Wall clock time and date at job start Tue Mar 31 2020 07:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52998 * 109.47449 * 2 1 4 4 H 1.09004 * 109.70716 * 304.46263 * 3 2 1 5 5 C 1.53709 * 109.83931 * 183.74910 * 3 2 1 6 6 O 1.42961 * 109.15048 * 292.85313 * 5 3 2 7 7 C 1.42963 * 114.16686 * 297.29245 * 6 5 3 8 8 H 1.08997 * 109.51226 * 302.65587 * 7 6 5 9 9 C 1.52994 * 109.51384 * 182.49912 * 7 6 5 10 10 C 1.53300 * 109.22269 * 62.57254 * 7 6 5 11 11 N 1.47151 * 109.68518 * 64.99455 * 3 2 1 12 12 C 1.34769 * 120.98418 * 249.21346 * 11 3 2 13 13 O 1.21283 * 120.00325 * 359.72254 * 12 11 3 14 14 C 1.50700 * 119.99867 * 179.71599 * 12 11 3 15 15 C 1.53004 * 109.47208 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47319 * 179.97438 * 15 14 12 17 17 C 1.53004 * 109.47319 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.47208 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99770 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00083 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00147 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00278 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47228 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.46793 * 300.00001 * 22 20 18 25 25 H 1.48500 * 109.47000 * 60.00094 * 22 20 18 26 26 H 1.09000 * 109.47844 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47622 * 300.00491 * 1 2 3 28 28 H 1.09007 * 109.47207 * 60.00043 * 1 2 3 29 29 H 1.09001 * 109.47622 * 239.99509 * 2 1 3 30 30 H 1.09007 * 109.47207 * 119.99957 * 2 1 3 31 31 H 1.09004 * 109.65773 * 172.88794 * 5 3 2 32 32 H 1.09004 * 109.49099 * 52.71683 * 5 3 2 33 33 H 1.09002 * 109.47147 * 300.25069 * 9 7 6 34 34 H 1.09000 * 109.47358 * 60.25694 * 9 7 6 35 35 H 1.09004 * 109.46902 * 180.25288 * 9 7 6 36 36 H 1.09000 * 109.68368 * 187.97301 * 10 7 6 37 37 H 1.09004 * 109.70906 * 67.44145 * 10 7 6 38 38 H 1.08995 * 109.47322 * 60.00559 * 14 12 11 39 39 H 1.08998 * 109.47585 * 300.00140 * 14 12 11 40 40 H 1.09009 * 109.46730 * 59.99906 * 15 14 12 41 41 H 1.08998 * 109.47285 * 300.00144 * 15 14 12 42 42 H 1.09000 * 109.47364 * 60.00020 * 16 15 14 43 43 H 1.08998 * 109.47610 * 300.00082 * 16 15 14 44 44 H 1.08994 * 109.47074 * 60.00408 * 17 16 15 45 45 H 1.08998 * 109.47285 * 300.00244 * 17 16 15 46 46 H 0.97005 * 119.99661 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6150 1.9826 -0.8461 5 6 3.5741 1.4533 -0.0945 6 8 4.1219 0.9051 1.1068 7 6 3.8155 1.6546 2.2850 8 1 4.1687 2.6790 2.1669 9 6 4.5017 1.0123 3.4922 10 6 2.2978 1.6580 2.5006 11 7 1.6531 2.1050 1.2556 12 6 0.7315 3.0883 1.2659 13 8 0.2113 3.4428 0.2292 14 6 0.3472 3.7473 2.5655 15 6 -0.7100 4.8210 2.2999 16 6 -1.1006 5.4896 3.6194 17 6 -2.1583 6.5629 3.3539 18 6 -2.5425 7.2219 4.6535 19 1 -2.0784 6.9070 5.5765 20 6 -3.4865 8.2267 4.6643 21 7 -4.0520 8.6098 3.5404 22 14 -3.9623 9.0441 6.2752 23 1 -4.9889 10.0857 6.0174 24 1 -4.5131 8.0245 7.2038 25 1 -2.7627 9.6724 6.8847 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.9265 2.4770 -0.2213 32 1 3.8903 0.8514 -0.9466 33 1 4.1492 -0.0127 3.6077 34 1 5.5808 1.0103 3.3382 35 1 4.2640 1.5817 4.3907 36 1 2.0436 2.3409 3.3113 37 1 1.9594 0.6519 2.7485 38 1 1.2278 4.2072 3.0140 39 1 -0.0585 2.9991 3.2464 40 1 -1.5906 4.3607 1.8516 41 1 -0.3047 5.5694 1.6190 42 1 -0.2202 5.9497 4.0682 43 1 -1.5061 4.7411 4.3001 44 1 -3.0385 6.1024 2.9055 45 1 -1.7532 7.3116 2.6731 46 1 -3.8046 8.1856 2.7038 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588640358.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:02 Heat of formation + Delta-G solvation = -115.986710 kcal Electronic energy + Delta-G solvation = -23025.154193 eV Core-core repulsion = 19720.571854 eV Total energy + Delta-G solvation = -3304.582338 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.82961 -38.68294 -35.66386 -35.04786 -34.25614 -32.77209 -31.94376 -29.74260 -28.54102 -26.69546 -25.37605 -23.96979 -22.71330 -22.20224 -20.77335 -20.20669 -18.96542 -17.38303 -17.03791 -16.62125 -16.15046 -16.01859 -15.44621 -15.04224 -14.62385 -14.21178 -14.06047 -13.69219 -13.64075 -13.21841 -12.89716 -12.72932 -12.57195 -12.44055 -12.30012 -12.21796 -11.96668 -11.79150 -11.31938 -11.26937 -11.08566 -10.95805 -10.78742 -10.66038 -10.58646 -10.38088 -10.09426 -9.84435 -9.75593 -9.52077 -8.73341 -8.46668 -8.27434 -6.30779 -3.99493 2.60449 2.67044 3.32401 3.45704 3.48218 3.67035 4.23152 4.35223 4.45866 4.58729 4.61479 4.70243 4.78194 4.89929 4.99257 5.09672 5.15446 5.19456 5.19746 5.25933 5.28739 5.34039 5.46585 5.47285 5.51567 5.62968 5.72754 5.73600 5.77746 5.87080 6.01564 6.10522 6.15750 6.27626 6.42621 6.69762 6.76994 6.86062 7.03214 7.20982 7.49332 7.62267 8.12402 8.28206 8.52101 8.94351 9.73362 11.09973 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.025844 B = 0.003001 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.149942 B = 9328.524349 C = 9963.299532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C 0.104 3.896 4 H 0.107 0.893 5 C 0.055 3.945 6 O -0.375 6.375 7 C 0.073 3.927 8 H 0.064 0.936 9 C -0.144 4.144 10 C 0.077 3.923 11 N -0.617 5.617 12 C 0.518 3.482 13 O -0.532 6.532 14 C -0.138 4.138 15 C -0.104 4.104 16 C -0.103 4.103 17 C 0.007 3.993 18 C -0.602 4.602 19 H 0.047 0.953 20 C 0.012 3.988 21 N -0.914 5.914 22 Si 1.069 2.931 23 H -0.283 1.283 24 H -0.288 1.288 25 H -0.288 1.288 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.007 0.993 45 H 0.007 0.993 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.229 -19.655 -4.019 27.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C 0.001 3.999 4 H 0.125 0.875 5 C -0.023 4.023 6 O -0.294 6.294 7 C 0.014 3.986 8 H 0.082 0.918 9 C -0.202 4.202 10 C -0.046 4.046 11 N -0.352 5.352 12 C 0.307 3.693 13 O -0.407 6.407 14 C -0.177 4.177 15 C -0.142 4.142 16 C -0.140 4.140 17 C -0.030 4.030 18 C -0.641 4.641 19 H 0.066 0.934 20 C -0.191 4.191 21 N -0.551 5.551 22 Si 0.897 3.103 23 H -0.208 1.208 24 H -0.215 1.215 25 H -0.215 1.215 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.123 0.877 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.025 0.975 45 H 0.025 0.975 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 17.057 -18.439 -3.915 25.422 hybrid contribution 0.890 -1.038 -0.631 1.506 sum 17.947 -19.477 -4.546 26.872 Atomic orbital electron populations 1.21702 0.95211 1.01241 1.02395 1.21742 0.96540 0.95345 1.02695 1.22013 0.95047 0.94302 0.88567 0.87503 1.23064 0.91829 0.99487 0.87878 1.87948 1.74735 1.51979 1.14716 1.22491 0.93532 0.95896 0.86668 0.91807 1.21739 1.01264 1.01710 0.95457 1.22482 0.93033 1.01777 0.87318 1.48288 1.41981 1.37231 1.07738 1.21065 0.77738 0.78444 0.92041 1.90694 1.52709 1.62701 1.34622 1.21810 1.01594 0.99866 0.94476 1.21471 0.97032 0.96260 0.99410 1.21515 0.99627 0.98447 0.94461 1.19219 0.93274 0.93188 0.97327 1.22081 1.26169 1.22104 0.93717 0.93425 1.25865 0.93878 0.95517 1.03867 1.70769 1.42471 1.42676 0.99154 0.83549 0.76313 0.76232 0.74166 1.20787 1.21486 1.21496 0.92817 0.92905 0.92502 0.90970 0.91286 0.92600 0.87729 0.91519 0.91400 0.90549 0.88424 0.90485 0.89204 0.89143 0.91844 0.91862 0.93321 0.93308 0.97507 0.97519 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.80 37.15 0.36 -1.14 16 2 C -0.12 -1.10 5.36 -26.74 -0.14 -1.25 16 3 C 0.10 1.04 2.63 -67.21 -0.18 0.87 16 4 H 0.11 1.25 7.08 -51.93 -0.37 0.88 16 5 C 0.05 0.46 6.38 37.53 0.24 0.70 16 6 O -0.38 -3.45 10.10 -35.23 -0.36 -3.80 16 7 C 0.07 0.57 3.40 -26.58 -0.09 0.48 16 8 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 9 C -0.14 -0.85 9.57 37.15 0.36 -0.49 16 10 C 0.08 0.64 5.42 -3.53 -0.02 0.62 16 11 N -0.62 -6.77 2.21 -164.50 -0.36 -7.14 16 12 C 0.52 7.36 7.42 -10.99 -0.08 7.28 16 13 O -0.53 -9.59 15.45 5.55 0.09 -9.50 16 14 C -0.14 -1.86 4.07 -27.88 -0.11 -1.98 16 15 C -0.10 -1.87 4.50 -26.73 -0.12 -1.99 16 16 C -0.10 -2.15 5.15 -26.73 -0.14 -2.29 16 17 C 0.01 0.18 4.28 -27.88 -0.12 0.06 16 18 C -0.60 -17.70 9.11 -34.44 -0.31 -18.01 16 19 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 20 C 0.01 0.36 5.46 -17.82 -0.10 0.27 16 21 N -0.91 -28.98 13.65 55.43 0.76 -28.22 16 22 Si 1.07 25.80 29.90 -169.99 -5.08 20.71 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.62 7.49 -51.93 -0.39 0.23 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.61 7.12 -51.93 -0.37 0.25 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.10 0.71 6.05 -51.93 -0.31 0.40 16 37 H 0.08 0.60 7.52 -51.93 -0.39 0.21 16 38 H 0.09 1.05 7.66 -51.93 -0.40 0.65 16 39 H 0.09 1.07 8.02 -51.93 -0.42 0.66 16 40 H 0.06 1.22 8.10 -51.92 -0.42 0.80 16 41 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 45 H 0.01 0.18 8.01 -51.93 -0.42 -0.23 16 46 H 0.27 8.54 7.22 -40.82 -0.29 8.25 16 LS Contribution 362.87 15.07 5.47 5.47 Total: -1.00 -34.37 362.87 -8.41 -42.78 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -8.47 Total: -3.43 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -0.45 Total: -16.86 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.39 Total: -35.36 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.27 Total: -13.30 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.08 Total: 20.71 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.37 -8.41 -42.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588640358.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.209 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds