Wall clock time and date at job start Tue Mar 31 2020 05:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47087 * 2 1 4 4 C 1.53001 * 109.46830 * 60.00312 * 3 2 1 5 5 C 1.52996 * 109.47207 * 300.00690 * 3 2 1 6 6 O 1.42904 * 109.47153 * 306.80000 * 5 3 2 7 7 C 1.50691 * 109.47308 * 180.02562 * 3 2 1 8 8 O 1.21285 * 120.00100 * 1.84068 * 7 3 2 9 9 N 1.34779 * 120.00501 * 181.83382 * 7 3 2 10 10 C 1.46930 * 120.62405 * 354.76431 * 9 7 3 11 11 C 1.53191 * 108.77230 * 126.66641 * 10 9 7 12 12 C 1.53040 * 109.31538 * 54.63162 * 11 10 9 13 13 C 1.52997 * 109.44812 * 178.61819 * 12 11 10 14 14 C 1.50697 * 109.47668 * 295.06628 * 13 12 11 15 15 H 1.07998 * 119.99444 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00103 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99614 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00142 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46848 * 90.00065 * 18 16 14 20 20 H 1.48495 * 109.47290 * 210.00260 * 18 16 14 21 21 H 1.48502 * 109.47019 * 330.00646 * 18 16 14 22 22 C 1.53036 * 109.53787 * 298.63570 * 12 11 10 23 23 C 1.46918 * 120.63244 * 175.04227 * 9 7 3 24 24 H 1.09002 * 109.46646 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46681 * 299.98996 * 1 2 3 26 26 H 1.08992 * 109.47679 * 59.99892 * 1 2 3 27 27 H 1.08999 * 109.46951 * 240.00102 * 2 1 3 28 28 H 1.08996 * 109.47418 * 120.00549 * 2 1 3 29 29 H 1.08996 * 109.47064 * 172.23244 * 4 3 2 30 30 H 1.09002 * 109.47099 * 292.23477 * 4 3 2 31 31 H 1.09003 * 109.47458 * 52.23386 * 4 3 2 32 32 H 1.08998 * 109.47152 * 66.79811 * 5 3 2 33 33 H 1.09002 * 109.47223 * 186.80384 * 5 3 2 34 34 H 0.96694 * 114.00549 * 180.02562 * 6 5 3 35 35 H 1.08996 * 109.58363 * 246.45122 * 10 9 7 36 36 H 1.09001 * 109.58705 * 6.88028 * 10 9 7 37 37 H 1.09007 * 109.49825 * 294.68254 * 11 10 9 38 38 H 1.08997 * 109.49492 * 174.58829 * 11 10 9 39 39 H 1.08997 * 109.45726 * 58.65827 * 12 11 10 40 40 H 1.09001 * 109.47071 * 55.06970 * 13 12 11 41 41 H 1.09000 * 109.46901 * 175.06061 * 13 12 11 42 42 H 0.97006 * 119.99801 * 179.97438 * 17 16 14 43 43 H 1.09006 * 109.50005 * 301.41162 * 22 12 11 44 44 H 1.08997 * 109.52397 * 181.32996 * 22 12 11 45 45 H 1.08997 * 109.58892 * 353.12431 * 23 9 7 46 46 H 1.08999 * 109.58454 * 113.40664 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5299 2.1638 -1.2491 6 8 1.8714 1.4044 -2.4105 7 6 3.5469 1.4426 -0.0006 8 8 4.1534 0.3928 -0.0348 9 7 4.2209 2.6092 0.0366 10 6 3.5048 3.8900 -0.0373 11 6 3.9262 4.7598 1.1512 12 6 5.4508 4.8920 1.1662 13 6 5.8729 5.7885 2.3320 14 6 5.3523 7.1845 2.1064 15 1 4.7781 7.4099 1.2199 16 6 5.6099 8.1742 3.0312 17 7 5.1559 9.3927 2.8339 18 14 6.6036 7.7844 4.5641 19 1 8.0455 8.0102 4.2899 20 1 6.1668 8.6676 5.6751 21 1 6.3886 6.3655 4.9458 22 6 6.0829 3.5082 1.3322 23 6 5.6859 2.6242 0.1458 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.0023 3.1434 1.3215 30 1 0.4489 2.2855 1.1826 31 1 1.7756 1.5760 2.1339 32 1 0.4467 2.2704 -1.1903 33 1 1.9892 3.1503 -1.3121 34 1 1.5787 1.8033 -3.2414 35 1 3.7575 4.3966 -0.9687 36 1 2.4304 3.7108 0.0038 37 1 3.5923 4.2949 2.0788 38 1 3.4762 5.7480 1.0564 39 1 5.7862 5.3343 0.2282 40 1 5.4625 5.3934 3.2613 41 1 6.9608 5.8123 2.3966 42 1 5.3368 10.0889 3.4847 43 1 5.7286 3.0550 2.2582 44 1 7.1681 3.6051 1.3666 45 1 6.0507 1.6099 0.3076 46 1 6.1166 3.0253 -0.7717 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573576424.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:23 Heat of formation + Delta-G solvation = -92.142965 kcal Electronic energy + Delta-G solvation = -24141.336777 eV Core-core repulsion = 20837.788381 eV Total energy + Delta-G solvation = -3303.548396 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.84608 -37.92475 -37.09538 -35.11288 -34.10692 -32.24853 -31.28903 -29.66066 -28.57248 -26.51766 -25.38124 -24.25837 -22.97916 -22.00377 -20.42720 -19.50005 -18.46121 -17.60334 -16.80218 -16.52044 -16.28536 -15.25344 -15.00582 -14.90161 -14.34744 -13.96375 -13.78704 -13.41090 -13.31041 -13.20179 -13.03140 -12.66113 -12.43389 -12.35629 -12.23122 -11.81551 -11.78893 -11.58611 -11.37601 -11.19044 -10.89346 -10.77151 -10.69218 -10.59020 -10.37214 -10.14954 -9.85648 -9.74089 -9.52507 -9.28507 -9.08505 -8.56709 -8.36657 -6.07984 -4.05428 2.79500 3.14394 3.28083 3.36191 3.39735 3.93767 4.34764 4.42398 4.70687 4.75569 4.93665 5.11072 5.16059 5.16741 5.25813 5.27356 5.31037 5.39228 5.41559 5.43220 5.51183 5.60867 5.62214 5.67020 5.82421 5.88130 5.91321 6.00314 6.05856 6.14430 6.27340 6.28025 6.36099 6.43174 6.62330 6.77481 6.83088 6.93116 7.22155 7.40720 7.41789 7.60845 7.76556 8.34664 8.49706 8.96217 9.55440 11.05169 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.026636 B = 0.004124 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.971075 B = 6788.295892 C = 7034.785071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 C -0.076 4.076 4 C -0.163 4.163 5 C 0.069 3.931 6 O -0.564 6.564 7 C 0.532 3.468 8 O -0.546 6.546 9 N -0.604 5.604 10 C 0.083 3.917 11 C -0.122 4.122 12 C -0.071 4.071 13 C -0.010 4.010 14 C -0.516 4.516 15 H 0.073 0.927 16 C 0.067 3.933 17 N -0.904 5.904 18 Si 0.877 3.123 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.266 1.266 22 C -0.132 4.132 23 C 0.113 3.887 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.378 0.622 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.015 0.985 41 H 0.011 0.989 42 H 0.262 0.738 43 H 0.060 0.940 44 H 0.070 0.930 45 H 0.084 0.916 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.053 -14.434 -7.152 18.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.131 4.131 3 C -0.079 4.079 4 C -0.219 4.219 5 C -0.008 4.008 6 O -0.369 6.369 7 C 0.319 3.681 8 O -0.423 6.423 9 N -0.337 5.337 10 C -0.039 4.039 11 C -0.160 4.160 12 C -0.090 4.090 13 C -0.047 4.047 14 C -0.554 4.554 15 H 0.091 0.909 16 C -0.134 4.134 17 N -0.543 5.543 18 Si 0.705 3.295 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.170 4.170 23 C -0.009 4.009 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.225 0.775 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.033 0.967 41 H 0.030 0.970 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.102 0.898 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.464 -15.209 -6.632 18.626 hybrid contribution 0.335 0.554 0.484 0.809 sum -8.129 -14.655 -6.148 17.850 Atomic orbital electron populations 1.21871 0.95753 1.01684 1.01648 1.21241 0.95059 0.93372 1.03417 1.20798 0.92492 0.98930 0.95697 1.22293 1.02104 1.01790 0.95762 1.22698 0.99007 0.94201 0.84931 1.86546 1.82818 1.51343 1.16196 1.20294 0.89292 0.83209 0.75259 1.90636 1.70098 1.31266 1.50335 1.48067 1.07423 1.05830 1.72409 1.22504 0.97284 0.83989 1.00094 1.21962 0.97637 1.00071 0.96339 1.20988 0.93832 0.93319 1.00852 1.19621 0.95977 0.95464 0.93622 1.21126 1.34296 0.92004 1.07978 0.90869 1.25018 0.95489 0.94933 0.98001 1.69912 1.46379 1.01713 1.36315 0.86820 0.80730 0.78657 0.83309 1.20376 1.21480 1.19080 1.22062 1.00808 0.96626 0.97497 1.21609 0.79333 1.01270 0.98661 0.92696 0.92592 0.92632 0.90453 0.91678 0.89841 0.91011 0.91275 0.92446 0.91646 0.77534 0.91528 0.88479 0.92146 0.89157 0.91768 0.96673 0.97045 0.92790 0.92111 0.91162 0.89774 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.22 37.16 0.34 -1.02 16 2 C -0.09 -1.10 4.06 -26.73 -0.11 -1.21 16 3 C -0.08 -0.90 0.36 -155.66 -0.06 -0.96 16 4 C -0.16 -1.68 7.51 37.16 0.28 -1.40 16 5 C 0.07 0.68 4.99 37.16 0.19 0.87 16 6 O -0.56 -6.00 12.50 -35.23 -0.44 -6.44 16 7 C 0.53 8.21 6.29 -10.99 -0.07 8.14 16 8 O -0.55 -10.29 15.42 5.55 0.09 -10.21 16 9 N -0.60 -8.84 2.97 -172.78 -0.51 -9.36 16 10 C 0.08 1.09 4.01 -3.71 -0.01 1.08 16 11 C -0.12 -1.97 4.85 -26.61 -0.13 -2.10 16 12 C -0.07 -1.30 2.10 -90.58 -0.19 -1.49 16 13 C -0.01 -0.21 3.52 -27.89 -0.10 -0.31 16 14 C -0.52 -13.82 8.94 -34.44 -0.31 -14.13 16 15 H 0.07 2.08 7.30 -52.49 -0.38 1.69 16 16 C 0.07 1.87 5.47 -17.82 -0.10 1.78 16 17 N -0.90 -27.03 13.96 55.43 0.77 -26.25 16 18 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 22 C -0.13 -2.09 5.36 -26.61 -0.14 -2.24 16 23 C 0.11 1.70 6.42 -3.71 -0.02 1.67 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.45 6.61 -51.93 -0.34 0.10 16 26 H 0.05 0.46 6.59 -51.93 -0.34 0.12 16 27 H 0.08 1.07 7.46 -51.93 -0.39 0.69 16 28 H 0.06 0.82 8.12 -51.93 -0.42 0.40 16 29 H 0.08 0.91 3.92 -51.93 -0.20 0.71 16 30 H 0.07 0.59 6.83 -51.93 -0.35 0.23 16 31 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 32 H 0.06 0.45 6.78 -51.93 -0.35 0.09 16 33 H 0.07 0.62 4.69 -51.93 -0.24 0.38 16 34 H 0.38 2.24 9.12 45.56 0.42 2.66 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.10 1.06 2.72 -51.93 -0.14 0.92 16 37 H 0.06 0.98 7.51 -51.93 -0.39 0.59 16 38 H 0.09 1.60 6.91 -51.93 -0.36 1.24 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 41 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.08 1.31 7.04 -51.93 -0.37 0.95 16 46 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 337.82 15.07 5.09 5.09 Total: -1.00 -32.82 337.82 -6.87 -39.69 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -6.76 Total: 2.16 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -0.43 Total: -11.32 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.26 Total: -35.61 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.35 Total: -16.65 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.82 -6.87 -39.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573576424.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.454 kcal (2) G-P(sol) polarization free energy of solvation -32.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds