Wall clock time and date at job start Tue Mar 31 2020 05:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47186 * 2 1 4 4 C 1.52994 * 109.47118 * 305.00001 * 3 2 1 5 5 C 1.53004 * 109.47448 * 184.99958 * 3 2 1 6 6 O 1.42904 * 109.47090 * 64.99776 * 3 2 1 7 7 C 1.42900 * 114.00226 * 180.02562 * 6 3 2 8 8 C 1.50694 * 109.47329 * 180.02562 * 7 6 3 9 9 O 1.21279 * 119.99880 * 359.97438 * 8 7 6 10 10 N 1.34783 * 120.00022 * 180.02562 * 8 7 6 11 11 C 1.46920 * 120.62842 * 179.97438 * 10 8 7 12 12 C 1.53187 * 108.89681 * 233.55650 * 11 10 8 13 13 C 1.53071 * 109.29548 * 305.58486 * 12 11 10 14 14 C 1.50701 * 109.44475 * 181.23482 * 13 12 11 15 15 H 1.08003 * 119.99821 * 245.24446 * 14 13 12 16 16 C 1.37874 * 120.00204 * 65.23906 * 14 13 12 17 17 N 1.31518 * 119.99844 * 9.58930 * 16 14 13 18 18 Si 1.86798 * 120.00365 * 189.58428 * 16 14 13 19 19 H 1.48499 * 109.47164 * 94.99341 * 18 16 14 20 20 H 1.48496 * 109.47175 * 214.99616 * 18 16 14 21 21 H 1.48506 * 109.46750 * 334.99426 * 18 16 14 22 22 C 1.53040 * 109.66197 * 61.14927 * 13 12 11 23 23 C 1.46919 * 120.62910 * 0.02562 * 10 8 7 24 24 H 1.09000 * 109.46739 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47141 * 299.99953 * 1 2 3 26 26 H 1.08998 * 109.46698 * 60.00369 * 1 2 3 27 27 H 1.09005 * 109.47410 * 240.00252 * 2 1 3 28 28 H 1.09000 * 109.47584 * 119.99806 * 2 1 3 29 29 H 1.09007 * 109.47319 * 179.97438 * 4 3 2 30 30 H 1.09005 * 109.47324 * 299.99985 * 4 3 2 31 31 H 1.09001 * 109.47699 * 59.99855 * 4 3 2 32 32 H 1.09006 * 109.46788 * 299.99863 * 5 3 2 33 33 H 1.09001 * 109.47303 * 59.99967 * 5 3 2 34 34 H 1.09000 * 109.46975 * 180.02562 * 5 3 2 35 35 H 1.08998 * 109.47094 * 59.99752 * 7 6 3 36 36 H 1.09009 * 109.47167 * 300.00375 * 7 6 3 37 37 H 1.09000 * 109.59131 * 353.41911 * 11 10 8 38 38 H 1.09003 * 109.58706 * 113.69708 * 11 10 8 39 39 H 1.09006 * 109.49456 * 65.38882 * 12 11 10 40 40 H 1.09000 * 109.50264 * 185.48906 * 12 11 10 41 41 H 1.09004 * 109.34754 * 301.12351 * 13 12 11 42 42 H 0.96997 * 119.99642 * 179.97438 * 17 16 14 43 43 H 1.09002 * 109.49926 * 178.75439 * 22 13 12 44 44 H 1.08999 * 109.52727 * 58.66713 * 22 13 12 45 45 H 1.08994 * 109.58851 * 246.15437 * 23 10 8 46 46 H 1.08999 * 109.58987 * 6.44786 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4299 2.1991 -1.1816 5 6 3.5648 1.4444 -0.1257 6 8 1.6619 2.0814 1.2211 7 6 2.0913 3.4405 1.3231 8 6 1.6412 4.0118 2.6430 9 8 1.0140 3.3230 3.4196 10 7 1.9347 5.2885 2.9599 11 6 1.5023 5.8597 4.2426 12 6 0.7276 7.1535 3.9736 13 6 1.5883 8.0909 3.1229 14 6 0.8412 9.3772 2.8816 15 1 0.5367 9.6452 1.8807 16 6 0.5463 10.2119 3.9386 17 7 1.0745 9.9864 5.1218 18 14 -0.6033 11.6632 3.6903 19 1 -1.9836 11.2726 4.0742 20 1 -0.1567 12.7988 4.5365 21 1 -0.5833 12.0717 2.2627 22 6 1.9035 7.4250 1.7815 23 6 2.6922 6.1357 2.0288 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7929 3.2270 -1.1813 30 1 1.7183 1.7118 -2.1130 31 1 0.3436 2.1978 -1.0921 32 1 3.9994 0.9054 0.7162 33 1 3.8533 0.9571 -1.0571 34 1 3.9281 2.4721 -0.1252 35 1 1.6574 4.0208 0.5088 36 1 3.1787 3.4837 1.2608 37 1 0.8582 5.1491 4.7605 38 1 2.3750 6.0776 4.8583 39 1 -0.1929 6.9216 3.4377 40 1 0.4861 7.6367 4.9203 41 1 2.5184 8.3046 3.6497 42 1 0.8674 10.5739 5.8653 43 1 2.4978 8.1034 1.1693 44 1 0.9735 7.1887 1.2646 45 1 3.6622 6.3787 2.4625 46 1 2.8353 5.6063 1.0868 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571758526.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:46 Heat of formation + Delta-G solvation = -100.810110 kcal Electronic energy + Delta-G solvation = -23457.412439 eV Core-core repulsion = 20153.488207 eV Total energy + Delta-G solvation = -3303.924232 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.99903 -38.87756 -36.75008 -34.29838 -33.53381 -31.19968 -30.55213 -30.43739 -28.00439 -27.60378 -25.93392 -23.68748 -22.96384 -22.21018 -20.17742 -19.75399 -18.38792 -17.18898 -16.36082 -16.24839 -15.88392 -15.56540 -14.81904 -14.56944 -14.41871 -14.04304 -13.64178 -13.51655 -13.34643 -12.96782 -12.79631 -12.55599 -12.36419 -12.31339 -12.09578 -11.93523 -11.78887 -11.72909 -11.35640 -11.28961 -10.92491 -10.91588 -10.68858 -10.53455 -10.46048 -10.18638 -9.64696 -9.63229 -9.42364 -9.06639 -9.00287 -8.36276 -8.04358 -6.06616 -4.08582 2.93948 3.01888 3.28277 3.36161 3.38246 3.94021 4.40868 4.50710 4.60441 4.74456 4.89662 5.04905 5.13293 5.19996 5.25739 5.28221 5.34802 5.39329 5.42139 5.43804 5.55691 5.72113 5.75487 5.80640 5.85884 5.90099 5.96645 6.00226 6.11105 6.19775 6.28037 6.35370 6.40926 6.55742 6.76568 6.91744 7.08862 7.14384 7.28155 7.65719 7.83503 7.89250 7.95486 8.37220 8.56139 8.94884 9.55385 11.02139 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.031158 B = 0.003429 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.443971 B = 8164.049527 C = 8279.539315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C 0.107 3.893 4 C -0.183 4.183 5 C -0.180 4.180 6 O -0.348 6.348 7 C 0.041 3.959 8 C 0.512 3.488 9 O -0.535 6.535 10 N -0.600 5.600 11 C 0.111 3.889 12 C -0.117 4.117 13 C 0.047 3.953 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.064 3.936 17 N -0.887 5.887 18 Si 0.887 3.113 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.124 4.124 23 C 0.105 3.895 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.041 0.959 40 H 0.085 0.915 41 H 0.035 0.965 42 H 0.261 0.739 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.066 0.934 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.761 -15.417 -11.592 19.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.143 4.143 3 C 0.068 3.932 4 C -0.240 4.240 5 C -0.238 4.238 6 O -0.267 6.267 7 C -0.038 4.038 8 C 0.298 3.702 9 O -0.412 6.412 10 N -0.335 5.335 11 C -0.010 4.010 12 C -0.155 4.155 13 C 0.029 3.971 14 C -0.555 4.555 15 H 0.073 0.927 16 C -0.138 4.138 17 N -0.525 5.525 18 Si 0.715 3.285 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.162 4.162 23 C -0.018 4.018 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.104 0.896 41 H 0.053 0.947 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.330 -15.809 -10.844 19.653 hybrid contribution -0.405 1.163 -0.341 1.277 sum 3.925 -14.646 -11.185 18.842 Atomic orbital electron populations 1.21812 0.95182 1.01376 1.02791 1.21471 0.96953 0.93422 1.02425 1.21589 0.93436 0.93547 0.84649 1.22521 1.02530 1.00749 0.98239 1.22452 0.95903 1.02647 1.02770 1.88095 1.77972 1.23069 1.37537 1.22281 0.99769 0.85114 0.96654 1.20124 0.80301 0.81878 0.87869 1.90671 1.40079 1.58995 1.51440 1.48149 1.54987 1.10392 1.19951 1.21844 0.99255 0.96681 0.83268 1.21949 0.97931 0.92685 1.02950 1.18650 0.96147 0.92624 0.89722 1.21142 1.36414 1.04252 0.93709 0.92703 1.24957 0.95860 0.97485 0.95449 1.69952 1.42534 1.38875 1.01181 0.86666 0.81498 0.82270 0.78095 1.20705 1.21318 1.19929 1.22007 0.98820 0.94101 1.01293 1.21885 0.95293 0.92862 0.91737 0.93014 0.91465 0.92602 0.90838 0.91089 0.92163 0.91492 0.91068 0.91586 0.91451 0.92078 0.90308 0.90558 0.90515 0.92085 0.94039 0.89645 0.94704 0.92958 0.91840 0.92900 0.91553 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.32 37.16 0.35 -1.16 16 2 C -0.11 -0.98 5.23 -26.73 -0.14 -1.12 16 3 C 0.11 1.11 0.82 -90.62 -0.07 1.04 16 4 C -0.18 -1.66 7.76 37.15 0.29 -1.37 16 5 C -0.18 -1.55 8.25 37.16 0.31 -1.25 16 6 O -0.35 -5.02 9.05 -55.14 -0.50 -5.52 16 7 C 0.04 0.57 3.96 36.00 0.14 0.71 16 8 C 0.51 9.24 7.77 -10.99 -0.09 9.15 16 9 O -0.53 -11.72 15.91 -14.35 -0.23 -11.95 16 10 N -0.60 -10.74 2.97 -172.81 -0.51 -11.25 16 11 C 0.11 2.21 6.43 -3.72 -0.02 2.19 16 12 C -0.12 -2.65 5.21 -26.60 -0.14 -2.79 16 13 C 0.05 1.10 1.92 -91.71 -0.18 0.92 16 14 C -0.52 -13.64 8.48 -34.44 -0.29 -13.93 16 15 H 0.05 1.44 7.77 -52.48 -0.41 1.03 16 16 C 0.06 1.74 5.19 -17.82 -0.09 1.64 16 17 N -0.89 -24.76 12.15 55.43 0.67 -24.09 16 18 Si 0.89 20.87 29.55 -169.99 -5.02 15.85 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 22 C -0.12 -2.32 5.30 -26.63 -0.14 -2.47 16 23 C 0.10 1.63 6.34 -3.74 -0.02 1.60 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.82 7.82 -51.93 -0.41 0.42 16 26 H 0.05 0.50 6.34 -51.93 -0.33 0.17 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.53 6.54 -51.93 -0.34 0.19 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.69 6.35 -51.93 -0.33 0.36 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.51 6.54 -51.93 -0.34 0.17 16 35 H 0.08 0.96 5.97 -51.93 -0.31 0.65 16 36 H 0.08 0.87 6.22 -51.92 -0.32 0.55 16 37 H 0.08 1.57 7.00 -51.93 -0.36 1.21 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.09 2.15 6.87 -51.93 -0.36 1.79 16 41 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 42 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.07 0.80 5.93 -51.93 -0.31 0.49 16 LS Contribution 352.28 15.07 5.31 5.31 Total: -1.00 -30.63 352.28 -8.41 -39.04 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -8.02 Total: -0.56 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -0.10 Total: -6.83 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.16 Total: -35.34 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.73 Total: -17.46 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.63 -8.41 -39.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571758526.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.770 kcal (2) G-P(sol) polarization free energy of solvation -30.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds