.08992 * 109.58764 * 353.37358 * 24 11 9 46 46 H 1.09002 * 109.58852 * 113.66202 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9330 0.8509 -0.8412 6 8 4.0468 0.8760 1.2216 7 6 5.3064 0.2117 1.1020 8 6 5.7164 -0.3532 2.4634 9 6 4.0724 2.8575 -0.1281 10 8 4.6529 3.3808 0.7993 11 7 3.8766 3.5415 -1.2727 12 6 3.2649 2.8899 -2.4390 13 6 2.0663 3.7342 -2.8975 14 6 2.5288 5.1707 -3.1514 15 6 1.3641 5.9946 -3.6370 16 1 1.0430 6.8594 -3.0754 17 6 0.7084 5.6442 -4.7981 18 7 1.0992 4.5908 -5.4817 19 14 -0.7357 6.6650 -5.3997 20 1 -0.2421 7.7405 -6.2969 21 1 -1.6812 5.7947 -6.1438 22 1 -1.4319 7.2714 -4.2366 23 6 3.0714 5.7709 -1.8523 24 6 4.2765 4.9513 -1.3801 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0275 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 5.2210 -0.6022 0.3820 33 1 6.0602 0.9211 0.7606 34 1 6.6770 -0.8603 2.3721 35 1 5.8017 0.4604 3.1837 36 1 4.9624 -1.0627 2.8044 37 1 3.9962 2.8209 -3.2442 38 1 2.9262 1.8911 -2.1636 39 1 1.2985 3.7306 -2.1239 40 1 1.6585 3.3154 -3.8175 41 1 3.3141 5.1712 -3.9074 42 1 0.6377 4.3441 -6.2984 43 1 2.2942 5.7481 -1.0885 44 1 3.3789 6.8017 -2.0278 45 1 4.6053 5.3130 -0.4059 46 1 5.0902 5.0466 -2.0990 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529005369.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:19 Heat of formation + Delta-G solvation = -106.755796 kcal Electronic energy + Delta-G solvation = -23921.882750 eV Core-core repulsion = 20617.700694 eV Total energy + Delta-G solvation = -3304.182056 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.14456 -37.89479 -36.54818 -34.96195 -33.48326 -31.70629 -31.15760 -30.18824 -28.81499 -26.33257 -24.48162 -22.92883 -22.75532 -22.18511 -21.09712 -20.00502 -18.36290 -17.38377 -16.73222 -16.25313 -15.43498 -15.35168 -14.92641 -14.60734 -14.56875 -14.08360 -13.46982 -13.28717 -13.25232 -12.91439 -12.75122 -12.57750 -12.33602 -12.14857 -11.87634 -11.79136 -11.60217 -11.35907 -11.25152 -11.06304 -10.97455 -10.83172 -10.66831 -10.51257 -10.42328 -10.24404 -10.08692 -9.66795 -9.20407 -9.08284 -8.82286 -8.40923 -8.01910 -6.06444 -4.12458 2.90761 3.26139 3.29908 3.33481 3.37152 3.77976 4.38431 4.67472 4.87748 4.92026 5.02016 5.12780 5.18525 5.23073 5.28289 5.33496 5.51101 5.55010 5.62565 5.74627 5.78112 5.86330 5.87773 5.90104 5.96134 6.03163 6.03810 6.13203 6.16701 6.21408 6.25888 6.38841 6.43473 6.63570 6.85684 6.99363 7.08868 7.14693 7.25285 7.62903 7.88056 7.89986 8.00252 8.36760 8.55465 8.90912 9.52939 10.99026 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.021001 B = 0.004595 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.942002 B = 6091.506850 C = 6964.744150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.120 4.120 4 C 0.080 3.920 5 H 0.081 0.919 6 O -0.356 6.356 7 C 0.055 3.945 8 C -0.147 4.147 9 C 0.487 3.513 10 O -0.545 6.545 11 N -0.598 5.598 12 C 0.095 3.905 13 C -0.123 4.123 14 C 0.049 3.951 15 C -0.512 4.512 16 H 0.055 0.945 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.123 4.123 24 C 0.112 3.888 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.041 0.959 40 H 0.105 0.895 41 H 0.027 0.973 42 H 0.260 0.740 43 H 0.052 0.948 44 H 0.060 0.940 45 H 0.077 0.923 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.463 -11.000 8.309 14.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.158 4.158 4 C 0.018 3.982 5 H 0.099 0.901 6 O -0.274 6.274 7 C -0.022 4.022 8 C -0.205 4.205 9 C 0.274 3.726 10 O -0.423 6.423 11 N -0.332 5.332 12 C -0.027 4.027 13 C -0.161 4.161 14 C 0.030 3.970 15 C -0.550 4.550 16 H 0.073 0.927 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.161 4.161 24 C -0.010 4.010 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.123 0.877 41 H 0.045 0.955 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.095 0.905 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.624 -10.819 8.820 14.704 hybrid contribution -0.639 0.572 -0.799 1.172 sum 3.985 -10.246 8.021 13.609 Atomic orbital electron populations 1.21767 0.95559 1.01441 1.02250 1.21455 0.96045 0.95893 1.02164 1.21863 0.90704 0.98636 1.04591 1.22026 0.96274 0.91418 0.88466 0.90119 1.87972 1.36282 1.72266 1.30834 1.22529 0.86063 0.95213 0.98346 1.21697 1.00980 1.01314 0.96470 1.21265 0.79885 0.88992 0.82432 1.90639 1.42419 1.70288 1.38914 1.48290 1.60094 1.12224 1.12636 1.22283 0.97336 0.96330 0.86716 1.22105 0.94052 0.98099 1.01861 1.18631 0.95892 0.91596 0.90857 1.21205 1.14641 1.11531 1.07593 0.92700 1.24944 0.97267 0.95160 0.96508 1.69828 1.41262 1.25566 1.16445 0.86625 0.82500 0.80195 0.78877 1.20732 1.21237 1.19966 1.22006 0.95770 0.98219 1.00108 1.21690 0.97790 0.80219 1.01345 0.92272 0.92874 0.92732 0.92147 0.91425 0.90559 0.88649 0.93558 0.93302 0.91318 0.91671 0.92007 0.91850 0.91196 0.94033 0.87718 0.95464 0.92977 0.92935 0.92144 0.90484 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 37.16 0.37 -1.27 16 2 C -0.12 -1.34 5.83 -26.73 -0.16 -1.49 16 3 C -0.12 -1.65 4.47 -26.73 -0.12 -1.77 16 4 C 0.08 1.17 1.67 -27.88 -0.05 1.12 16 5 H 0.08 1.03 6.98 -51.93 -0.36 0.67 16 6 O -0.36 -5.35 9.08 -55.03 -0.50 -5.85 16 7 C 0.06 0.67 6.46 37.16 0.24 0.91 16 8 C -0.15 -1.48 10.28 37.16 0.38 -1.10 16 9 C 0.49 8.81 7.02 -10.99 -0.08 8.73 16 10 O -0.54 -11.57 15.95 -14.24 -0.23 -11.80 16 11 N -0.60 -10.73 2.97 -172.50 -0.51 -11.24 16 12 C 0.10 1.64 5.50 -3.49 -0.02 1.62 16 13 C -0.12 -2.59 4.98 -26.39 -0.13 -2.72 16 14 C 0.05 1.13 2.06 -91.73 -0.19 0.94 16 15 C -0.51 -13.37 8.56 -34.44 -0.29 -13.66 16 16 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 17 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 18 N -0.89 -23.87 11.30 55.43 0.63 -23.24 16 19 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 23 C -0.12 -2.50 5.30 -26.61 -0.14 -2.64 16 24 C 0.11 2.06 6.42 -3.70 -0.02 2.04 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.77 7.83 -51.93 -0.41 0.36 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.10 1.39 5.13 -51.93 -0.27 1.12 16 32 H 0.05 0.47 8.08 -51.93 -0.42 0.05 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.07 1.02 4.55 -51.93 -0.24 0.79 16 39 H 0.04 0.89 7.55 -51.93 -0.39 0.49 16 40 H 0.10 2.46 6.03 -51.93 -0.31 2.15 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 43 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 45 H 0.08 1.44 7.03 -51.93 -0.37 1.07 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 357.14 15.07 5.38 5.38 Total: -1.00 -29.13 357.14 -8.77 -37.90 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -8.22 Total: 1.08 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -0.30 Total: -7.75 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.11 Total: -34.49 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.73 Total: -17.64 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.13 -8.77 -37.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529005369.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.855 kcal (2) G-P(sol) polarization free energy of solvation -29.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds