Wall clock time and date at job start Tue Mar 31 2020 07:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47552 * 2 1 4 4 H 1.09004 * 109.47010 * 304.99618 * 3 2 1 5 5 C 1.53000 * 109.47353 * 64.99519 * 3 2 1 6 6 C 1.53005 * 109.47035 * 185.00242 * 3 2 1 7 7 H 1.08999 * 109.47379 * 54.76318 * 6 3 2 8 8 O 1.42905 * 109.46769 * 294.76052 * 6 3 2 9 9 C 1.50701 * 109.47015 * 174.76729 * 6 3 2 10 10 O 1.21279 * 120.00383 * 109.26927 * 9 6 3 11 11 N 1.34781 * 119.99685 * 289.27201 * 9 6 3 12 12 C 1.46926 * 120.63031 * 4.64556 * 11 9 6 13 13 C 1.53630 * 108.53786 * 126.37567 * 12 11 9 14 14 C 1.53036 * 109.24310 * 54.85479 * 13 12 11 15 15 C 1.53007 * 109.44754 * 178.49481 * 14 13 12 16 16 C 1.50696 * 109.47196 * 295.06617 * 15 14 13 17 17 H 1.08000 * 120.00219 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99863 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00077 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99738 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47510 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.46789 * 120.00165 * 20 18 16 23 23 H 1.48500 * 109.47111 * 239.99580 * 20 18 16 24 24 C 1.53035 * 109.54197 * 298.51137 * 14 13 12 25 25 C 1.46924 * 120.62847 * 184.93433 * 11 9 6 26 26 H 1.08998 * 109.47684 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46898 * 300.00690 * 1 2 3 28 28 H 1.09006 * 109.47062 * 60.00178 * 1 2 3 29 29 H 1.09004 * 109.46898 * 239.99310 * 2 1 3 30 30 H 1.09006 * 109.47080 * 120.00378 * 2 1 3 31 31 H 1.09007 * 109.46288 * 60.00330 * 5 3 2 32 32 H 1.08998 * 109.47135 * 179.97438 * 5 3 2 33 33 H 1.08996 * 109.47286 * 300.00471 * 5 3 2 34 34 H 0.96703 * 113.99937 * 300.00426 * 8 6 3 35 35 H 1.08999 * 109.58886 * 246.20615 * 12 11 9 36 36 H 1.08996 * 109.58364 * 6.63618 * 12 11 9 37 37 H 1.09004 * 109.63274 * 294.86046 * 13 12 11 38 38 H 1.09001 * 109.42941 * 174.72727 * 13 12 11 39 39 H 1.09003 * 109.45629 * 58.53554 * 14 13 12 40 40 H 1.09001 * 109.46902 * 55.06368 * 15 14 13 41 41 H 1.08999 * 109.46896 * 175.06367 * 15 14 13 42 42 H 0.96995 * 120.00075 * 179.97438 * 19 18 16 43 43 H 1.09005 * 109.49687 * 301.41535 * 24 14 13 44 44 H 1.08996 * 109.50195 * 181.31577 * 24 14 13 45 45 H 1.08994 * 109.58972 * 353.36956 * 25 11 9 46 46 H 1.08997 * 109.58816 * 113.65089 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5649 1.4441 -0.1258 7 1 3.8573 0.8763 -1.0090 8 8 4.1394 0.8450 1.0375 9 6 4.0567 2.8627 -0.2550 10 8 4.6623 3.3804 0.6594 11 7 3.8235 3.5563 -1.3869 12 6 3.0050 2.9803 -2.4626 13 6 1.8819 3.9709 -2.8057 14 6 2.4953 5.3317 -3.1431 15 6 1.3833 6.3119 -3.5220 16 6 0.7156 5.8481 -4.7909 17 1 1.0511 4.9448 -5.2786 18 6 -0.3229 6.5775 -5.3298 19 7 -0.7312 7.6778 -4.7362 20 14 -1.1501 6.0029 -6.9031 21 1 -0.5091 4.7471 -7.3692 22 1 -2.5913 5.7568 -6.6431 23 1 -1.0071 7.0485 -7.9478 24 6 3.2541 5.8669 -1.9266 25 6 4.3881 4.9001 -1.5712 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5140 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.0699 1.5875 2.1491 32 1 1.9991 3.1540 1.3074 33 1 0.5490 2.1253 1.3968 34 1 3.9206 1.2992 1.8627 35 1 3.6256 2.8084 -3.3420 36 1 2.5728 2.0373 -2.1278 37 1 1.2122 4.0752 -1.9520 38 1 1.3221 3.6010 -3.6647 39 1 3.1837 5.2219 -3.9811 40 1 0.6475 6.3547 -2.7190 41 1 1.8098 7.3029 -3.6771 42 1 -1.4615 8.1911 -5.1155 43 1 2.5715 5.9535 -1.0812 44 1 3.6711 6.8466 -2.1599 45 1 4.8688 5.2242 -0.6483 46 1 5.1211 4.8811 -2.3777 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565719356.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:17 Heat of formation + Delta-G solvation = -117.727001 kcal Electronic energy + Delta-G solvation = -23946.514760 eV Core-core repulsion = 20641.856957 eV Total energy + Delta-G solvation = -3304.657803 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.65373 -38.10204 -37.02447 -34.88753 -34.00404 -32.24839 -31.07522 -29.93196 -28.33168 -27.27800 -24.94667 -23.81342 -22.91474 -21.76113 -20.35730 -20.02201 -18.81240 -17.60042 -16.70260 -16.31105 -16.18255 -15.36662 -15.07901 -14.59441 -14.33108 -14.03207 -13.87795 -13.69093 -13.43762 -13.00517 -12.84454 -12.63781 -12.30811 -12.24496 -12.06313 -11.85590 -11.71978 -11.63217 -11.24690 -11.04412 -10.97310 -10.87782 -10.75392 -10.73694 -10.57236 -10.41108 -10.14117 -9.75328 -9.38383 -9.28155 -9.00505 -8.42175 -8.38844 -6.04233 -4.06495 2.58313 3.05455 3.26659 3.35035 3.37341 4.13170 4.37963 4.41273 4.52999 4.62369 4.84423 5.00338 5.10675 5.26702 5.30588 5.31451 5.34781 5.41529 5.46739 5.47389 5.52209 5.61668 5.68204 5.78965 5.81444 5.88362 5.90529 5.93745 6.02307 6.16051 6.22172 6.31384 6.33536 6.46556 6.61287 6.90010 6.93128 7.05245 7.32338 7.52257 7.62501 7.76368 7.95283 8.17670 8.37332 9.00277 9.57714 11.07027 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.018359 B = 0.004560 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.810758 B = 6139.266042 C = 7092.332693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.112 4.112 3 C -0.130 4.130 4 H 0.097 0.903 5 C -0.155 4.155 6 C 0.097 3.903 7 H 0.120 0.880 8 O -0.539 6.539 9 C 0.488 3.512 10 O -0.546 6.546 11 N -0.600 5.600 12 C 0.091 3.909 13 C -0.118 4.118 14 C -0.081 4.081 15 C 0.028 3.972 16 C -0.516 4.516 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.888 3.112 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.128 4.128 25 C 0.110 3.890 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.381 0.619 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.015 0.985 41 H 0.016 0.984 42 H 0.260 0.740 43 H 0.060 0.940 44 H 0.070 0.930 45 H 0.084 0.916 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.492 -13.477 8.680 16.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.149 4.149 4 H 0.115 0.885 5 C -0.212 4.212 6 C 0.034 3.966 7 H 0.138 0.862 8 O -0.345 6.345 9 C 0.275 3.725 10 O -0.425 6.425 11 N -0.334 5.334 12 C -0.031 4.031 13 C -0.156 4.156 14 C -0.099 4.099 15 C -0.009 4.009 16 C -0.555 4.555 17 H 0.075 0.925 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.716 3.284 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.166 4.166 25 C -0.012 4.012 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.231 0.769 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.033 0.967 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.103 0.897 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.929 -13.482 8.725 17.118 hybrid contribution -0.840 0.325 -0.691 1.135 sum 5.090 -13.157 8.034 16.234 Atomic orbital electron populations 1.21845 0.95522 1.01623 1.02316 1.21483 0.95962 0.94944 1.02573 1.22056 0.93752 0.98288 1.00756 0.88509 1.21894 1.02408 1.00586 0.96340 1.21922 0.92994 0.90807 0.90837 0.86222 1.86542 1.76081 1.55250 1.16627 1.21502 0.79798 0.89014 0.82168 1.90665 1.42409 1.70556 1.38845 1.48193 1.50737 1.17365 1.17140 1.22283 0.93502 0.97495 0.89790 1.21974 0.96043 0.95361 1.02175 1.21190 0.98290 0.95412 0.95029 1.19125 0.92037 0.93532 0.96250 1.21261 1.16293 1.09160 1.08745 0.92547 1.25021 0.97130 0.95000 0.97268 1.69969 1.28071 1.15674 1.39698 0.86602 0.79377 0.78731 0.83676 1.19747 1.21082 1.21086 1.22013 0.96983 0.98047 0.99600 1.21686 0.96147 0.81513 1.01843 0.92764 0.92475 0.92337 0.91824 0.91345 0.92389 0.92268 0.91363 0.76947 0.91302 0.89835 0.92185 0.89594 0.92308 0.96656 0.96594 0.93076 0.92107 0.91134 0.89741 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.67 37.16 0.36 -0.95 16 2 C -0.11 -0.98 5.25 -26.74 -0.14 -1.12 16 3 C -0.13 -1.30 1.76 -90.62 -0.16 -1.46 16 4 H 0.10 1.04 5.47 -51.93 -0.28 0.75 16 5 C -0.16 -1.59 8.34 37.16 0.31 -1.28 16 6 C 0.10 1.11 2.29 -27.88 -0.06 1.05 16 7 H 0.12 1.22 7.59 -51.93 -0.39 0.83 16 8 O -0.54 -6.50 12.57 -54.91 -0.69 -7.19 16 9 C 0.49 7.03 6.05 -10.98 -0.07 6.96 16 10 O -0.55 -9.57 15.72 -14.12 -0.22 -9.79 16 11 N -0.60 -8.44 2.97 -172.50 -0.51 -8.95 16 12 C 0.09 1.17 5.57 -3.48 -0.02 1.15 16 13 C -0.12 -1.90 5.12 -26.39 -0.14 -2.03 16 14 C -0.08 -1.50 2.10 -90.58 -0.19 -1.69 16 15 C 0.03 0.67 4.45 -27.88 -0.12 0.54 16 16 C -0.52 -13.63 8.39 -34.44 -0.29 -13.92 16 17 H 0.06 1.43 7.06 -52.49 -0.37 1.06 16 18 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 20 Si 0.89 20.85 29.54 -169.99 -5.02 15.82 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C -0.13 -2.11 5.36 -26.61 -0.14 -2.25 16 25 C 0.11 1.62 6.44 -3.71 -0.02 1.60 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.47 6.56 -51.93 -0.34 0.13 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.60 7.96 -51.93 -0.41 0.19 16 31 H 0.06 0.52 6.71 -51.93 -0.35 0.17 16 32 H 0.06 0.73 7.39 -51.93 -0.38 0.34 16 33 H 0.07 0.65 6.56 -51.93 -0.34 0.31 16 34 H 0.38 4.04 6.87 45.56 0.31 4.35 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.87 4.18 -51.93 -0.22 0.66 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 1.48 6.91 -51.93 -0.36 1.12 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.08 1.30 7.00 -51.93 -0.36 0.93 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 349.77 15.07 5.27 5.27 Total: -1.00 -30.73 349.77 -8.51 -39.24 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -7.29 Total: 2.94 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -0.78 Total: -11.93 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.22 Total: -34.37 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.91 Total: -16.98 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.73 -8.51 -39.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565719356.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.489 kcal (2) G-P(sol) polarization free energy of solvation -30.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds