Wall clock time and date at job start Tue Mar 31 2020 06:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47350 * 2 1 4 4 H 1.09005 * 109.48104 * 304.98286 * 3 2 1 5 5 C 1.53090 * 109.48283 * 184.94704 * 3 2 1 6 6 C 1.53172 * 109.16411 * 182.40857 * 5 3 2 7 7 H 1.09000 * 109.54812 * 176.84486 * 6 5 3 8 8 C 1.50702 * 109.54483 * 297.11242 * 6 5 3 9 9 O 1.21285 * 119.99928 * 5.02366 * 8 6 5 10 10 N 1.34778 * 120.00087 * 185.02493 * 8 6 5 11 11 C 1.46500 * 120.00075 * 5.28676 * 10 8 6 12 12 C 1.50700 * 109.46731 * 96.43443 * 11 10 8 13 13 H 1.08001 * 120.00345 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99489 * 180.02562 * 12 11 10 15 15 N 1.31508 * 120.00298 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99547 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46902 * 60.00342 * 16 14 12 18 18 H 1.48498 * 109.47023 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47274 * 300.00132 * 16 14 12 20 20 C 1.46496 * 120.00015 * 185.28982 * 10 8 6 21 21 C 1.53004 * 109.47046 * 295.51229 * 20 10 8 22 22 C 1.53002 * 109.47252 * 55.50904 * 20 10 8 23 23 C 1.53181 * 109.03854 * 56.97824 * 6 5 3 24 24 C 1.53091 * 109.16181 * 303.01986 * 23 6 5 25 25 O 1.42901 * 109.47809 * 65.00080 * 3 2 1 26 26 H 1.09000 * 109.47172 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46384 * 299.99561 * 1 2 3 28 28 H 1.08994 * 109.47471 * 59.99843 * 1 2 3 29 29 H 1.08999 * 109.46418 * 239.99964 * 2 1 3 30 30 H 1.09003 * 109.47241 * 120.00148 * 2 1 3 31 31 H 1.09001 * 109.51746 * 302.31498 * 5 3 2 32 32 H 1.08994 * 109.52249 * 62.50400 * 5 3 2 33 33 H 1.08994 * 109.46926 * 216.43051 * 11 10 8 34 34 H 1.08997 * 109.46804 * 336.43554 * 11 10 8 35 35 H 0.97002 * 120.00536 * 180.02562 * 15 14 12 36 36 H 1.09003 * 109.47781 * 175.50942 * 20 10 8 37 37 H 1.08996 * 109.47080 * 67.96674 * 21 20 10 38 38 H 1.09004 * 109.46693 * 187.96271 * 21 20 10 39 39 H 1.08994 * 109.46819 * 307.96274 * 21 20 10 40 40 H 1.09006 * 109.47122 * 62.98557 * 22 20 10 41 41 H 1.09000 * 109.47479 * 182.98298 * 22 20 10 42 42 H 1.08997 * 109.47435 * 302.98559 * 22 20 10 43 43 H 1.08999 * 109.52323 * 183.11318 * 23 6 5 44 44 H 1.08993 * 109.52234 * 62.92277 * 23 6 5 45 45 H 1.09006 * 109.47983 * 177.58826 * 24 23 6 46 46 H 1.08999 * 109.48512 * 297.62557 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6058 1.9816 -0.8420 5 6 3.5659 1.4445 -0.1245 6 6 4.0735 2.8884 -0.0632 7 1 5.1630 2.8936 -0.0949 8 6 3.5295 3.6641 -1.2351 9 8 2.7351 3.1446 -1.9901 10 7 3.9259 4.9352 -1.4442 11 6 4.9705 5.5246 -0.6031 12 6 6.3018 5.4074 -1.2996 13 1 6.3635 4.9410 -2.2717 14 6 7.4411 5.8957 -0.6956 15 7 7.3661 6.4632 0.4884 16 14 9.0913 5.7498 -1.5586 17 1 9.0366 6.4696 -2.8564 18 1 10.1503 6.3473 -0.7061 19 1 9.3989 4.3172 -1.7997 20 6 3.3120 5.7275 -2.5126 21 6 3.6448 5.1006 -3.8681 22 6 1.7942 5.7526 -2.3213 23 6 3.5959 3.5309 1.2427 24 6 2.0689 3.4483 1.3143 25 8 1.6622 2.0815 1.2210 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.9989 0.8710 0.6952 32 1 3.8544 0.9971 -1.0756 33 1 4.7444 6.5761 -0.4262 34 1 5.0110 4.9963 0.3495 35 1 8.1675 6.8070 0.9131 36 1 3.6993 6.7459 -2.4784 37 1 3.1388 4.1394 -3.9578 38 1 3.3106 5.7631 -4.6666 39 1 4.7219 4.9529 -3.9453 40 1 1.5547 6.2470 -1.3798 41 1 1.3330 6.2973 -3.1451 42 1 1.4134 4.7315 -2.3026 43 1 3.9058 4.5756 1.2694 44 1 4.0295 2.9997 2.0899 45 1 1.7263 3.8656 2.2613 46 1 1.6351 4.0137 0.4896 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543748592.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:54 Heat of formation + Delta-G solvation = -99.671339 kcal Electronic energy + Delta-G solvation = -24785.287465 eV Core-core repulsion = 21481.412615 eV Total energy + Delta-G solvation = -3303.874851 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.36778 -38.18120 -35.41300 -34.09659 -33.53940 -32.75180 -31.12550 -29.49469 -27.10374 -26.60878 -25.41750 -23.51266 -23.10748 -22.01710 -20.97460 -20.22458 -17.62207 -16.69314 -16.08324 -16.03826 -15.76200 -15.25487 -14.66992 -14.41348 -14.09452 -13.88481 -13.53710 -13.37880 -13.08346 -12.84303 -12.71681 -12.31603 -12.08563 -11.86547 -11.71479 -11.67020 -11.50473 -11.36188 -11.14944 -10.99188 -10.92018 -10.79595 -10.69184 -10.67169 -10.37700 -10.25748 -10.05185 -9.96482 -9.61099 -9.10894 -8.60556 -8.43470 -7.69051 -6.20892 -4.27671 3.21919 3.27151 3.28526 3.39289 3.91241 4.11789 4.31359 4.93088 5.09971 5.13984 5.20764 5.27157 5.34823 5.39819 5.47505 5.61286 5.66648 5.71090 5.77483 5.86060 5.90834 5.99062 6.06277 6.08380 6.09872 6.17494 6.20347 6.25538 6.33509 6.34897 6.40016 6.43635 6.46292 6.51619 6.61266 6.75049 6.82089 6.88342 7.18194 7.59197 7.62241 7.74417 8.03889 8.38673 8.77348 9.03553 9.40072 10.85605 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.018662 B = 0.005725 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.003580 B = 4889.382430 C = 5473.339943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C 0.078 3.922 4 H 0.091 0.909 5 C -0.124 4.124 6 C -0.109 4.109 7 H 0.107 0.893 8 C 0.524 3.476 9 O -0.567 6.567 10 N -0.589 5.589 11 C 0.224 3.776 12 C -0.537 4.537 13 H 0.060 0.940 14 C 0.065 3.935 15 N -0.892 5.892 16 Si 0.896 3.104 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.276 1.276 20 C 0.149 3.851 21 C -0.161 4.161 22 C -0.168 4.168 23 C -0.153 4.153 24 C 0.064 3.936 25 O -0.385 6.385 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.031 0.969 34 H 0.055 0.945 35 H 0.266 0.734 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.048 0.952 39 H 0.058 0.942 40 H 0.047 0.953 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.329 -6.061 -0.055 11.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C 0.021 3.979 4 H 0.109 0.891 5 C -0.162 4.162 6 C -0.130 4.130 7 H 0.125 0.875 8 C 0.313 3.687 9 O -0.449 6.449 10 N -0.319 5.319 11 C 0.105 3.895 12 C -0.576 4.576 13 H 0.078 0.922 14 C -0.138 4.138 15 N -0.530 5.530 16 Si 0.723 3.277 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.201 1.201 20 C 0.045 3.955 21 C -0.219 4.219 22 C -0.226 4.226 23 C -0.191 4.191 24 C -0.013 4.013 25 O -0.305 6.305 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.114 0.886 44 H 0.094 0.906 45 H 0.107 0.893 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.708 -6.287 -0.149 11.567 hybrid contribution 1.541 0.361 -0.579 1.685 sum -8.167 -5.926 -0.728 10.117 Atomic orbital electron populations 1.21694 0.95721 1.00811 1.02192 1.21513 0.96323 0.95248 1.01987 1.22478 0.93745 0.93678 0.87982 0.89119 1.21951 0.96658 0.95302 1.02335 1.21302 1.03029 0.94831 0.93836 0.87517 1.20326 0.80850 0.81806 0.85760 1.90454 1.36804 1.69193 1.48473 1.48312 1.38274 1.11940 1.33341 1.19760 0.84470 0.94557 0.90734 1.21471 0.91869 1.39524 1.04702 0.92172 1.24925 0.99182 0.94783 0.94865 1.69896 1.29650 1.38807 1.14660 0.86591 0.83025 0.78536 0.79539 1.20162 1.21127 1.20136 1.20798 0.92226 0.95113 0.87385 1.22141 1.02214 1.01673 0.95835 1.22220 0.96173 1.03506 1.00690 1.22395 0.96545 1.03421 0.96711 1.22515 0.94001 0.83297 1.01452 1.87809 1.78781 1.24520 1.39358 0.93342 0.92191 0.92943 0.91012 0.91841 0.91386 0.90840 0.95097 0.92706 0.92466 0.90046 0.91308 0.93262 0.92321 0.93396 0.92702 0.90428 0.88567 0.90592 0.89303 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.81 37.16 0.36 -1.40 16 2 C -0.11 -1.48 5.64 -26.73 -0.15 -1.63 16 3 C 0.08 1.23 2.35 -26.69 -0.06 1.16 16 4 H 0.09 1.62 5.63 -51.93 -0.29 1.33 16 5 C -0.12 -1.99 4.57 -26.60 -0.12 -2.11 16 6 C -0.11 -1.95 2.19 -91.59 -0.20 -2.15 16 7 H 0.11 2.08 7.73 -51.93 -0.40 1.68 16 8 C 0.52 10.24 5.12 -10.98 -0.06 10.19 16 9 O -0.57 -11.45 10.00 5.55 0.06 -11.39 16 10 N -0.59 -11.89 2.41 -167.47 -0.40 -12.29 16 11 C 0.22 5.13 4.51 -5.19 -0.02 5.10 16 12 C -0.54 -13.69 9.37 -34.44 -0.32 -14.01 16 13 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 14 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -24.05 13.29 55.43 0.74 -23.31 16 16 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 C 0.15 2.73 3.27 -67.93 -0.22 2.51 16 21 C -0.16 -2.85 9.07 37.16 0.34 -2.51 16 22 C -0.17 -2.72 9.09 37.16 0.34 -2.38 16 23 C -0.15 -2.52 5.21 -26.59 -0.14 -2.66 16 24 C 0.06 1.00 6.62 37.20 0.25 1.24 16 25 O -0.39 -6.25 9.94 -35.23 -0.35 -6.60 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.76 7.82 -51.93 -0.41 0.35 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 33 H 0.03 0.75 8.02 -51.93 -0.42 0.34 16 34 H 0.06 1.26 4.00 -51.93 -0.21 1.05 16 35 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 36 H 0.08 1.51 7.86 -51.93 -0.41 1.10 16 37 H 0.07 1.28 6.55 -51.93 -0.34 0.94 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.38 5.95 -51.93 -0.31 1.07 16 43 H 0.10 1.71 5.34 -51.93 -0.28 1.43 16 44 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 45 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.05 0.77 7.38 -51.93 -0.38 0.39 16 LS Contribution 348.42 15.07 5.25 5.25 Total: -1.00 -26.86 348.42 -7.88 -34.74 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -8.03 Total: 5.28 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -0.11 Total: -7.05 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.33 Total: -35.60 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.29 Total: -17.99 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -26.86 -7.88 -34.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543748592.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.930 kcal (2) G-P(sol) polarization free energy of solvation -26.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds