Wall clock time and date at job start Tue Mar 31 2020 06:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47270 * 2 1 4 4 H 1.09002 * 109.50721 * 55.10243 * 3 2 1 5 5 C 1.53290 * 109.55474 * 175.22963 * 3 2 1 6 6 N 1.47158 * 108.38592 * 172.25400 * 5 3 2 7 7 C 1.34777 * 120.98214 * 129.48657 * 6 5 3 8 8 O 1.21284 * 119.99980 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99951 * 179.97438 * 7 6 5 10 10 C 1.52999 * 109.47264 * 179.97438 * 9 7 6 11 11 C 1.52992 * 109.47006 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47006 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47483 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99464 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00359 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99820 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99894 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47308 * 89.99486 * 17 15 13 19 19 H 1.48504 * 109.46889 * 209.99329 * 17 15 13 20 20 H 1.48498 * 109.46856 * 329.99017 * 17 15 13 21 21 C 1.47150 * 118.03117 * 309.46485 * 6 5 3 22 22 C 1.53296 * 108.38576 * 50.53704 * 21 6 5 23 23 H 1.09003 * 109.51253 * 67.61928 * 22 21 6 24 24 C 1.52999 * 109.51256 * 187.76961 * 22 21 6 25 25 O 1.42953 * 109.22045 * 307.69415 * 22 21 6 26 26 H 1.09003 * 109.47091 * 59.99169 * 1 2 3 27 27 H 1.08999 * 109.47315 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46558 * 299.99731 * 1 2 3 29 29 H 1.09000 * 109.46678 * 240.00520 * 2 1 3 30 30 H 1.08994 * 109.47223 * 120.00245 * 2 1 3 31 31 H 1.09001 * 109.68287 * 291.97787 * 5 3 2 32 32 H 1.09002 * 109.68578 * 52.49302 * 5 3 2 33 33 H 1.09009 * 109.46822 * 300.00233 * 9 7 6 34 34 H 1.08999 * 109.47504 * 59.99644 * 9 7 6 35 35 H 1.08997 * 109.47034 * 299.99978 * 10 9 7 36 36 H 1.09001 * 109.46522 * 59.99830 * 10 9 7 37 37 H 1.09004 * 109.47566 * 300.00243 * 11 10 9 38 38 H 1.08999 * 109.47485 * 59.99815 * 11 10 9 39 39 H 1.09001 * 109.47270 * 299.99733 * 12 11 10 40 40 H 1.09003 * 109.47180 * 60.00364 * 12 11 10 41 41 H 0.97002 * 119.99786 * 180.02562 * 16 15 13 42 42 H 1.08993 * 109.68655 * 290.80879 * 21 6 5 43 43 H 1.09005 * 109.67857 * 170.26014 * 21 6 5 44 44 H 1.09004 * 109.47125 * 59.99512 * 24 22 21 45 45 H 1.08993 * 109.47498 * 179.97438 * 24 22 21 46 46 H 1.09006 * 109.47395 * 300.00033 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6072 1.9816 0.8427 5 6 3.5682 1.4464 0.1201 6 7 4.0452 2.8255 -0.0696 7 6 4.8935 3.3934 0.8104 8 8 5.2747 2.7667 1.7762 9 6 5.3685 4.8072 0.5941 10 6 6.3146 5.2064 1.7283 11 6 6.7973 6.6415 1.5083 12 6 7.7429 7.0410 2.6428 13 6 8.2189 8.4543 2.4259 14 1 7.8803 9.0120 1.5652 15 6 9.0856 9.0358 3.3268 16 7 9.5013 10.2691 3.1372 17 14 9.6706 8.0715 4.8159 18 1 10.9143 7.3365 4.4723 19 1 9.9422 9.0075 5.9363 20 1 8.6201 7.1040 5.2228 21 6 3.5690 3.5659 -1.2487 22 6 2.0407 3.4588 -1.3021 23 1 1.6079 4.0053 -0.4641 24 6 1.5325 4.0521 -2.6176 25 8 1.6623 2.0826 -1.2212 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 3.8597 1.0897 1.1080 32 1 3.9983 0.8001 -0.6450 33 1 5.8946 4.8720 -0.3584 34 1 4.5115 5.4806 0.5823 35 1 5.7881 5.1417 2.6804 36 1 7.1717 4.5330 1.7404 37 1 7.3239 6.7059 0.5561 38 1 5.9405 7.3151 1.4958 39 1 7.2159 6.9768 3.5948 40 1 8.5999 6.3675 2.6557 41 1 10.1114 10.6780 3.7708 42 1 3.9991 3.1336 -2.1521 43 1 3.8610 4.6129 -1.1672 44 1 1.9644 3.5033 -3.4545 45 1 0.4459 3.9752 -2.6551 46 1 1.8253 5.1002 -2.6807 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588360307.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:35 Heat of formation + Delta-G solvation = -111.126875 kcal Electronic energy + Delta-G solvation = -22567.154600 eV Core-core repulsion = 19262.783000 eV Total energy + Delta-G solvation = -3304.371600 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.67978 -38.81636 -35.29397 -35.15053 -34.66649 -32.59972 -31.83565 -30.43798 -28.77533 -26.72240 -25.98267 -24.00103 -22.10077 -21.84025 -21.23145 -20.05454 -19.15208 -17.25254 -17.21378 -16.57145 -16.20067 -16.08078 -15.52793 -14.98141 -14.59346 -14.25200 -14.19504 -13.93724 -13.62751 -13.35365 -12.84802 -12.66653 -12.61825 -12.49090 -12.33368 -12.27751 -11.92148 -11.75716 -11.66707 -11.39511 -11.32986 -11.12846 -10.91342 -10.73548 -10.55392 -10.39239 -9.94809 -9.81681 -9.65509 -9.43314 -9.12288 -8.77824 -8.49566 -6.00794 -3.98253 2.56296 2.66369 3.21988 3.35214 3.42199 3.48250 4.17573 4.38004 4.49928 4.51518 4.54474 4.63918 4.69367 4.85108 4.92741 4.97249 5.10274 5.17387 5.24234 5.26346 5.29383 5.34066 5.34361 5.42590 5.51343 5.56977 5.58974 5.70810 5.76321 5.78797 5.93942 6.00490 6.08371 6.18204 6.40181 6.66687 6.80112 6.82577 6.97955 7.15841 7.37471 7.50333 7.84445 8.07695 8.57977 9.04058 9.62621 11.12680 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.030479 B = 0.002798 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.449272 B =10006.248968 C =10660.438925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C 0.079 3.921 4 H 0.063 0.937 5 C 0.082 3.918 6 N -0.624 5.624 7 C 0.516 3.484 8 O -0.534 6.534 9 C -0.138 4.138 10 C -0.106 4.106 11 C -0.102 4.102 12 C -0.016 4.016 13 C -0.519 4.519 14 H 0.071 0.929 15 C 0.064 3.936 16 N -0.906 5.906 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.265 1.265 21 C 0.077 3.923 22 C 0.074 3.926 23 H 0.064 0.936 24 C -0.144 4.144 25 O -0.372 6.372 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.015 0.985 40 H 0.011 0.989 41 H 0.262 0.738 42 H 0.078 0.922 43 H 0.099 0.901 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.286 -19.259 -11.634 29.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C 0.021 3.979 4 H 0.081 0.919 5 C -0.041 4.041 6 N -0.360 5.360 7 C 0.306 3.694 8 O -0.410 6.410 9 C -0.177 4.177 10 C -0.144 4.144 11 C -0.140 4.140 12 C -0.053 4.053 13 C -0.557 4.557 14 H 0.089 0.911 15 C -0.136 4.136 16 N -0.545 5.545 17 Si 0.707 3.293 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.189 1.189 21 C -0.046 4.046 22 C 0.015 3.985 23 H 0.082 0.918 24 C -0.201 4.201 25 O -0.292 6.292 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.034 0.966 40 H 0.029 0.971 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.118 0.882 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.039 -19.542 -11.163 29.478 hybrid contribution 0.554 -0.203 0.901 1.077 sum -18.484 -19.744 -10.263 28.928 Atomic orbital electron populations 1.21699 0.94888 1.01655 1.02347 1.21502 0.97020 0.93599 1.03080 1.22529 0.93225 0.94713 0.87440 0.91948 1.22279 0.94215 0.83518 1.04111 1.48256 1.47635 1.14497 1.25576 1.21134 0.77357 0.89452 0.81442 1.90691 1.56246 1.64738 1.29350 1.21809 1.01464 0.91865 1.02606 1.21497 0.98058 0.98319 0.96546 1.21473 0.99410 0.92806 1.00277 1.19578 0.94495 0.96961 0.94254 1.21178 1.27132 0.97038 1.10365 0.91108 1.25044 0.95876 0.94788 0.97924 1.69922 1.34066 1.13366 1.37162 0.86772 0.79576 0.80126 0.82818 1.20317 1.21453 1.18908 1.22523 0.94986 0.98449 0.88646 1.22474 0.93222 0.83348 0.99453 0.91837 1.21737 1.02243 1.00737 0.95403 1.87944 1.79738 1.23404 1.38097 0.91896 0.92601 0.92883 0.90833 0.90254 0.88164 0.90908 0.88920 0.89025 0.91788 0.91761 0.92843 0.92849 0.96622 0.97056 0.92817 0.90417 0.88241 0.91497 0.91404 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.81 37.16 0.36 -0.61 16 2 C -0.11 -0.79 5.65 -26.73 -0.15 -0.94 16 3 C 0.08 0.69 2.78 -26.58 -0.07 0.62 16 4 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 5 C 0.08 0.82 5.93 -3.53 -0.02 0.80 16 6 N -0.62 -6.92 3.02 -172.28 -0.52 -7.44 16 7 C 0.52 7.25 7.71 -10.99 -0.08 7.16 16 8 O -0.53 -9.53 15.45 5.55 0.09 -9.45 16 9 C -0.14 -1.78 4.07 -27.88 -0.11 -1.89 16 10 C -0.11 -1.80 4.50 -26.74 -0.12 -1.92 16 11 C -0.10 -2.01 5.15 -26.74 -0.14 -2.14 16 12 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 13 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 14 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 15 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 16 N -0.91 -28.41 13.96 55.43 0.77 -27.63 16 17 Si 0.88 22.42 27.47 -169.99 -4.67 17.75 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.26 -6.55 6.54 56.52 0.37 -6.18 16 21 C 0.08 0.63 5.83 -3.53 -0.02 0.61 16 22 C 0.07 0.58 3.40 -26.58 -0.09 0.48 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 C -0.14 -0.83 9.57 37.16 0.36 -0.48 16 25 O -0.37 -3.42 9.56 -35.23 -0.34 -3.76 16 26 H 0.06 0.46 7.82 -51.93 -0.41 0.05 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.35 8.14 -51.92 -0.42 -0.08 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.10 1.13 7.08 -51.93 -0.37 0.76 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.04 8.02 -51.92 -0.42 0.62 16 34 H 0.09 1.01 7.66 -51.93 -0.40 0.61 16 35 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 36 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 40 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 41 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.10 0.70 6.05 -51.93 -0.31 0.38 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 363.53 15.07 5.48 5.48 Total: -1.00 -34.05 363.53 -8.42 -42.46 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -8.59 Total: -5.00 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -0.64 Total: -12.41 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.25 Total: -35.08 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.25 Total: -13.21 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.67 Total: 17.75 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.05 -8.42 -42.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588360307.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.663 kcal (2) G-P(sol) polarization free energy of solvation -34.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds