Wall clock time and date at job start Tue Mar 31 2020 06:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47475 * 2 1 4 4 H 1.08999 * 109.50728 * 304.89859 * 3 2 1 5 5 C 1.52873 * 109.58359 * 184.88025 * 3 2 1 6 6 N 1.47150 * 108.60651 * 187.92420 * 5 3 2 7 7 C 1.34777 * 120.97936 * 230.50262 * 6 5 3 8 8 O 1.21283 * 120.00387 * 359.71435 * 7 6 5 9 9 C 1.50706 * 119.99730 * 179.71647 * 7 6 5 10 10 C 1.53008 * 109.46847 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.46808 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46929 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.47348 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99302 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00436 * 179.72505 * 13 12 11 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46683 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47426 * 119.99743 * 17 15 13 20 20 H 1.48501 * 109.46833 * 239.99986 * 17 15 13 21 21 C 1.47151 * 118.03915 * 50.22755 * 6 5 3 22 22 C 1.53302 * 108.38079 * 309.71706 * 21 6 5 23 23 H 1.08999 * 109.51164 * 292.37714 * 22 21 6 24 24 C 1.53001 * 109.51066 * 172.27734 * 22 21 6 25 25 O 1.42957 * 109.22205 * 52.30074 * 22 21 6 26 26 H 1.09002 * 109.47453 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47272 * 299.99942 * 1 2 3 28 28 H 1.09004 * 109.47258 * 60.00115 * 1 2 3 29 29 H 1.09006 * 109.47011 * 239.99649 * 2 1 3 30 30 H 1.09006 * 109.47045 * 120.00381 * 2 1 3 31 31 H 1.08999 * 109.62215 * 68.10241 * 5 3 2 32 32 H 1.08997 * 109.52586 * 307.68984 * 5 3 2 33 33 H 1.08996 * 109.46844 * 60.00085 * 9 7 6 34 34 H 1.08994 * 109.47301 * 299.99833 * 9 7 6 35 35 H 1.09000 * 109.46719 * 60.00152 * 10 9 7 36 36 H 1.08994 * 109.47402 * 300.00221 * 10 9 7 37 37 H 1.09000 * 109.47441 * 60.00491 * 11 10 9 38 38 H 1.09002 * 109.47087 * 299.99937 * 11 10 9 39 39 H 1.09001 * 109.47671 * 60.00109 * 12 11 10 40 40 H 1.08998 * 109.47454 * 300.00107 * 12 11 10 41 41 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 42 42 H 1.08997 * 109.68323 * 69.43645 * 21 6 5 43 43 H 1.08999 * 109.68233 * 189.95968 * 21 6 5 44 44 H 1.09001 * 109.47105 * 59.99828 * 24 22 21 45 45 H 1.09004 * 109.47016 * 180.02562 * 24 22 21 46 46 H 1.08998 * 109.46907 * 299.99986 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6072 1.9816 -0.8427 5 6 3.5639 1.4471 -0.1225 6 7 4.0462 2.8238 0.0708 7 6 4.8946 3.3916 -0.8092 8 8 5.2758 2.7649 -1.7750 9 6 5.3697 4.8054 -0.5929 10 6 6.3169 5.2041 -1.7264 11 6 6.7997 6.6392 -1.5065 12 6 7.7464 7.0381 -2.6403 13 6 8.2215 8.4519 -2.4242 14 1 7.8818 9.0101 -1.5643 15 6 9.0938 9.0308 -3.3212 16 7 9.5117 8.3491 -4.3654 17 14 9.6832 10.7830 -3.0529 18 1 9.0711 11.3268 -1.8140 19 1 11.1622 10.7929 -2.9204 20 1 9.2843 11.6222 -4.2112 21 6 3.5702 3.5644 1.2499 22 6 2.0418 3.4584 1.3027 23 1 1.6097 4.0054 0.4647 24 6 1.5334 4.0529 2.6176 25 8 1.6623 2.0825 1.2213 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8526 1.0925 -1.1120 32 1 3.9927 0.7973 0.6403 33 1 5.8958 4.8702 0.3595 34 1 4.5128 5.4789 -0.5812 35 1 5.7911 5.1392 -2.6790 36 1 7.1738 4.5306 -1.7378 37 1 7.3256 6.7037 -0.5540 38 1 5.9430 7.3130 -1.4950 39 1 7.2202 6.9737 -3.5928 40 1 8.6031 6.3644 -2.6524 41 1 10.1257 8.7563 -4.9964 42 1 3.9996 3.1314 2.1533 43 1 3.8636 4.6110 1.1691 44 1 1.8270 5.1008 2.6801 45 1 0.4467 3.9768 2.6547 46 1 1.9645 3.5043 3.4550 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588360309.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:39 Heat of formation + Delta-G solvation = -114.390810 kcal Electronic energy + Delta-G solvation = -22513.918352 eV Core-core repulsion = 19209.405217 eV Total energy + Delta-G solvation = -3304.513135 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.64128 -38.76585 -35.25810 -35.02228 -34.61620 -32.63572 -31.80934 -30.13661 -28.61310 -26.66330 -25.74006 -23.98751 -22.19419 -21.89797 -21.23064 -20.03247 -19.11049 -17.19122 -17.15935 -16.25947 -16.07323 -16.00019 -15.48044 -14.93896 -14.52880 -14.44400 -14.17518 -13.87976 -13.56410 -13.27942 -12.80003 -12.65060 -12.62168 -12.35175 -12.22517 -12.14839 -11.69302 -11.60119 -11.56403 -11.36157 -11.30195 -11.00141 -10.87551 -10.55237 -10.48414 -10.41539 -10.35272 -9.78344 -9.61827 -9.22761 -8.97286 -8.73257 -8.30829 -5.95316 -3.97818 2.62692 2.71455 3.24737 3.33003 3.40158 3.44025 4.21270 4.42052 4.48933 4.55358 4.58775 4.66898 4.73196 4.88259 4.96154 5.00153 5.13953 5.25693 5.28029 5.32306 5.33847 5.37537 5.40137 5.45749 5.54329 5.60029 5.61797 5.74671 5.80847 5.82989 5.96509 6.12157 6.17742 6.30564 6.53865 6.83009 6.85372 7.00152 7.17588 7.23752 7.74351 7.89961 8.06071 8.14403 8.47835 9.10107 9.65882 11.16066 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.032241 B = 0.002642 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.256156 B =10596.019186 C =11202.418439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C 0.079 3.921 4 H 0.062 0.938 5 C 0.082 3.918 6 N -0.625 5.625 7 C 0.516 3.484 8 O -0.532 6.532 9 C -0.137 4.137 10 C -0.103 4.103 11 C -0.110 4.110 12 C 0.019 3.981 13 C -0.519 4.519 14 H 0.055 0.945 15 C 0.054 3.946 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.078 3.922 22 C 0.073 3.927 23 H 0.063 0.937 24 C -0.143 4.143 25 O -0.373 6.373 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.259 0.741 42 H 0.077 0.923 43 H 0.099 0.901 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.114 -14.683 14.331 28.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C 0.021 3.979 4 H 0.080 0.920 5 C -0.041 4.041 6 N -0.360 5.360 7 C 0.306 3.694 8 O -0.408 6.408 9 C -0.177 4.177 10 C -0.141 4.141 11 C -0.147 4.147 12 C -0.018 4.018 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.046 4.046 22 C 0.015 3.985 23 H 0.081 0.919 24 C -0.201 4.201 25 O -0.292 6.292 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.119 0.881 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.117 0.883 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.864 -15.094 13.785 27.815 hybrid contribution 0.539 1.114 -0.067 1.240 sum -18.325 -13.979 13.719 26.822 Atomic orbital electron populations 1.21697 0.94904 1.01638 1.02334 1.21504 0.97002 0.93591 1.03091 1.22449 0.93321 0.94720 0.87424 0.91971 1.22188 0.94169 0.83649 1.04129 1.48259 1.47616 1.14606 1.25558 1.21161 0.77367 0.89475 0.81424 1.90697 1.56130 1.64676 1.29282 1.21827 1.01423 0.91767 1.02690 1.21469 0.97916 0.98412 0.96344 1.21645 0.99516 0.92770 1.00796 1.19103 0.93852 0.95972 0.92858 1.21315 1.26727 0.98930 1.08775 0.92706 1.25048 0.96443 0.97836 0.95310 1.69986 1.33512 1.36851 1.13119 0.86553 0.78495 0.84990 0.78055 1.19783 1.21051 1.21051 1.22509 0.94933 0.98438 0.88682 1.22472 0.93258 0.83374 0.99417 0.91853 1.21735 1.02219 1.00696 0.95445 1.87941 1.79712 1.23419 1.38125 0.92613 0.91913 0.92883 0.90229 0.90842 0.88134 0.90964 0.89092 0.89187 0.91799 0.91762 0.93461 0.93490 0.96599 0.96567 0.93096 0.90470 0.88286 0.90522 0.91424 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.81 37.16 0.36 -0.64 16 2 C -0.11 -0.82 5.64 -26.73 -0.15 -0.97 16 3 C 0.08 0.72 2.76 -26.80 -0.07 0.64 16 4 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 5 C 0.08 0.86 5.90 -3.75 -0.02 0.83 16 6 N -0.62 -7.24 3.03 -172.53 -0.52 -7.76 16 7 C 0.52 7.59 7.71 -10.98 -0.08 7.50 16 8 O -0.53 -9.92 15.45 5.56 0.09 -9.84 16 9 C -0.14 -1.87 4.07 -27.88 -0.11 -1.99 16 10 C -0.10 -1.87 4.50 -26.73 -0.12 -1.99 16 11 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 12 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 13 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 14 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.63 13.29 55.43 0.74 -26.89 16 17 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 C 0.08 0.67 5.83 -3.53 -0.02 0.65 16 22 C 0.07 0.59 3.40 -26.57 -0.09 0.50 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 24 C -0.14 -0.85 9.57 37.16 0.36 -0.50 16 25 O -0.37 -3.52 9.57 -35.23 -0.34 -3.86 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.47 7.82 -51.93 -0.41 0.06 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 1.18 7.08 -51.93 -0.37 0.81 16 32 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 33 H 0.09 1.08 8.01 -51.93 -0.42 0.66 16 34 H 0.09 1.05 7.66 -51.93 -0.40 0.65 16 35 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 36 H 0.06 1.25 8.10 -51.93 -0.42 0.82 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.10 0.73 6.05 -51.93 -0.31 0.41 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 367.09 15.07 5.53 5.53 Total: -1.00 -33.83 367.09 -8.80 -42.63 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -8.63 Total: -4.93 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -0.64 Total: -11.80 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.21 Total: -34.65 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.25 Total: -13.70 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.83 -8.80 -42.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588360309.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.764 kcal (2) G-P(sol) polarization free energy of solvation -33.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds