Wall clock time and date at job start Tue Mar 31 2020 06:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46724 * 2 1 4 4 H 1.08991 * 109.48301 * 55.02331 * 3 2 1 5 5 C 1.53096 * 109.47894 * 175.05627 * 3 2 1 6 6 C 1.53174 * 109.16375 * 177.58950 * 5 3 2 7 7 H 1.09003 * 109.61571 * 62.93057 * 6 5 3 8 8 C 1.50698 * 109.54293 * 183.15316 * 6 5 3 9 9 O 1.21277 * 120.00167 * 8.96678 * 8 6 5 10 10 N 1.34782 * 119.99984 * 188.97194 * 8 6 5 11 11 C 1.46494 * 119.99711 * 3.97608 * 10 8 6 12 12 C 1.50696 * 109.47452 * 83.76248 * 11 10 8 13 13 H 1.08005 * 119.99899 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00344 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00058 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99974 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47446 * 89.99727 * 16 14 12 18 18 H 1.48505 * 109.47214 * 210.00010 * 16 14 12 19 19 H 1.48498 * 109.47297 * 329.99867 * 16 14 12 20 20 C 1.46499 * 119.99934 * 183.98078 * 10 8 6 21 21 C 1.53007 * 109.47038 * 299.45360 * 20 10 8 22 22 C 1.52999 * 109.47441 * 59.45449 * 20 10 8 23 23 C 1.53177 * 109.03519 * 303.01627 * 6 5 3 24 24 C 1.53096 * 109.15944 * 56.98320 * 23 6 5 25 25 O 1.42894 * 109.41442 * 302.38715 * 24 23 6 26 26 H 1.09000 * 109.47309 * 300.00268 * 1 2 3 27 27 H 1.08997 * 109.46834 * 60.00650 * 1 2 3 28 28 H 1.08999 * 109.46898 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46834 * 119.99350 * 2 1 3 30 30 H 1.08992 * 109.47484 * 240.00053 * 2 1 3 31 31 H 1.09001 * 109.52077 * 297.49759 * 5 3 2 32 32 H 1.09001 * 109.52029 * 57.68068 * 5 3 2 33 33 H 1.09004 * 109.46799 * 203.76042 * 11 10 8 34 34 H 1.09000 * 109.47595 * 323.75506 * 11 10 8 35 35 H 0.96993 * 120.00370 * 180.02562 * 15 14 12 36 36 H 1.08999 * 109.46891 * 179.45852 * 20 10 8 37 37 H 1.08998 * 109.47167 * 66.86190 * 21 20 10 38 38 H 1.08995 * 109.46802 * 186.86386 * 21 20 10 39 39 H 1.08998 * 109.46678 * 306.85874 * 21 20 10 40 40 H 1.08997 * 109.47231 * 62.80061 * 22 20 10 41 41 H 1.08997 * 109.47328 * 182.80485 * 22 20 10 42 42 H 1.09003 * 109.46640 * 302.80594 * 22 20 10 43 43 H 1.08998 * 109.52615 * 297.07675 * 23 6 5 44 44 H 1.08999 * 109.51896 * 176.88593 * 23 6 5 45 45 H 1.09007 * 109.47495 * 182.40460 * 24 23 6 46 46 H 1.09000 * 109.48203 * 62.37842 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6057 1.9816 0.8419 5 6 3.5658 1.4447 0.1244 6 6 4.0733 2.8886 0.0631 7 1 3.6812 3.4506 0.9107 8 6 5.5796 2.8958 0.1069 9 8 6.1940 1.8541 0.0159 10 7 6.2442 4.0600 0.2473 11 6 5.5023 5.3076 0.4447 12 6 5.1599 5.4631 1.9040 13 1 5.4642 4.7077 2.6135 14 6 4.4582 6.5695 2.3335 15 7 4.0882 7.4895 1.4698 16 14 4.0333 6.7617 4.1423 17 1 5.1251 7.4947 4.8322 18 1 2.7652 7.5232 4.2747 19 1 3.8717 5.4202 4.7581 20 6 7.7084 4.0776 0.2025 21 6 8.2638 3.2083 1.3325 22 6 8.1841 3.5287 -1.1441 23 6 3.5957 3.5310 -1.2429 24 6 2.0686 3.4483 -1.3144 25 8 1.6621 2.0816 -1.2210 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8543 0.9972 1.0755 32 1 3.9988 0.8712 -0.6952 33 1 6.1156 6.1497 0.1237 34 1 4.5847 5.2817 -0.1430 35 1 3.5949 8.2681 1.7719 36 1 8.0633 5.1011 0.3235 37 1 8.0109 2.1646 1.1459 38 1 9.3474 3.3174 1.3758 39 1 7.8287 3.5236 2.2808 40 1 7.8299 4.1763 -1.9461 41 1 9.2735 3.4952 -1.1585 42 1 7.7877 2.5234 -1.2871 43 1 4.0293 2.9997 -2.0901 44 1 3.9056 4.5757 -1.2695 45 1 1.7260 3.8657 -2.2614 46 1 1.6349 4.0139 -0.4897 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543748594.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:58 Heat of formation + Delta-G solvation = -106.295747 kcal Electronic energy + Delta-G solvation = -24388.274732 eV Core-core repulsion = 21084.112625 eV Total energy + Delta-G solvation = -3304.162107 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.02526 -38.50636 -35.39613 -34.08094 -33.62383 -32.73484 -31.13186 -29.54443 -27.03515 -26.61981 -25.59985 -23.54135 -23.03934 -21.87551 -21.03453 -19.92334 -17.90291 -16.71238 -16.22542 -15.96082 -15.67002 -15.28365 -14.56445 -14.52036 -14.25899 -13.75974 -13.57564 -13.27145 -13.21981 -12.86522 -12.81309 -12.38486 -12.29042 -11.87957 -11.71842 -11.60048 -11.42063 -11.28537 -11.07395 -10.96174 -10.89177 -10.80925 -10.69809 -10.62836 -10.39572 -10.21325 -10.06487 -9.94878 -9.68318 -9.30205 -8.67512 -8.49679 -7.66902 -6.21956 -4.28676 3.19194 3.26889 3.29460 3.45667 3.92081 4.03561 4.30279 4.89923 5.05667 5.12217 5.18015 5.25925 5.30227 5.41873 5.47074 5.57305 5.63930 5.69948 5.74320 5.83090 5.89427 5.97343 5.99623 6.07508 6.08376 6.15153 6.19481 6.22182 6.23991 6.32922 6.34835 6.40935 6.45431 6.49340 6.70270 6.77626 6.82599 6.88933 7.22870 7.52524 7.61359 7.75097 8.04229 8.38478 8.78322 9.08788 9.39191 10.84369 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.011754 B = 0.006993 C = 0.005187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.554584 B = 4002.970613 C = 5396.896647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C 0.090 3.910 4 H 0.058 0.942 5 C -0.125 4.125 6 C -0.107 4.107 7 H 0.110 0.890 8 C 0.528 3.472 9 O -0.571 6.571 10 N -0.592 5.592 11 C 0.227 3.773 12 C -0.535 4.535 13 H 0.060 0.940 14 C 0.066 3.934 15 N -0.891 5.891 16 Si 0.893 3.107 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.147 3.853 21 C -0.163 4.163 22 C -0.165 4.165 23 C -0.149 4.149 24 C 0.066 3.934 25 O -0.383 6.383 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.034 0.966 34 H 0.049 0.951 35 H 0.265 0.735 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.271 -8.076 -4.039 9.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C 0.032 3.968 4 H 0.076 0.924 5 C -0.163 4.163 6 C -0.128 4.128 7 H 0.128 0.872 8 C 0.316 3.684 9 O -0.452 6.452 10 N -0.322 5.322 11 C 0.108 3.892 12 C -0.574 4.574 13 H 0.078 0.922 14 C -0.137 4.137 15 N -0.529 5.529 16 Si 0.721 3.279 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.198 1.198 20 C 0.043 3.957 21 C -0.221 4.221 22 C -0.223 4.223 23 C -0.186 4.186 24 C -0.010 4.010 25 O -0.302 6.302 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.141 -8.490 -4.245 9.731 hybrid contribution 0.006 0.731 1.368 1.551 sum -2.135 -7.759 -2.878 8.547 Atomic orbital electron populations 1.21716 0.95551 1.01075 1.02252 1.21522 0.96316 0.94754 1.02585 1.22154 0.93818 0.93608 0.87193 0.92435 1.21989 0.94857 0.96102 1.03358 1.21296 0.93304 0.97562 1.00629 0.87207 1.20267 0.89520 0.83116 0.75472 1.90513 1.69806 1.32293 1.52595 1.48309 1.05613 1.09092 1.69218 1.19700 0.92350 0.80099 0.97068 1.21507 1.35997 1.06607 0.93291 0.92207 1.24919 0.95466 0.95489 0.97841 1.69906 1.38483 1.10443 1.34093 0.86566 0.77973 0.78367 0.85036 1.20516 1.21031 1.19783 1.20835 0.80759 0.99539 0.94571 1.22157 0.99263 1.01978 0.98657 1.22181 1.00299 1.02883 0.96974 1.22302 0.96734 1.02924 0.96652 1.22530 0.93726 0.82710 1.02080 1.87843 1.78678 1.25025 1.38655 0.92988 0.91997 0.93133 0.90798 0.91260 0.91011 0.90682 0.94817 0.93364 0.92519 0.90151 0.90890 0.93241 0.92515 0.93270 0.92696 0.90816 0.91614 0.88753 0.89032 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.81 37.16 0.36 -1.28 16 2 C -0.11 -1.40 5.64 -26.73 -0.15 -1.55 16 3 C 0.09 1.32 2.64 -26.68 -0.07 1.25 16 4 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 5 C -0.12 -2.06 4.10 -26.59 -0.11 -2.17 16 6 C -0.11 -1.97 1.80 -91.59 -0.16 -2.13 16 7 H 0.11 2.23 7.10 -51.93 -0.37 1.86 16 8 C 0.53 10.80 6.30 -10.98 -0.07 10.73 16 9 O -0.57 -12.35 12.22 5.56 0.07 -12.28 16 10 N -0.59 -12.22 2.42 -167.47 -0.41 -12.63 16 11 C 0.23 5.22 4.80 -5.20 -0.02 5.19 16 12 C -0.54 -13.55 8.60 -34.44 -0.30 -13.85 16 13 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 14 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -23.83 13.29 55.43 0.74 -23.09 16 16 Si 0.89 20.26 29.54 -169.99 -5.02 15.23 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 C 0.15 2.73 3.28 -67.93 -0.22 2.50 16 21 C -0.16 -2.91 9.01 37.16 0.33 -2.57 16 22 C -0.17 -2.73 9.15 37.16 0.34 -2.39 16 23 C -0.15 -2.49 5.13 -26.59 -0.14 -2.63 16 24 C 0.07 1.00 6.84 37.21 0.25 1.26 16 25 O -0.38 -5.96 9.94 -35.23 -0.35 -6.31 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.73 7.82 -51.93 -0.41 0.32 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.07 1.29 7.91 -51.93 -0.41 0.88 16 33 H 0.03 0.82 7.79 -51.93 -0.40 0.42 16 34 H 0.05 1.11 4.25 -51.93 -0.22 0.89 16 35 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 36 H 0.08 1.48 7.71 -51.93 -0.40 1.08 16 37 H 0.07 1.40 6.30 -51.93 -0.33 1.07 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 1.34 6.19 -51.93 -0.32 1.02 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.09 1.69 5.35 -51.93 -0.28 1.41 16 45 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 353.68 15.07 5.33 5.33 Total: -1.00 -27.27 353.68 -7.87 -35.14 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -8.18 Total: 4.63 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -0.05 Total: -6.02 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.33 Total: -35.72 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.28 Total: -18.59 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.27 -7.87 -35.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543748594.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.153 kcal (2) G-P(sol) polarization free energy of solvation -27.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds