Wall clock time and date at job start Tue Mar 31 2020 06:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46792 * 2 1 4 4 H 1.08999 * 109.51293 * 304.89122 * 3 2 1 5 5 C 1.53292 * 109.55244 * 184.76874 * 3 2 1 6 6 N 1.47158 * 108.38531 * 187.74595 * 5 3 2 7 7 C 1.34777 * 120.98004 * 230.55558 * 6 5 3 8 8 O 1.21280 * 120.00373 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.99763 * 179.97438 * 7 6 5 10 10 C 1.53004 * 109.47420 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46965 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46621 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47076 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00315 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99967 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00153 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99818 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46863 * 90.00053 * 17 15 13 19 19 H 1.48500 * 109.46680 * 210.00059 * 17 15 13 20 20 H 1.48498 * 109.46816 * 329.99902 * 17 15 13 21 21 C 1.47149 * 118.03557 * 50.53262 * 6 5 3 22 22 C 1.53293 * 108.38615 * 309.47002 * 21 6 5 23 23 H 1.08998 * 109.51442 * 172.22696 * 22 21 6 24 24 C 1.53003 * 109.51032 * 292.37584 * 22 21 6 25 25 O 1.42956 * 109.51545 * 64.99643 * 3 2 1 26 26 H 1.08994 * 109.47235 * 300.00240 * 1 2 3 27 27 H 1.09002 * 109.46627 * 60.01029 * 1 2 3 28 28 H 1.09003 * 109.46796 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47680 * 239.99640 * 2 1 3 30 30 H 1.09006 * 109.47086 * 119.99117 * 2 1 3 31 31 H 1.09002 * 109.68371 * 307.46909 * 5 3 2 32 32 H 1.09003 * 109.68479 * 67.98689 * 5 3 2 33 33 H 1.09000 * 109.47643 * 300.00208 * 9 7 6 34 34 H 1.09004 * 109.47432 * 60.00276 * 9 7 6 35 35 H 1.09001 * 109.46367 * 300.00282 * 10 9 7 36 36 H 1.08993 * 109.46700 * 60.00186 * 10 9 7 37 37 H 1.08997 * 109.47322 * 299.99964 * 11 10 9 38 38 H 1.08993 * 109.47323 * 60.00490 * 11 10 9 39 39 H 1.08997 * 109.47271 * 300.00029 * 12 11 10 40 40 H 1.09002 * 109.47090 * 60.00215 * 12 11 10 41 41 H 0.96999 * 120.00355 * 180.02562 * 16 15 13 42 42 H 1.08999 * 109.68426 * 189.74058 * 21 6 5 43 43 H 1.09001 * 109.67886 * 69.19080 * 21 6 5 44 44 H 1.08996 * 109.46942 * 179.74774 * 24 22 21 45 45 H 1.09002 * 109.46981 * 299.74522 * 24 22 21 46 46 H 1.08998 * 109.46850 * 59.74274 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6072 1.9817 -0.8427 5 6 3.5682 1.4465 -0.1201 6 7 4.0451 2.8257 0.0696 7 6 4.8928 3.3939 -0.8108 8 8 5.2734 2.7674 -1.7770 9 6 5.3667 4.8080 -0.5952 10 6 6.3123 5.2077 -1.7297 11 6 6.7939 6.6432 -1.5104 12 6 7.7400 7.0425 -2.6446 13 6 8.2139 8.4567 -2.4290 14 1 7.8747 9.0147 -1.5688 15 6 9.0815 9.0378 -3.3294 16 7 9.4950 8.3582 -4.3766 17 14 9.6696 10.7906 -3.0617 18 1 10.9136 10.7769 -2.2508 19 1 9.9419 11.4273 -4.3753 20 1 8.6207 11.5607 -2.3462 21 6 3.5688 3.5662 1.2486 22 6 2.0406 3.4589 1.3021 23 1 1.6785 3.8816 2.2392 24 6 1.4330 4.2259 0.1258 25 8 1.6622 2.0826 1.2212 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8935 -0.5139 -0.8899 30 1 1.8934 -0.5137 0.8901 31 1 3.9983 0.8007 0.6455 32 1 3.8598 1.0893 -1.1078 33 1 4.5093 5.4809 -0.5834 34 1 5.8931 4.8736 0.3571 35 1 7.1698 4.5348 -1.7419 36 1 5.7855 5.1422 -2.6817 37 1 5.9366 7.3162 -1.4979 38 1 7.3208 6.7082 -0.5585 39 1 8.5972 6.3695 -2.6567 40 1 7.2135 6.9774 -3.5968 41 1 10.1057 8.7669 -5.0098 42 1 3.8608 4.6132 1.1672 43 1 3.9990 3.1338 2.1521 44 1 0.3467 4.1455 0.1619 45 1 1.7220 5.2751 0.1882 46 1 1.7978 3.8037 -0.8105 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588360305.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:30 Heat of formation + Delta-G solvation = -131.485129 kcal Electronic energy + Delta-G solvation = -22767.348083 eV Core-core repulsion = 19462.093682 eV Total energy + Delta-G solvation = -3305.254400 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.65581 -39.78342 -36.68401 -36.03017 -35.24950 -34.60558 -32.17873 -31.66571 -29.74728 -27.81309 -27.12652 -25.23764 -23.79734 -23.05417 -21.77799 -21.24175 -19.88535 -18.45696 -18.20255 -17.74467 -17.19433 -16.89566 -16.48191 -16.37937 -15.75596 -15.59409 -14.97694 -14.81202 -14.55554 -14.50664 -14.48530 -13.75042 -13.63468 -13.45679 -13.19724 -13.06821 -12.91925 -12.81250 -12.77313 -12.33432 -12.21152 -12.16179 -12.13527 -12.04270 -11.89066 -11.53147 -11.39484 -11.32307 -11.13347 -11.04576 -10.73230 -10.55246 -9.57033 -8.18766 -6.30996 1.40417 1.42764 1.53788 1.54609 1.82897 2.41874 2.71034 3.13994 3.47485 3.60906 3.84243 3.92470 3.99132 4.01518 4.06274 4.11396 4.24943 4.33824 4.36615 4.45858 4.58718 4.63969 4.65045 4.69372 4.78273 4.80814 4.81386 4.87338 4.90365 5.03368 5.10122 5.16261 5.20212 5.24995 5.31524 5.35271 5.41116 5.42890 5.56130 5.77406 5.87701 6.18847 6.24663 6.26805 6.87585 7.08931 7.38677 8.93551 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.037851 B = 0.002667 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.555658 B =10496.098604 C =10861.149538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C 0.082 3.918 4 H 0.057 0.943 5 C 0.079 3.921 6 N -0.614 5.614 7 C 0.513 3.487 8 O -0.587 6.587 9 C -0.126 4.126 10 C -0.095 4.095 11 C -0.094 4.094 12 C 0.018 3.982 13 C -0.540 4.540 14 H 0.067 0.933 15 C -0.008 4.008 16 N -0.939 5.939 17 Si 0.970 3.030 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.258 1.258 21 C 0.070 3.930 22 C 0.073 3.927 23 H 0.142 0.858 24 C -0.184 4.184 25 O -0.377 6.377 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.041 0.959 36 H 0.042 0.958 37 H 0.062 0.938 38 H 0.062 0.938 39 H -0.016 1.016 40 H -0.016 1.016 41 H 0.263 0.737 42 H 0.117 0.883 43 H 0.092 0.908 44 H 0.068 0.932 45 H 0.083 0.917 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.331 -13.430 16.195 29.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C 0.023 3.977 4 H 0.075 0.925 5 C -0.043 4.043 6 N -0.348 5.348 7 C 0.303 3.697 8 O -0.467 6.467 9 C -0.166 4.166 10 C -0.133 4.133 11 C -0.132 4.132 12 C -0.019 4.019 13 C -0.578 4.578 14 H 0.085 0.915 15 C -0.205 4.205 16 N -0.579 5.579 17 Si 0.794 3.206 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.182 1.182 21 C -0.051 4.051 22 C 0.015 3.985 23 H 0.159 0.841 24 C -0.242 4.242 25 O -0.296 6.296 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.002 0.998 40 H 0.002 0.998 41 H 0.071 0.929 42 H 0.135 0.865 43 H 0.110 0.890 44 H 0.087 0.913 45 H 0.102 0.898 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -20.132 -13.842 15.697 29.039 hybrid contribution 0.902 0.728 -0.872 1.450 sum -19.230 -13.114 14.825 27.596 Atomic orbital electron populations 1.21663 0.94446 1.02244 1.01862 1.21530 0.97344 0.92707 1.03557 1.22470 0.91892 0.95448 0.87870 0.92492 1.22342 0.95406 0.83267 1.03321 1.48234 1.46226 1.14783 1.25551 1.21268 0.77535 0.89656 0.81236 1.90682 1.58409 1.65920 1.31652 1.21707 1.01526 0.91776 1.01561 1.21248 0.98058 0.96476 0.97544 1.21435 0.98671 0.94362 0.98687 1.19058 0.93775 0.95099 0.93953 1.21751 1.27182 0.99818 1.09083 0.91467 1.26109 0.96574 1.03005 0.94811 1.70133 1.34445 1.39363 1.13969 0.85377 0.78952 0.78743 0.77543 1.19715 1.21008 1.18216 1.22801 0.95430 0.99227 0.87691 1.22786 0.92606 0.81937 1.01174 0.84083 1.22398 1.01911 1.01698 0.98149 1.87997 1.79843 1.23985 1.37769 0.92508 0.93161 0.91498 0.89750 0.90437 0.90030 0.90187 0.86366 0.86333 0.93974 0.93961 0.91925 0.91957 0.99804 0.99767 0.92867 0.86526 0.88999 0.91268 0.89798 0.94185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.81 71.98 0.71 -1.07 16 2 C -0.11 -1.51 5.65 30.60 0.17 -1.34 16 3 C 0.08 1.37 2.39 30.69 0.07 1.45 16 4 H 0.06 1.08 6.25 -2.39 -0.01 1.07 16 5 C 0.08 1.60 5.93 86.35 0.51 2.11 16 6 N -0.61 -12.94 2.54 -817.35 -2.07 -15.01 16 7 C 0.51 14.56 7.71 87.66 0.68 15.24 16 8 O -0.59 -22.50 15.45 -3.03 -0.05 -22.55 16 9 C -0.13 -3.17 4.07 29.85 0.12 -3.04 16 10 C -0.10 -3.46 4.50 30.60 0.14 -3.32 16 11 C -0.09 -3.82 5.15 30.59 0.16 -3.66 16 12 C 0.02 1.01 4.97 29.85 0.15 1.15 16 13 C -0.54 -31.29 9.11 25.60 0.23 -31.06 16 14 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 15 C -0.01 -0.47 5.46 84.66 0.46 0.00 16 16 N -0.94 -59.29 13.29 21.45 0.28 -59.00 16 17 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 21 C 0.07 0.93 5.92 86.35 0.51 1.44 16 22 C 0.07 0.89 3.93 30.69 0.12 1.01 16 23 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 24 C -0.18 -2.49 8.81 71.98 0.63 -1.86 16 25 O -0.38 -6.12 9.76 -148.98 -1.45 -7.57 16 26 H 0.06 0.77 7.82 -2.39 -0.02 0.75 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 1.95 7.08 -2.39 -0.02 1.93 16 33 H 0.12 2.32 7.66 -2.39 -0.02 2.30 16 34 H 0.12 2.36 8.02 -2.38 -0.02 2.34 16 35 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 36 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 37 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 39 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 40 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 41 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 42 H 0.12 1.15 6.05 -2.39 -0.01 1.14 16 43 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.04 0.73 6.11 -2.39 -0.01 0.72 16 Total: -1.00 -75.64 362.40 4.32 -71.31 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 0.92 Total: 9.00 kcal Atomic # 6 Polarization: -27.61 SS G_CDS: 4.67 Total: -22.95 kcal Atomic # 7 Polarization: -72.23 SS G_CDS: -1.79 Total: -74.02 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -1.50 Total: -30.12 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -75.64 4.32 -71.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588360305.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.171 kcal (2) G-P(sol) polarization free energy of solvation -75.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds