Wall clock time and date at job start Tue Mar 31 2020 07:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47069 * 2 1 4 4 H 1.08997 * 109.67710 * 60.12976 * 3 2 1 5 5 C 1.53299 * 109.67854 * 299.61333 * 3 2 1 6 6 O 1.42969 * 109.21744 * 187.97422 * 5 3 2 7 7 C 1.42964 * 114.16770 * 62.58237 * 6 5 3 8 8 H 1.09002 * 109.50916 * 57.33878 * 7 6 5 9 9 C 1.52997 * 109.51166 * 177.48923 * 7 6 5 10 10 C 1.53290 * 109.22372 * 297.41950 * 7 6 5 11 11 N 1.47148 * 109.68162 * 180.68905 * 3 2 1 12 12 C 1.34785 * 120.98292 * 350.27594 * 11 3 2 13 13 O 1.21280 * 119.99709 * 5.11033 * 12 11 3 14 14 C 1.50696 * 119.99801 * 185.10241 * 12 11 3 15 15 C 1.53008 * 109.46694 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.46957 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.47062 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.47305 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99408 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00069 * 180.02562 * 18 17 16 21 21 N 1.31509 * 119.99837 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99933 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46806 * 60.00259 * 22 20 18 24 24 H 1.48494 * 109.47302 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47146 * 300.00280 * 22 20 18 26 26 H 1.08997 * 109.46962 * 305.92033 * 1 2 3 27 27 H 1.08998 * 109.47266 * 65.92272 * 1 2 3 28 28 H 1.08998 * 109.46940 * 185.92676 * 1 2 3 29 29 H 1.09005 * 109.46673 * 240.00034 * 2 1 3 30 30 H 1.08998 * 109.46957 * 120.00217 * 2 1 3 31 31 H 1.08996 * 109.51296 * 68.05295 * 5 3 2 32 32 H 1.09000 * 109.55786 * 307.92309 * 5 3 2 33 33 H 1.09007 * 109.46943 * 60.00620 * 9 7 6 34 34 H 1.08999 * 109.46815 * 180.02562 * 9 7 6 35 35 H 1.08996 * 109.47580 * 300.00254 * 9 7 6 36 36 H 1.09000 * 109.68201 * 172.02818 * 10 7 6 37 37 H 1.09004 * 109.67842 * 292.58040 * 10 7 6 38 38 H 1.09001 * 109.47621 * 300.00006 * 14 12 11 39 39 H 1.08997 * 109.47005 * 60.00839 * 14 12 11 40 40 H 1.09001 * 109.46864 * 300.00191 * 15 14 12 41 41 H 1.08991 * 109.47276 * 60.00202 * 15 14 12 42 42 H 1.09001 * 109.47294 * 300.00255 * 16 15 14 43 43 H 1.09008 * 109.47391 * 60.00061 * 16 15 14 44 44 H 1.08997 * 109.47201 * 299.99637 * 17 16 15 45 45 H 1.09004 * 109.47057 * 60.00352 * 17 16 15 46 46 H 0.97004 * 119.99976 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6805 1.9589 0.8900 5 6 1.5396 2.1670 -1.2549 6 8 2.1689 3.4478 -1.3413 7 6 3.5905 3.3932 -1.4822 8 1 3.8465 2.8095 -2.3665 9 6 4.1445 4.8120 -1.6271 10 6 4.1959 2.7315 -0.2391 11 7 3.5114 1.4480 -0.0167 12 6 4.2116 0.3108 0.1660 13 8 3.6317 -0.7506 0.2549 14 6 5.7149 0.3585 0.2597 15 6 6.2581 -1.0572 0.4647 16 6 7.7843 -1.0088 0.5604 17 6 8.3275 -2.4242 0.7661 18 6 9.8309 -2.3767 0.8598 19 1 10.3472 -1.4315 0.7801 20 6 10.5471 -3.5400 1.0461 21 7 9.9184 -4.6911 1.1417 22 14 12.4107 -3.4812 1.1615 23 1 12.8088 -2.6270 2.3092 24 1 12.9379 -4.8549 1.3613 25 1 12.9667 -2.9147 -0.0935 26 1 -0.3633 0.6029 0.8322 27 1 -0.3634 0.4192 -0.9382 28 1 -0.3633 -1.0222 0.1061 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.4590 2.2956 -1.1945 32 1 1.7875 1.5792 -2.1388 33 1 3.8897 5.3937 -0.7412 34 1 5.2283 4.7695 -1.7350 35 1 3.7102 5.2834 -2.5087 36 1 5.2602 2.5574 -0.3974 37 1 4.0539 3.3781 0.6269 38 1 6.1234 0.7741 -0.6615 39 1 6.0067 0.9855 1.1021 40 1 5.8496 -1.4732 1.3857 41 1 5.9663 -1.6839 -0.3778 42 1 8.1931 -0.5925 -0.3603 43 1 8.0759 -0.3821 1.4033 44 1 7.9188 -2.8400 1.6871 45 1 8.0360 -3.0513 -0.0765 46 1 10.4222 -5.5095 1.2731 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588640365.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:09 Heat of formation + Delta-G solvation = -97.663245 kcal Electronic energy + Delta-G solvation = -22901.770937 eV Core-core repulsion = 19597.983163 eV Total energy + Delta-G solvation = -3303.787773 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.87796 -38.65224 -35.63235 -34.86158 -34.50062 -32.58312 -31.96826 -29.79766 -27.97265 -26.73075 -25.79960 -24.22924 -22.48280 -21.77741 -21.22297 -19.96752 -19.10244 -17.13603 -16.71400 -16.40197 -16.16695 -16.00512 -15.37943 -14.88750 -14.76814 -14.46905 -13.89978 -13.82663 -13.53413 -13.23940 -12.77697 -12.68531 -12.57462 -12.50068 -12.23764 -11.90440 -11.73517 -11.59910 -11.52694 -11.40838 -11.00208 -10.95385 -10.83937 -10.52786 -10.51705 -10.42064 -10.38940 -9.61488 -9.33212 -9.08239 -8.95505 -8.61671 -8.30351 -5.95175 -3.97859 2.63460 2.70402 3.34601 3.35138 3.39580 3.41712 4.28240 4.39783 4.49290 4.54530 4.67516 4.71315 4.89103 4.92186 5.00397 5.12187 5.23961 5.25542 5.30066 5.31700 5.34454 5.35636 5.40127 5.47233 5.56808 5.60809 5.76484 5.83356 5.93293 6.11330 6.14190 6.14527 6.29134 6.51165 6.54448 6.80184 6.83077 7.00178 7.18482 7.26905 7.73643 7.89884 8.06030 8.18937 8.47781 9.09638 9.65752 11.16134 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.024136 B = 0.003016 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.807153 B = 9281.259659 C =10294.831565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.114 4.114 3 C 0.114 3.886 4 H 0.077 0.923 5 C 0.052 3.948 6 O -0.379 6.379 7 C 0.072 3.928 8 H 0.064 0.936 9 C -0.144 4.144 10 C 0.078 3.922 11 N -0.623 5.623 12 C 0.516 3.484 13 O -0.524 6.524 14 C -0.140 4.140 15 C -0.102 4.102 16 C -0.110 4.110 17 C 0.020 3.980 18 C -0.521 4.521 19 H 0.054 0.946 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.016 0.984 45 H 0.015 0.985 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.506 18.720 -4.809 26.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.151 4.151 3 C 0.010 3.990 4 H 0.094 0.906 5 C -0.026 4.026 6 O -0.298 6.298 7 C 0.013 3.987 8 H 0.082 0.918 9 C -0.202 4.202 10 C -0.045 4.045 11 N -0.359 5.359 12 C 0.306 3.694 13 O -0.400 6.400 14 C -0.180 4.180 15 C -0.140 4.140 16 C -0.148 4.148 17 C -0.017 4.017 18 C -0.560 4.560 19 H 0.072 0.928 20 C -0.145 4.145 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.123 0.877 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.873 18.107 -4.722 25.877 hybrid contribution 1.183 -0.165 0.070 1.197 sum -16.690 17.942 -4.653 24.942 Atomic orbital electron populations 1.21985 0.96669 1.02057 1.01163 1.22038 0.93838 0.93487 1.05761 1.22025 0.79790 0.98591 0.98558 0.90553 1.23132 0.98113 0.84525 0.96820 1.87955 1.19274 1.28362 1.94164 1.22505 0.81634 0.97881 0.96677 0.91799 1.21741 1.00961 0.94163 1.03308 1.22501 0.98243 0.85055 0.98694 1.48320 1.06155 1.08032 1.73345 1.21093 0.90511 0.82771 0.75000 1.90725 1.70569 1.29630 1.49028 1.21868 0.90425 1.02108 1.03553 1.21454 0.97121 0.92744 1.02708 1.21649 0.91873 1.01251 0.99999 1.19087 0.95225 0.90216 0.97127 1.21248 0.92210 0.93041 1.49483 0.92817 1.25038 0.98412 0.95599 0.95483 1.69962 1.35529 0.97982 1.50001 0.86671 0.85869 0.76974 0.78547 1.20281 1.21309 1.20279 0.92909 0.93124 0.92233 0.90833 0.88688 0.87694 0.92622 0.91485 0.90509 0.91405 0.88281 0.90499 0.89359 0.89192 0.91784 0.91815 0.93528 0.93502 0.96604 0.96618 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.41 37.16 0.35 -1.05 16 2 C -0.11 -1.30 3.89 -26.73 -0.10 -1.41 16 3 C 0.11 1.19 3.20 -67.42 -0.22 0.97 16 4 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 5 C 0.05 0.47 5.70 37.31 0.21 0.68 16 6 O -0.38 -3.75 10.38 -35.23 -0.37 -4.11 16 7 C 0.07 0.59 3.40 -26.58 -0.09 0.50 16 8 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 9 C -0.14 -0.88 9.57 37.16 0.36 -0.52 16 10 C 0.08 0.67 5.81 -3.54 -0.02 0.65 16 11 N -0.62 -7.03 3.02 -164.75 -0.50 -7.53 16 12 C 0.52 7.24 7.62 -10.98 -0.08 7.16 16 13 O -0.52 -8.95 11.53 5.56 0.06 -8.88 16 14 C -0.14 -1.87 4.16 -27.88 -0.12 -1.98 16 15 C -0.10 -1.82 4.50 -26.73 -0.12 -1.94 16 16 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 17 C 0.02 0.54 4.97 -27.88 -0.14 0.41 16 18 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 19 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.90 -27.58 13.29 55.43 0.74 -26.84 16 22 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.37 6.98 -51.93 -0.36 0.01 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.98 7.24 -51.93 -0.38 0.60 16 30 H 0.09 1.33 6.31 -51.93 -0.33 1.01 16 31 H 0.11 0.78 7.06 -51.93 -0.37 0.41 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 0.73 6.07 -51.93 -0.32 0.41 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.09 1.02 7.45 -51.93 -0.39 0.63 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 41 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.93 8.14 -51.92 -0.42 0.50 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 358.39 15.07 5.40 5.40 Total: -1.00 -32.92 358.39 -8.64 -41.56 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -8.44 Total: -3.71 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -0.52 Total: -12.77 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.24 Total: -34.37 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.30 Total: -13.00 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.92 -8.64 -41.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588640365.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.106 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds