Wall clock time and date at job start Tue Mar 31 2020 06:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46792 * 2 1 4 4 H 1.08999 * 109.51293 * 304.89122 * 3 2 1 5 5 C 1.53292 * 109.55244 * 184.76874 * 3 2 1 6 6 N 1.47158 * 108.38531 * 187.74595 * 5 3 2 7 7 C 1.34777 * 120.98004 * 230.55558 * 6 5 3 8 8 O 1.21280 * 120.00373 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.99763 * 179.97438 * 7 6 5 10 10 C 1.53004 * 109.47420 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46965 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46621 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47076 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00315 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99967 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00153 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99818 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46863 * 90.00053 * 17 15 13 19 19 H 1.48500 * 109.46680 * 210.00059 * 17 15 13 20 20 H 1.48498 * 109.46816 * 329.99902 * 17 15 13 21 21 C 1.47149 * 118.03557 * 50.53262 * 6 5 3 22 22 C 1.53293 * 108.38615 * 309.47002 * 21 6 5 23 23 H 1.08998 * 109.51442 * 172.22696 * 22 21 6 24 24 C 1.53003 * 109.51032 * 292.37584 * 22 21 6 25 25 O 1.42956 * 109.51545 * 64.99643 * 3 2 1 26 26 H 1.08994 * 109.47235 * 300.00240 * 1 2 3 27 27 H 1.09002 * 109.46627 * 60.01029 * 1 2 3 28 28 H 1.09003 * 109.46796 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47680 * 239.99640 * 2 1 3 30 30 H 1.09006 * 109.47086 * 119.99117 * 2 1 3 31 31 H 1.09002 * 109.68371 * 307.46909 * 5 3 2 32 32 H 1.09003 * 109.68479 * 67.98689 * 5 3 2 33 33 H 1.09000 * 109.47643 * 300.00208 * 9 7 6 34 34 H 1.09004 * 109.47432 * 60.00276 * 9 7 6 35 35 H 1.09001 * 109.46367 * 300.00282 * 10 9 7 36 36 H 1.08993 * 109.46700 * 60.00186 * 10 9 7 37 37 H 1.08997 * 109.47322 * 299.99964 * 11 10 9 38 38 H 1.08993 * 109.47323 * 60.00490 * 11 10 9 39 39 H 1.08997 * 109.47271 * 300.00029 * 12 11 10 40 40 H 1.09002 * 109.47090 * 60.00215 * 12 11 10 41 41 H 0.96999 * 120.00355 * 180.02562 * 16 15 13 42 42 H 1.08999 * 109.68426 * 189.74058 * 21 6 5 43 43 H 1.09001 * 109.67886 * 69.19080 * 21 6 5 44 44 H 1.08996 * 109.46942 * 179.74774 * 24 22 21 45 45 H 1.09002 * 109.46981 * 299.74522 * 24 22 21 46 46 H 1.08998 * 109.46850 * 59.74274 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6072 1.9817 -0.8427 5 6 3.5682 1.4465 -0.1201 6 7 4.0451 2.8257 0.0696 7 6 4.8928 3.3939 -0.8108 8 8 5.2734 2.7674 -1.7770 9 6 5.3667 4.8080 -0.5952 10 6 6.3123 5.2077 -1.7297 11 6 6.7939 6.6432 -1.5104 12 6 7.7400 7.0425 -2.6446 13 6 8.2139 8.4567 -2.4290 14 1 7.8747 9.0147 -1.5688 15 6 9.0815 9.0378 -3.3294 16 7 9.4950 8.3582 -4.3766 17 14 9.6696 10.7906 -3.0617 18 1 10.9136 10.7769 -2.2508 19 1 9.9419 11.4273 -4.3753 20 1 8.6207 11.5607 -2.3462 21 6 3.5688 3.5662 1.2486 22 6 2.0406 3.4589 1.3021 23 1 1.6785 3.8816 2.2392 24 6 1.4330 4.2259 0.1258 25 8 1.6622 2.0826 1.2212 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8935 -0.5139 -0.8899 30 1 1.8934 -0.5137 0.8901 31 1 3.9983 0.8007 0.6455 32 1 3.8598 1.0893 -1.1078 33 1 4.5093 5.4809 -0.5834 34 1 5.8931 4.8736 0.3571 35 1 7.1698 4.5348 -1.7419 36 1 5.7855 5.1422 -2.6817 37 1 5.9366 7.3162 -1.4979 38 1 7.3208 6.7082 -0.5585 39 1 8.5972 6.3695 -2.6567 40 1 7.2135 6.9774 -3.5968 41 1 10.1057 8.7669 -5.0098 42 1 3.8608 4.6132 1.1672 43 1 3.9990 3.1338 2.1521 44 1 0.3467 4.1455 0.1619 45 1 1.7220 5.2751 0.1882 46 1 1.7978 3.8037 -0.8105 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588360305.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:31 Heat of formation + Delta-G solvation = -111.226042 kcal Electronic energy + Delta-G solvation = -22766.469583 eV Core-core repulsion = 19462.093682 eV Total energy + Delta-G solvation = -3304.375900 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.78817 -38.80922 -35.19806 -35.00308 -34.47533 -32.63471 -31.50328 -30.12671 -28.75483 -26.81868 -25.72520 -24.15280 -22.59559 -22.01901 -20.47204 -20.03303 -18.98391 -17.24518 -17.04956 -16.26401 -16.14887 -15.93281 -15.41733 -14.93502 -14.64113 -14.43937 -14.15137 -13.94099 -13.72121 -13.47096 -12.73711 -12.61547 -12.44379 -12.37278 -12.19709 -12.09494 -11.65682 -11.56893 -11.55026 -11.45055 -11.30705 -10.98800 -10.74276 -10.55078 -10.50538 -10.40787 -10.31151 -9.77728 -9.61718 -9.22661 -8.98421 -8.70135 -8.30541 -5.95203 -3.97786 2.63934 2.72889 3.33724 3.33867 3.39869 3.42963 4.26864 4.34057 4.48640 4.59344 4.61027 4.66798 4.75530 4.84965 4.93484 5.02295 5.13503 5.24659 5.28723 5.33741 5.37669 5.38173 5.40142 5.48568 5.54222 5.61343 5.63342 5.76640 5.83387 5.86824 5.97966 6.12161 6.19655 6.30871 6.53820 6.82961 6.84524 7.00155 7.17910 7.24479 7.74024 7.89938 8.06068 8.15591 8.47800 9.09911 9.65814 11.16131 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.037851 B = 0.002667 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.555658 B =10496.098604 C =10861.149538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.074 3.926 4 H 0.068 0.932 5 C 0.082 3.918 6 N -0.622 5.622 7 C 0.516 3.484 8 O -0.533 6.533 9 C -0.137 4.137 10 C -0.103 4.103 11 C -0.110 4.110 12 C 0.020 3.980 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.077 3.923 22 C 0.074 3.926 23 H 0.114 0.886 24 C -0.186 4.186 25 O -0.370 6.370 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.099 0.901 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.074 -14.685 13.452 27.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C 0.016 3.984 4 H 0.085 0.915 5 C -0.041 4.041 6 N -0.357 5.357 7 C 0.306 3.694 8 O -0.409 6.409 9 C -0.177 4.177 10 C -0.141 4.141 11 C -0.147 4.147 12 C -0.017 4.017 13 C -0.558 4.558 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.046 4.046 22 C 0.016 3.984 23 H 0.132 0.868 24 C -0.243 4.243 25 O -0.289 6.289 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.118 0.882 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.117 0.883 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.833 -15.094 12.896 27.365 hybrid contribution 0.536 1.166 -0.019 1.283 sum -18.297 -13.928 12.878 26.355 Atomic orbital electron populations 1.21695 0.94936 1.01610 1.02317 1.21507 0.96976 0.93726 1.03036 1.22556 0.93251 0.94540 0.88075 0.91452 1.22264 0.94184 0.83552 1.04070 1.48202 1.47630 1.14401 1.25507 1.21133 0.77349 0.89451 0.81457 1.90697 1.56151 1.64719 1.29296 1.21825 1.01413 0.91827 1.02648 1.21466 0.97938 0.98387 0.96337 1.21644 0.99506 0.92776 1.00795 1.19095 0.93841 0.95940 0.92859 1.21278 1.27018 0.98896 1.08644 0.92764 1.25048 0.96450 0.97831 0.95270 1.69973 1.33665 1.37001 1.12824 0.86610 0.79080 0.84968 0.77425 1.20700 1.21251 1.19925 1.22475 0.94939 0.98491 0.88704 1.22582 0.93092 0.82631 1.00097 0.86807 1.22407 1.01691 1.01107 0.99143 1.87996 1.79833 1.23086 1.37970 0.91917 0.92900 0.92648 0.90299 0.90902 0.90999 0.88217 0.89216 0.89128 0.91784 0.91817 0.93500 0.93478 0.96593 0.96596 0.93039 0.88262 0.90497 0.91592 0.91012 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.81 37.16 0.36 -0.63 16 2 C -0.11 -0.82 5.65 -26.73 -0.15 -0.97 16 3 C 0.07 0.66 2.39 -26.58 -0.06 0.59 16 4 H 0.07 0.64 6.25 -51.93 -0.32 0.32 16 5 C 0.08 0.85 5.93 -3.53 -0.02 0.82 16 6 N -0.62 -6.96 2.54 -172.28 -0.44 -7.40 16 7 C 0.52 7.46 7.71 -10.99 -0.08 7.37 16 8 O -0.53 -9.84 15.45 5.56 0.09 -9.75 16 9 C -0.14 -1.86 4.07 -27.88 -0.11 -1.97 16 10 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 11 C -0.11 -2.26 5.15 -26.73 -0.14 -2.39 16 12 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 13 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.61 13.29 55.43 0.74 -26.88 16 17 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.08 0.63 5.92 -3.54 -0.02 0.61 16 22 C 0.07 0.56 3.93 -26.58 -0.10 0.46 16 23 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 24 C -0.19 -1.46 8.81 37.16 0.33 -1.13 16 25 O -0.37 -3.39 9.76 -35.23 -0.34 -3.73 16 26 H 0.06 0.46 7.82 -51.93 -0.41 0.06 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 1.16 7.08 -51.93 -0.37 0.79 16 33 H 0.09 1.04 7.66 -51.93 -0.40 0.64 16 34 H 0.09 1.06 8.02 -51.93 -0.42 0.65 16 35 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 36 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.10 0.70 6.05 -51.93 -0.31 0.39 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.61 6.11 -51.93 -0.32 0.29 16 LS Contribution 362.40 15.07 5.46 5.46 Total: -1.00 -33.70 362.40 -8.62 -42.31 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -8.42 Total: -4.27 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -0.68 Total: -12.65 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.30 Total: -34.27 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.26 Total: -13.49 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.70 -8.62 -42.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588360305.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.914 kcal (2) G-P(sol) polarization free energy of solvation -33.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds