Wall clock time and date at job start Tue Mar 31 2020 06:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46645 * 2 1 4 4 C 1.53007 * 109.46645 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.46911 * 180.02562 * 4 3 2 6 6 C 1.42900 * 114.00024 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.47099 * 329.99169 * 6 5 4 8 8 C 1.52996 * 109.47498 * 89.99579 * 6 5 4 9 9 C 1.50702 * 109.46866 * 209.99880 * 6 5 4 10 10 O 1.21286 * 120.00223 * 344.39954 * 9 6 5 11 11 N 1.34775 * 120.00060 * 164.40338 * 9 6 5 12 12 C 1.46930 * 120.62888 * 4.11852 * 11 9 6 13 13 C 1.53623 * 108.54426 * 126.37246 * 12 11 9 14 14 C 1.53040 * 109.24491 * 54.85244 * 13 12 11 15 15 C 1.50697 * 109.44747 * 178.50074 * 14 13 12 16 16 H 1.07999 * 120.00121 * 120.06434 * 15 14 13 17 17 C 1.37881 * 119.99927 * 300.05945 * 15 14 13 18 18 N 1.31509 * 119.99959 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99816 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47334 * 90.00179 * 19 17 15 21 21 H 1.48502 * 109.47042 * 209.99875 * 19 17 15 22 22 H 1.48501 * 109.47454 * 329.99747 * 19 17 15 23 23 C 1.53040 * 109.53673 * 298.51287 * 14 13 12 24 24 C 1.46928 * 120.63463 * 184.39545 * 11 9 6 25 25 H 1.09004 * 109.46677 * 60.00180 * 1 2 3 26 26 H 1.08999 * 109.46830 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47169 * 300.00112 * 1 2 3 28 28 H 1.08994 * 109.47380 * 240.00366 * 2 1 3 29 29 H 1.08994 * 109.47169 * 119.99695 * 2 1 3 30 30 H 1.08997 * 109.47429 * 60.00047 * 3 2 1 31 31 H 1.09004 * 109.47436 * 299.99355 * 3 2 1 32 32 H 1.09000 * 109.46903 * 299.99369 * 4 3 2 33 33 H 1.08997 * 109.47169 * 59.99888 * 4 3 2 34 34 H 1.09004 * 109.47047 * 181.44643 * 8 6 5 35 35 H 1.08998 * 109.46848 * 301.44800 * 8 6 5 36 36 H 1.08998 * 109.47378 * 61.44338 * 8 6 5 37 37 H 1.09004 * 109.58252 * 246.20268 * 12 11 9 38 38 H 1.08994 * 109.58576 * 6.62469 * 12 11 9 39 39 H 1.09002 * 109.62986 * 294.85981 * 13 12 11 40 40 H 1.08999 * 109.42787 * 174.72573 * 13 12 11 41 41 H 1.08992 * 109.45792 * 58.53451 * 14 13 12 42 42 H 0.97001 * 119.99868 * 179.97438 * 18 17 15 43 43 H 1.08995 * 109.49802 * 301.41404 * 23 14 13 44 44 H 1.09004 * 109.49606 * 181.31847 * 23 14 13 45 45 H 1.09006 * 109.58243 * 353.37382 * 24 11 9 46 46 H 1.08996 * 109.58652 * 113.65070 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 8 4.0463 2.7899 0.0012 6 6 5.4708 2.9028 0.0013 7 1 5.9033 2.0441 0.5149 8 6 5.9793 2.9436 -1.4411 9 6 5.8743 4.1688 0.7123 10 8 5.0517 5.0348 0.9225 11 7 7.1494 4.3387 1.1144 12 6 8.1766 3.3400 0.7883 13 6 9.3486 4.0526 0.0964 14 6 9.8427 5.1937 0.9885 15 6 11.0163 5.8727 0.3308 16 1 10.9636 6.9226 0.0833 17 6 12.1574 5.1535 0.0449 18 7 12.2214 3.8749 0.3458 19 14 13.6124 5.9953 -0.7698 20 1 14.5168 6.5409 0.2741 21 1 14.3520 5.0114 -1.6005 22 1 13.1251 7.1029 -1.6307 23 6 8.7154 6.2084 1.1929 24 6 7.5375 5.5231 1.8925 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5137 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9564 -0.8901 32 1 3.9329 0.9290 0.8909 33 1 3.9337 0.9286 -0.8891 34 1 7.0677 3.0038 -1.4411 35 1 5.6654 2.0395 -1.9627 36 1 5.5671 3.8166 -1.9471 37 1 8.5252 2.8621 1.7039 38 1 7.7568 2.5894 0.1188 39 1 9.0182 4.4560 -0.8608 40 1 10.1588 3.3422 -0.0678 41 1 10.1497 4.7926 1.9543 42 1 13.0241 3.3689 0.1444 43 1 8.3910 6.5916 0.2254 44 1 9.0751 7.0326 1.8090 45 1 6.6959 6.2133 1.9516 46 1 7.8326 5.2198 2.8970 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543841165.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:15 Heat of formation + Delta-G solvation = -106.890079 kcal Electronic energy + Delta-G solvation = -23070.211895 eV Core-core repulsion = 19766.024017 eV Total energy + Delta-G solvation = -3304.187879 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.00346 -38.05922 -36.64190 -35.19528 -33.60669 -32.12286 -30.75915 -29.91942 -28.95246 -26.40431 -24.49399 -23.43162 -22.63531 -22.09247 -21.37593 -19.96396 -18.30340 -17.28083 -16.58178 -16.24951 -16.10094 -15.36038 -15.01887 -14.56771 -14.39206 -14.29045 -13.65225 -13.56579 -13.15717 -12.98095 -12.84866 -12.69003 -12.35604 -12.17032 -12.01882 -11.87398 -11.58981 -11.43388 -11.32569 -11.27407 -10.97484 -10.96681 -10.87481 -10.65073 -10.41417 -10.14032 -9.83183 -9.66111 -9.20761 -9.17271 -8.92997 -8.40928 -8.01737 -6.06436 -4.12274 2.93424 3.04762 3.26251 3.33414 3.37154 3.89876 4.38487 4.66245 4.67777 4.80723 4.84875 4.94257 5.02520 5.15514 5.22447 5.23081 5.36847 5.49715 5.51972 5.56911 5.60359 5.67716 5.71943 5.81117 5.85645 5.93235 6.00092 6.02076 6.07518 6.13986 6.17310 6.25698 6.43015 6.63664 6.85786 6.98964 7.08568 7.14796 7.25946 7.63117 7.88482 7.89355 8.00361 8.37122 8.56480 8.91203 9.52983 10.99116 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.034792 B = 0.003150 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.592826 B = 8887.382553 C = 9322.234576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.118 4.118 4 C 0.058 3.942 5 O -0.359 6.359 6 C 0.074 3.926 7 H 0.081 0.919 8 C -0.174 4.174 9 C 0.513 3.487 10 O -0.539 6.539 11 N -0.599 5.599 12 C 0.096 3.904 13 C -0.123 4.123 14 C 0.048 3.952 15 C -0.511 4.511 16 H 0.055 0.945 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.123 4.123 24 C 0.113 3.887 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.040 0.960 40 H 0.105 0.895 41 H 0.028 0.972 42 H 0.260 0.740 43 H 0.052 0.948 44 H 0.060 0.940 45 H 0.078 0.922 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.186 -9.067 -0.824 17.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.156 4.156 4 C -0.019 4.019 5 O -0.278 6.278 6 C 0.013 3.987 7 H 0.099 0.901 8 C -0.232 4.232 9 C 0.300 3.700 10 O -0.416 6.416 11 N -0.333 5.333 12 C -0.026 4.026 13 C -0.161 4.161 14 C 0.030 3.970 15 C -0.549 4.549 16 H 0.073 0.927 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.161 4.161 24 C -0.009 4.009 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.123 0.877 41 H 0.046 0.954 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.097 0.903 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.623 -8.595 -0.723 17.846 hybrid contribution 1.194 0.072 -0.488 1.292 sum -14.429 -8.523 -1.211 16.802 Atomic orbital electron populations 1.21754 0.95454 1.01612 1.02081 1.21446 0.96217 0.96100 1.02188 1.21537 0.93371 0.97084 1.03609 1.22627 0.95272 0.83902 1.00069 1.88023 1.18918 1.25807 1.95005 1.21884 0.82901 0.96886 0.97011 0.90085 1.22327 1.02765 1.03360 0.94754 1.20248 0.82306 0.88233 0.79229 1.90651 1.50742 1.43771 1.56404 1.48185 1.07564 1.23686 1.53879 1.22292 0.89794 0.90461 1.00090 1.22102 0.95286 1.00879 0.97878 1.18635 0.91318 0.91320 0.95759 1.21209 0.98452 0.95926 1.39320 0.92670 1.24957 0.98430 0.94899 0.95695 1.69828 1.28228 1.07000 1.48106 0.86614 0.82698 0.79338 0.79478 1.20712 1.21254 1.19976 1.22006 0.95373 0.99249 0.99503 1.21700 0.98542 0.86780 0.93866 0.92607 0.92681 0.92580 0.91846 0.91843 0.91004 0.91032 0.93378 0.93252 0.89827 0.91531 0.91143 0.91822 0.91247 0.94090 0.87710 0.95429 0.92978 0.92886 0.92094 0.90324 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.12 -0.91 5.93 -26.73 -0.16 -1.07 16 3 C -0.12 -1.14 5.58 -26.73 -0.15 -1.29 16 4 C 0.06 0.64 5.75 37.16 0.21 0.85 16 5 O -0.36 -5.47 9.57 -54.64 -0.52 -6.00 16 6 C 0.07 1.10 2.28 -27.88 -0.06 1.03 16 7 H 0.08 1.02 6.92 -51.93 -0.36 0.66 16 8 C -0.17 -2.30 9.17 37.16 0.34 -1.96 16 9 C 0.51 9.48 7.00 -10.99 -0.08 9.40 16 10 O -0.54 -11.80 15.99 -13.86 -0.22 -12.02 16 11 N -0.60 -10.86 2.97 -172.50 -0.51 -11.37 16 12 C 0.10 1.65 5.72 -3.48 -0.02 1.63 16 13 C -0.12 -2.62 5.17 -26.39 -0.14 -2.76 16 14 C 0.05 1.13 2.06 -91.73 -0.19 0.94 16 15 C -0.51 -13.42 8.56 -34.44 -0.29 -13.72 16 16 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 18 N -0.89 -24.01 11.30 55.43 0.63 -23.38 16 19 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 C -0.12 -2.52 5.30 -26.61 -0.14 -2.66 16 24 C 0.11 2.09 6.44 -3.71 -0.02 2.07 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.48 8.09 -51.93 -0.42 0.07 16 33 H 0.05 0.47 7.84 -51.93 -0.41 0.06 16 34 H 0.08 1.12 6.07 -51.93 -0.32 0.81 16 35 H 0.07 0.71 7.84 -51.93 -0.41 0.31 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.07 1.01 4.34 -51.93 -0.23 0.78 16 39 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.10 2.48 6.03 -51.93 -0.31 2.17 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 43 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.08 1.47 7.00 -51.93 -0.36 1.11 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 359.03 15.07 5.41 5.41 Total: -1.00 -29.80 359.03 -8.94 -38.73 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -8.27 Total: -0.31 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -0.43 Total: -6.67 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.11 Total: -34.76 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.74 Total: -18.02 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.80 -8.94 -38.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543841165.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.158 kcal (2) G-P(sol) polarization free energy of solvation -29.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds