Wall clock time and date at job start Tue Mar 31 2020 07:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46655 * 2 1 4 4 H 1.09000 * 109.47300 * 55.00418 * 3 2 1 5 5 C 1.53002 * 109.47485 * 295.00256 * 3 2 1 6 6 C 1.53002 * 109.46784 * 175.00303 * 3 2 1 7 7 H 1.08999 * 109.47241 * 55.14206 * 6 3 2 8 8 O 1.42909 * 109.47289 * 295.14276 * 6 3 2 9 9 C 1.50696 * 109.47343 * 175.14470 * 6 3 2 10 10 O 1.21283 * 120.00445 * 94.87253 * 9 6 3 11 11 N 1.34779 * 120.00050 * 274.87988 * 9 6 3 12 12 C 1.46933 * 120.62881 * 354.19393 * 11 9 6 13 13 C 1.52764 * 109.00722 * 233.58742 * 12 11 9 14 14 C 1.53046 * 109.37840 * 305.58378 * 13 12 11 15 15 C 1.53008 * 109.44555 * 181.25443 * 14 13 12 16 16 C 1.50698 * 109.46753 * 64.94096 * 15 14 13 17 17 H 1.07997 * 120.00534 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99622 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00091 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 120.00072 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47139 * 90.00508 * 20 18 16 22 22 H 1.48502 * 109.47062 * 210.00571 * 20 18 16 23 23 H 1.48500 * 109.47070 * 330.00448 * 20 18 16 24 24 C 1.53045 * 109.53800 * 61.24515 * 14 13 12 25 25 C 1.46922 * 120.63496 * 174.47163 * 11 9 6 26 26 H 1.08995 * 109.47424 * 59.99909 * 1 2 3 27 27 H 1.08999 * 109.47245 * 299.99571 * 1 2 3 28 28 H 1.09006 * 109.46785 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47424 * 120.00090 * 2 1 3 30 30 H 1.08999 * 109.47245 * 240.00429 * 2 1 3 31 31 H 1.08998 * 109.46689 * 304.95599 * 5 3 2 32 32 H 1.08995 * 109.47039 * 64.95556 * 5 3 2 33 33 H 1.08999 * 109.46980 * 184.95928 * 5 3 2 34 34 H 0.96705 * 113.99454 * 300.00012 * 8 6 3 35 35 H 1.09003 * 109.58218 * 353.41313 * 12 11 9 36 36 H 1.08995 * 109.58973 * 113.84290 * 12 11 9 37 37 H 1.08998 * 109.56353 * 185.54837 * 13 12 11 38 38 H 1.09000 * 109.36182 * 65.49015 * 13 12 11 39 39 H 1.08995 * 109.46148 * 301.21851 * 14 13 12 40 40 H 1.09003 * 109.46737 * 184.93884 * 15 14 13 41 41 H 1.08998 * 109.46621 * 304.93764 * 15 14 13 42 42 H 0.97001 * 120.00356 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.49572 * 178.68355 * 24 14 13 44 44 H 1.08997 * 109.52544 * 58.60023 * 24 14 13 45 45 H 1.09001 * 109.59099 * 246.15874 * 25 11 9 46 46 H 1.08999 * 109.58649 * 6.43872 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6351 2.1267 -1.3073 6 6 3.5648 1.4444 0.1256 7 1 3.9954 0.8333 -0.6675 8 8 3.9387 0.9082 1.3964 9 6 4.0770 2.8566 0.0060 10 8 4.2812 3.5143 1.0044 11 7 4.3080 3.3889 -1.2105 12 6 4.1875 2.5669 -2.4224 13 6 5.4812 2.6750 -3.2276 14 6 5.7906 4.1496 -3.4960 15 6 7.0694 4.2583 -4.3291 16 6 6.8386 3.6444 -5.6859 17 1 5.8763 3.2188 -5.9295 18 6 7.8563 3.6250 -6.6159 19 7 7.6548 3.0897 -7.8001 20 14 9.5209 4.3605 -6.1943 21 1 10.3863 3.3143 -5.5927 22 1 10.1595 4.8807 -7.4300 23 1 9.3403 5.4711 -5.2252 24 6 5.9846 4.8821 -2.1663 25 6 4.6912 4.8004 -1.3496 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.9954 1.5390 -2.1516 32 1 0.5490 2.2040 -1.3557 33 1 2.0726 3.1243 -1.3459 34 1 3.5896 1.4032 2.1503 35 1 4.0184 1.5269 -2.1431 36 1 3.3537 2.9256 -3.0258 37 1 5.3663 2.1489 -4.1753 38 1 6.2983 2.2293 -2.6602 39 1 4.9622 4.6009 -4.0418 40 1 7.3384 5.3081 -4.4463 41 1 7.8780 3.7301 -3.8240 42 1 8.3707 3.0764 -8.4546 43 1 6.2279 5.9270 -2.3588 44 1 6.7970 4.4161 -1.6088 45 1 3.8993 5.3451 -1.8637 46 1 4.8518 5.2344 -0.3627 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565719352.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:05 Heat of formation + Delta-G solvation = -111.552865 kcal Electronic energy + Delta-G solvation = -23765.749308 eV Core-core repulsion = 20461.359235 eV Total energy + Delta-G solvation = -3304.390072 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.74243 -38.09356 -37.04467 -35.24052 -34.08716 -32.29127 -31.26174 -30.07771 -28.68712 -27.07949 -24.94785 -24.04799 -22.93691 -21.53548 -20.68446 -19.85308 -19.01621 -17.52532 -17.00672 -16.72223 -16.02305 -15.61028 -14.79104 -14.43706 -14.31293 -14.09580 -13.92928 -13.80132 -13.34972 -13.28048 -12.95699 -12.91532 -12.34522 -12.33132 -12.25377 -12.13340 -11.87299 -11.66234 -11.40962 -11.20137 -11.04476 -10.92059 -10.86834 -10.69905 -10.53212 -10.33081 -9.90767 -9.76376 -9.53287 -9.39049 -9.09481 -8.56521 -8.48343 -6.07543 -4.05106 2.51805 2.98714 3.28721 3.36743 3.40206 4.11183 4.30267 4.42832 4.48253 4.52331 4.81097 4.95014 5.08816 5.17106 5.25044 5.25854 5.27890 5.30244 5.37017 5.39225 5.46408 5.56511 5.64353 5.69051 5.76578 5.77252 5.85305 5.85916 5.95159 6.07212 6.13968 6.22827 6.24320 6.37872 6.54363 6.74719 6.80996 6.91320 7.23188 7.30417 7.39067 7.46534 7.76603 8.11005 8.49760 8.96491 9.55784 11.05568 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.024469 B = 0.003946 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.017545 B = 7094.093195 C = 7637.783565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.112 4.112 4 H 0.077 0.923 5 C -0.165 4.165 6 C 0.092 3.908 7 H 0.123 0.877 8 O -0.540 6.540 9 C 0.491 3.509 10 O -0.550 6.550 11 N -0.599 5.599 12 C 0.100 3.900 13 C -0.124 4.124 14 C -0.071 4.071 15 C -0.009 4.009 16 C -0.517 4.517 17 H 0.074 0.926 18 C 0.067 3.933 19 N -0.904 5.904 20 Si 0.877 3.123 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.266 1.266 24 C -0.132 4.132 25 C 0.110 3.890 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.382 0.618 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.016 0.984 41 H 0.010 0.990 42 H 0.262 0.738 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.040 -3.269 14.888 20.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.132 4.132 4 H 0.096 0.904 5 C -0.222 4.222 6 C 0.030 3.970 7 H 0.140 0.860 8 O -0.345 6.345 9 C 0.279 3.721 10 O -0.428 6.428 11 N -0.333 5.333 12 C -0.022 4.022 13 C -0.162 4.162 14 C -0.090 4.090 15 C -0.047 4.047 16 C -0.554 4.554 17 H 0.092 0.908 18 C -0.134 4.134 19 N -0.543 5.543 20 Si 0.705 3.295 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.191 1.191 24 C -0.170 4.170 25 C -0.012 4.012 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.230 0.770 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.034 0.966 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.541 -3.395 14.877 19.751 hybrid contribution 0.770 0.800 0.221 1.132 sum -11.771 -2.595 15.097 19.319 Atomic orbital electron populations 1.21812 0.95674 1.01652 1.01887 1.21524 0.95862 0.95024 1.02894 1.21757 0.93449 0.98005 0.99963 0.90447 1.22270 1.02136 1.01303 0.96502 1.22074 0.94875 0.91798 0.88297 0.85964 1.86589 1.77861 1.55401 1.14647 1.21452 0.77649 0.89829 0.83188 1.90661 1.53167 1.62712 1.36275 1.48259 1.67083 1.11754 1.06187 1.22147 0.99942 0.94492 0.85660 1.21893 0.95299 0.98597 1.00434 1.21001 1.00474 0.93821 0.93695 1.19620 0.92760 0.96718 0.95580 1.21121 0.99995 1.38134 0.96189 0.90842 1.25020 0.98668 0.94873 0.94888 1.69906 1.33258 1.45493 1.05621 0.86818 0.84627 0.80174 0.77889 1.20383 1.21475 1.19081 1.22056 0.96432 1.01353 0.97197 1.21666 0.97195 0.80986 1.01337 0.92400 0.92916 0.92685 0.91098 0.91568 0.91444 0.91906 0.91503 0.76955 0.90223 0.90775 0.88960 0.92287 0.91670 0.96596 0.97120 0.92777 0.91118 0.92050 0.91592 0.89664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.67 37.16 0.36 -0.71 16 2 C -0.12 -0.92 5.35 -26.73 -0.14 -1.06 16 3 C -0.11 -1.01 2.18 -90.62 -0.20 -1.20 16 4 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 5 C -0.16 -1.44 6.98 37.16 0.26 -1.18 16 6 C 0.09 1.03 2.55 -27.88 -0.07 0.96 16 7 H 0.12 1.31 6.00 -51.93 -0.31 1.00 16 8 O -0.54 -6.42 12.62 -53.75 -0.68 -7.10 16 9 C 0.49 6.88 6.11 -10.99 -0.07 6.81 16 10 O -0.55 -9.36 15.79 -12.97 -0.20 -9.57 16 11 N -0.60 -8.06 2.09 -173.03 -0.36 -8.42 16 12 C 0.10 1.25 4.03 -3.93 -0.02 1.23 16 13 C -0.12 -2.02 5.17 -26.83 -0.14 -2.16 16 14 C -0.07 -1.28 2.10 -90.57 -0.19 -1.47 16 15 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 16 C -0.52 -13.87 8.94 -34.44 -0.31 -14.18 16 17 H 0.07 2.09 7.30 -52.49 -0.38 1.70 16 18 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 19 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 20 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 24 C -0.13 -2.06 5.36 -26.61 -0.14 -2.20 16 25 C 0.11 1.53 6.44 -3.71 -0.02 1.51 16 26 H 0.06 0.39 6.68 -51.93 -0.35 0.05 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.59 7.69 -51.93 -0.40 0.19 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.55 6.46 -51.93 -0.34 0.22 16 32 H 0.06 0.49 6.81 -51.93 -0.35 0.14 16 33 H 0.07 0.68 5.40 -51.93 -0.28 0.40 16 34 H 0.38 3.73 8.63 45.56 0.39 4.12 16 35 H 0.08 0.84 4.56 -51.93 -0.24 0.60 16 36 H 0.07 0.86 7.13 -51.93 -0.37 0.49 16 37 H 0.09 1.65 6.91 -51.93 -0.36 1.30 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 41 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.08 1.24 7.00 -51.93 -0.36 0.87 16 LS Contribution 343.48 15.07 5.18 5.18 Total: -1.00 -31.41 343.48 -7.92 -39.34 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.08 Total: 2.36 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -0.88 Total: -12.19 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.41 Total: -34.77 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.88 Total: -16.66 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.41 -7.92 -39.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565719352.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.218 kcal (2) G-P(sol) polarization free energy of solvation -31.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds