Wall clock time and date at job start Tue Mar 31 2020 05:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.09003 * 109.47098 * 29.99622 * 3 2 1 5 5 C 1.50697 * 109.46850 * 269.99559 * 3 2 1 6 6 O 1.21280 * 120.00276 * 355.00373 * 5 3 2 7 7 N 1.34780 * 119.99752 * 174.99783 * 5 3 2 8 8 C 1.46929 * 120.63389 * 359.72447 * 7 5 3 9 9 C 1.52759 * 109.00804 * 233.58422 * 8 7 5 10 10 C 1.53041 * 109.38257 * 305.58211 * 9 8 7 11 11 C 1.52996 * 109.46018 * 181.26062 * 10 9 8 12 12 C 1.50700 * 109.47077 * 64.93486 * 11 10 9 13 13 H 1.08002 * 119.99754 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00212 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99602 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99887 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47200 * 59.99999 * 16 14 12 18 18 H 1.48502 * 109.46853 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46752 * 299.99810 * 16 14 12 20 20 C 1.53046 * 109.53499 * 61.24351 * 10 9 8 21 21 C 1.46930 * 120.62960 * 179.97438 * 7 5 3 22 22 C 1.53005 * 109.47314 * 149.99762 * 3 2 1 23 23 C 1.53004 * 109.46763 * 300.00067 * 22 3 2 24 24 C 1.52998 * 109.47097 * 59.99533 * 22 3 2 25 25 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 26 26 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 28 28 H 1.09003 * 109.58300 * 353.41596 * 8 7 5 29 29 H 1.08997 * 109.58874 * 113.83939 * 8 7 5 30 30 H 1.09003 * 109.56404 * 185.55366 * 9 8 7 31 31 H 1.08997 * 109.36342 * 65.49407 * 9 8 7 32 32 H 1.08999 * 109.46269 * 301.22242 * 10 9 8 33 33 H 1.09006 * 109.47106 * 184.93185 * 11 10 9 34 34 H 1.08998 * 109.47423 * 304.93467 * 11 10 9 35 35 H 0.97006 * 119.99207 * 179.97438 * 15 14 12 36 36 H 1.09005 * 109.49389 * 178.68223 * 20 10 9 37 37 H 1.08994 * 109.52364 * 58.60269 * 20 10 9 38 38 H 1.08996 * 109.59162 * 246.15848 * 21 7 5 39 39 H 1.08997 * 109.58397 * 6.44420 * 21 7 5 40 40 H 1.08991 * 109.47298 * 179.97438 * 22 3 2 41 41 H 1.08991 * 109.47422 * 59.99821 * 23 22 3 42 42 H 1.09000 * 109.46479 * 180.02562 * 23 22 3 43 43 H 1.09004 * 109.46789 * 299.99423 * 23 22 3 44 44 H 1.08997 * 109.47329 * 180.02562 * 24 22 3 45 45 H 1.09004 * 109.47591 * 300.00428 * 24 22 3 46 46 H 1.09003 * 109.46865 * 59.99895 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2146 1.7642 -1.4208 6 8 1.9792 1.0105 -2.3413 7 7 2.6589 3.0123 -1.6686 8 6 2.9426 3.9391 -0.5643 9 6 2.1723 5.2380 -0.7945 10 6 2.5105 5.7900 -2.1812 11 6 1.7642 7.1074 -2.4013 12 6 2.2685 8.1394 -1.4258 13 1 3.0441 7.8816 -0.7198 14 6 1.7405 9.4131 -1.4353 15 7 0.7965 9.7271 -2.2954 16 14 2.3662 10.6925 -0.2266 17 1 3.8203 10.9053 -0.4396 18 1 1.6418 11.9712 -0.4401 19 1 2.1334 10.2180 1.1611 20 6 2.0884 4.7801 -3.2509 21 6 2.8636 3.4739 -3.0484 22 6 3.3589 1.2633 0.7213 23 6 3.1514 0.7974 2.1638 24 6 4.2927 0.2892 0.0002 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8901 28 1 2.6278 3.4913 0.3784 29 1 4.0110 4.1520 -0.5312 30 1 2.4518 5.9677 -0.0345 31 1 1.1024 5.0394 -0.7329 32 1 3.5841 5.9651 -2.2505 33 1 1.9351 7.4560 -3.4198 34 1 0.6968 6.9508 -2.2451 35 1 0.4248 10.6231 -2.3018 36 1 2.3082 5.1839 -4.2393 37 1 1.0193 4.5858 -3.1668 38 1 3.9255 3.6483 -3.2217 39 1 2.4990 2.7184 -3.7443 40 1 3.8024 2.2589 0.7209 41 1 2.7081 -0.1983 2.1639 42 1 4.1121 0.7678 2.6778 43 1 2.4861 1.4914 2.6776 44 1 5.2534 0.2588 0.5143 45 1 3.8494 -0.7066 0.0002 46 1 4.4405 0.6211 -1.0275 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570930176.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:03 Heat of formation + Delta-G solvation = -104.399873 kcal Electronic energy + Delta-G solvation = -23854.938308 eV Core-core repulsion = 20550.858413 eV Total energy + Delta-G solvation = -3304.079895 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.56990 -38.22208 -36.91709 -35.18915 -33.87594 -32.14300 -30.91621 -28.57522 -27.63800 -27.26665 -26.17528 -24.46027 -22.92033 -21.98163 -20.57793 -19.92585 -18.83102 -17.19001 -16.80882 -16.32452 -16.05629 -15.33306 -14.87608 -14.58334 -14.48634 -14.19932 -13.76945 -13.62884 -13.41961 -13.25636 -12.90272 -12.68579 -12.48769 -12.33367 -12.18702 -11.84852 -11.68582 -11.29622 -11.22596 -11.09157 -10.92449 -10.84780 -10.80644 -10.71596 -10.56003 -10.39510 -10.15079 -9.71353 -9.31874 -9.13565 -9.01122 -8.39535 -8.35905 -6.03111 -4.05503 2.67848 3.01664 3.29213 3.34870 3.35991 3.66641 4.41659 4.42033 4.56338 4.69364 4.92195 5.04317 5.11882 5.25092 5.28874 5.31875 5.38623 5.41433 5.46776 5.51948 5.55496 5.59028 5.66498 5.69563 5.73988 5.78203 5.87876 5.95991 6.03839 6.12334 6.24372 6.33709 6.34755 6.47551 6.62614 6.88446 6.92970 6.95561 7.06634 7.54892 7.63023 7.77548 7.96235 8.28499 8.38294 9.00779 9.58457 11.08086 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.022733 B = 0.003993 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.399971 B = 7010.879452 C = 7445.630269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.078 3.922 4 H 0.085 0.915 5 C 0.494 3.506 6 O -0.537 6.537 7 N -0.603 5.603 8 C 0.098 3.902 9 C -0.120 4.120 10 C -0.080 4.080 11 C 0.028 3.972 12 C -0.518 4.518 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.889 3.111 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.129 4.129 21 C 0.112 3.888 22 C -0.095 4.095 23 C -0.144 4.144 24 C -0.143 4.143 25 H 0.041 0.959 26 H 0.088 0.912 27 H 0.044 0.956 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.016 0.984 34 H 0.015 0.985 35 H 0.261 0.739 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.065 0.935 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.619 -16.741 7.013 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.016 3.984 4 H 0.103 0.897 5 C 0.281 3.719 6 O -0.414 6.414 7 N -0.338 5.338 8 C -0.025 4.025 9 C -0.158 4.158 10 C -0.099 4.099 11 C -0.009 4.009 12 C -0.556 4.556 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.167 4.167 21 C -0.011 4.011 22 C -0.114 4.114 23 C -0.201 4.201 24 C -0.200 4.200 25 H 0.060 0.940 26 H 0.106 0.894 27 H 0.063 0.937 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.034 0.966 34 H 0.033 0.967 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.111 0.889 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.480 -17.187 6.466 18.690 hybrid contribution -0.014 1.253 0.579 1.380 sum 3.467 -15.934 7.045 17.764 Atomic orbital electron populations 1.22850 0.80839 1.02966 1.00105 1.87939 1.19779 1.24979 1.94416 1.22113 0.97031 0.86579 0.92667 0.89732 1.21233 0.77099 0.81535 0.92039 1.90666 1.51012 1.53601 1.46104 1.48209 1.65310 1.12235 1.08017 1.22034 1.00559 0.91153 0.88718 1.21849 0.99570 0.94553 0.99865 1.21188 1.00335 0.96266 0.92109 1.19119 0.95217 0.89581 0.96999 1.21191 1.20743 0.95691 1.17979 0.92649 1.25019 0.95097 0.98531 0.95751 1.69956 1.27066 1.20302 1.36114 0.86707 0.78968 0.80964 0.81645 1.20277 1.21358 1.20284 1.22030 0.99953 0.94345 1.00376 1.21672 0.99972 0.97023 0.82384 1.21420 0.92841 1.01475 0.95655 1.21782 1.01854 1.02128 0.94355 1.21752 0.98409 0.99969 0.99910 0.94006 0.89379 0.93688 0.90310 0.91235 0.89540 0.92363 0.92274 0.96588 0.96681 0.92968 0.91114 0.92171 0.91803 0.89759 0.88855 0.91674 0.92221 0.92662 0.92538 0.91596 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.81 101.05 1.09 1.40 16 2 O -0.35 -4.59 8.54 -55.09 -0.47 -5.06 16 3 C 0.08 0.95 1.43 -27.88 -0.04 0.91 16 4 H 0.08 0.93 7.06 -51.93 -0.37 0.56 16 5 C 0.49 7.52 5.81 -10.99 -0.06 7.45 16 6 O -0.54 -10.01 15.92 -14.30 -0.23 -10.24 16 7 N -0.60 -8.75 2.98 -173.00 -0.52 -9.26 16 8 C 0.10 1.27 4.94 -3.93 -0.02 1.25 16 9 C -0.12 -1.98 5.17 -26.83 -0.14 -2.12 16 10 C -0.08 -1.51 2.10 -90.58 -0.19 -1.70 16 11 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 12 C -0.52 -13.75 8.39 -34.44 -0.29 -14.04 16 13 H 0.06 1.40 7.06 -52.49 -0.37 1.03 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 16 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 C -0.13 -2.15 5.36 -26.59 -0.14 -2.29 16 21 C 0.11 1.68 6.44 -3.69 -0.02 1.65 16 22 C -0.10 -0.98 2.39 -90.62 -0.22 -1.19 16 23 C -0.14 -1.22 9.05 37.16 0.34 -0.89 16 24 C -0.14 -1.56 8.80 37.16 0.33 -1.24 16 25 H 0.04 0.36 8.09 -51.93 -0.42 -0.06 16 26 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.85 4.68 -51.93 -0.24 0.61 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 1.50 6.91 -51.93 -0.36 1.15 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 1.32 7.00 -51.93 -0.36 0.96 16 40 H 0.09 0.89 5.43 -51.93 -0.28 0.61 16 41 H 0.06 0.59 7.68 -51.93 -0.40 0.19 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.77 7.68 -51.93 -0.40 0.37 16 46 H 0.05 0.68 7.22 -51.93 -0.37 0.31 16 LS Contribution 355.14 15.07 5.35 5.35 Total: -1.00 -31.30 355.14 -7.94 -39.24 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -8.21 Total: -1.62 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 0.41 Total: -8.76 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.22 Total: -34.80 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.70 Total: -15.30 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.30 -7.94 -39.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570930176.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.157 kcal (2) G-P(sol) polarization free energy of solvation -31.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds