Wall clock time and date at job start Tue Mar 31 2020 07:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47417 * 2 1 4 4 H 1.08998 * 109.70494 * 55.53062 * 3 2 1 5 5 C 1.53286 * 109.68336 * 176.07456 * 3 2 1 6 6 O 1.42961 * 109.22305 * 67.42163 * 5 3 2 7 7 C 1.43041 * 114.18862 * 62.58618 * 6 5 3 8 8 H 1.08997 * 109.50842 * 57.32661 * 7 6 5 9 9 C 1.52997 * 109.56381 * 177.51303 * 7 6 5 10 10 C 1.53300 * 109.17495 * 297.43685 * 7 6 5 11 11 N 1.47148 * 108.41473 * 52.28729 * 10 7 6 12 12 C 1.34778 * 120.98259 * 129.42375 * 11 10 7 13 13 O 1.21284 * 120.00056 * 179.97438 * 12 11 10 14 14 C 1.50703 * 120.00060 * 0.02562 * 12 11 10 15 15 C 1.53000 * 109.47279 * 179.97438 * 14 12 11 16 16 C 1.52992 * 109.46923 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.46923 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.47279 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99872 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00127 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99802 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 119.99814 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47389 * 89.99980 * 22 20 18 24 24 H 1.48503 * 109.47098 * 209.99856 * 22 20 18 25 25 H 1.48501 * 109.47337 * 329.99928 * 22 20 18 26 26 H 1.08994 * 109.47145 * 300.00069 * 1 2 3 27 27 H 1.08997 * 109.47169 * 60.00163 * 1 2 3 28 28 H 1.08994 * 109.47055 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46882 * 239.99544 * 2 1 3 30 30 H 1.08998 * 109.46972 * 120.00347 * 2 1 3 31 31 H 1.09003 * 109.51258 * 187.34649 * 5 3 2 32 32 H 1.09002 * 109.51282 * 307.44548 * 5 3 2 33 33 H 1.09006 * 109.47050 * 179.72356 * 9 7 6 34 34 H 1.09001 * 109.46833 * 299.71734 * 9 7 6 35 35 H 1.08995 * 109.47317 * 59.72023 * 9 7 6 36 36 H 1.09002 * 109.68260 * 292.54336 * 10 7 6 37 37 H 1.08999 * 109.68056 * 172.02769 * 10 7 6 38 38 H 1.09004 * 109.46725 * 300.00147 * 14 12 11 39 39 H 1.08994 * 109.46869 * 59.99449 * 14 12 11 40 40 H 1.08998 * 109.47019 * 300.00318 * 15 14 12 41 41 H 1.08997 * 109.46736 * 59.99906 * 15 14 12 42 42 H 1.08998 * 109.47835 * 300.00189 * 16 15 14 43 43 H 1.08997 * 109.47189 * 60.00554 * 16 15 14 44 44 H 1.09004 * 109.47539 * 300.00236 * 17 16 15 45 45 H 1.09007 * 109.47284 * 60.00213 * 17 16 15 46 46 H 0.97005 * 119.99858 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6151 1.9826 0.8460 5 6 3.5698 1.4492 0.0988 6 8 4.1214 0.9047 -1.1024 7 6 3.8191 1.6579 -2.2802 8 1 4.1718 2.6820 -2.1579 9 6 4.5087 1.0196 -3.4876 10 6 2.3019 1.6617 -2.4999 11 7 1.6532 2.1049 -1.2558 12 6 0.7322 3.0888 -1.2660 13 8 0.2083 3.4398 -0.2300 14 6 0.3524 3.7521 -2.5648 15 6 -0.7049 4.8256 -2.2993 16 6 -1.0899 5.4993 -3.6179 17 6 -2.1477 6.5723 -3.3524 18 6 -2.5275 7.2356 -4.6513 19 1 -2.0606 6.9233 -5.5737 20 6 -3.4701 8.2418 -4.6618 21 7 -3.8010 8.8210 -5.7952 22 14 -4.2769 8.7824 -3.0662 23 1 -3.4795 9.8750 -2.4535 24 1 -5.6512 9.2701 -3.3469 25 1 -4.3417 7.6318 -2.1296 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8899 31 1 3.9216 2.4725 0.2298 32 1 3.8823 0.8449 0.9505 33 1 4.2734 1.5919 -4.3850 34 1 5.5874 1.0173 -3.3307 35 1 4.1568 -0.0050 -3.6074 36 1 1.9650 0.6561 -2.7517 37 1 2.0500 2.3466 -3.3095 38 1 1.2349 4.2127 -3.0091 39 1 -0.0514 3.0061 -3.2492 40 1 -1.5871 4.3646 -1.8552 41 1 -0.3013 5.5716 -1.6148 42 1 -0.2075 5.9604 -4.0616 43 1 -1.4934 4.7535 -4.3027 44 1 -3.0301 6.1109 -2.9089 45 1 -1.7447 7.3183 -2.6673 46 1 -4.4645 9.5286 -5.8027 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588640367.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:14 Heat of formation + Delta-G solvation = -108.571191 kcal Electronic energy + Delta-G solvation = -23046.185972 eV Core-core repulsion = 19741.925195 eV Total energy + Delta-G solvation = -3304.260777 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.83935 -38.68776 -35.66311 -35.00895 -34.24686 -32.54450 -31.94518 -30.20163 -28.69993 -26.72291 -25.95484 -24.01250 -22.64861 -22.07831 -20.56743 -20.05151 -18.95606 -17.41518 -17.03266 -16.57650 -16.16338 -16.02708 -15.45408 -15.04383 -14.65167 -14.28066 -14.14547 -14.00255 -13.66538 -13.22365 -12.74494 -12.65323 -12.54105 -12.44244 -12.33159 -12.04519 -12.02902 -11.75768 -11.70950 -11.32197 -11.26640 -11.12540 -10.79465 -10.72468 -10.54888 -10.38355 -9.92009 -9.80636 -9.65330 -9.41855 -9.12347 -8.73975 -8.49682 -6.00940 -3.98396 2.59562 2.66351 3.32139 3.35056 3.42105 3.48179 4.23719 4.35226 4.46124 4.49840 4.61459 4.70213 4.77903 4.89668 4.99693 5.09366 5.15058 5.18565 5.19771 5.25582 5.29294 5.33831 5.34343 5.46698 5.52010 5.62873 5.72555 5.73280 5.78219 5.86611 6.00743 6.09273 6.12391 6.26287 6.41062 6.66813 6.76904 6.80359 6.98034 7.20189 7.37434 7.50293 7.84383 8.11412 8.57886 9.03966 9.62499 11.12577 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.025324 B = 0.003171 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.400536 B = 8828.414326 C = 9469.369931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C 0.104 3.896 4 H 0.107 0.893 5 C 0.055 3.945 6 O -0.375 6.375 7 C 0.072 3.928 8 H 0.064 0.936 9 C -0.144 4.144 10 C 0.077 3.923 11 N -0.616 5.616 12 C 0.518 3.482 13 O -0.533 6.533 14 C -0.138 4.138 15 C -0.106 4.106 16 C -0.102 4.102 17 C -0.015 4.015 18 C -0.520 4.520 19 H 0.071 0.929 20 C 0.065 3.935 21 N -0.906 5.906 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.265 1.265 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.015 0.985 45 H 0.011 0.989 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.469 -20.018 9.519 28.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C 0.001 3.999 4 H 0.125 0.875 5 C -0.023 4.023 6 O -0.294 6.294 7 C 0.014 3.986 8 H 0.082 0.918 9 C -0.202 4.202 10 C -0.046 4.046 11 N -0.352 5.352 12 C 0.307 3.693 13 O -0.409 6.409 14 C -0.178 4.178 15 C -0.144 4.144 16 C -0.140 4.140 17 C -0.053 4.053 18 C -0.557 4.557 19 H 0.089 0.911 20 C -0.136 4.136 21 N -0.545 5.545 22 Si 0.707 3.293 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.189 1.189 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.034 0.966 45 H 0.029 0.971 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.154 -19.837 9.997 28.067 hybrid contribution -0.627 0.602 0.684 1.106 sum 16.527 -19.235 10.681 27.518 Atomic orbital electron populations 1.21700 0.95221 1.01229 1.02377 1.21752 0.96547 0.95357 1.02696 1.21925 0.95106 0.94323 0.88581 0.87527 1.22981 0.91825 0.99529 0.87919 1.87961 1.74707 1.51935 1.14803 1.22510 0.93570 0.95853 0.86669 0.91784 1.21740 1.01236 1.01743 0.95462 1.22486 0.92968 1.01859 0.87314 1.48283 1.41892 1.37252 1.07767 1.21080 0.77742 0.78420 0.92035 1.90689 1.52597 1.62908 1.34674 1.21812 1.01665 0.99858 0.94471 1.21488 0.97123 0.96330 0.99423 1.21472 0.99618 0.98327 0.94559 1.19575 0.94194 0.94023 0.97466 1.21183 1.22680 1.18201 0.93684 0.91112 1.25042 0.96413 0.96039 0.96109 1.69922 1.33148 1.25761 1.25701 0.86774 0.78704 0.79351 0.84472 1.20313 1.21441 1.18911 0.92543 0.92867 0.92841 0.91268 0.91000 0.92649 0.87724 0.90496 0.91411 0.91521 0.90467 0.88345 0.89093 0.89027 0.91782 0.91821 0.92887 0.92848 0.96626 0.97077 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.80 37.16 0.36 -1.09 16 2 C -0.13 -1.07 5.35 -26.73 -0.14 -1.21 16 3 C 0.10 1.01 2.62 -67.42 -0.18 0.83 16 4 H 0.11 1.20 7.08 -51.93 -0.37 0.84 16 5 C 0.06 0.45 6.36 37.31 0.24 0.69 16 6 O -0.38 -3.37 10.10 -35.23 -0.36 -3.73 16 7 C 0.07 0.55 3.40 -26.58 -0.09 0.46 16 8 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 9 C -0.14 -0.83 9.57 37.16 0.36 -0.47 16 10 C 0.08 0.62 5.42 -3.53 -0.02 0.60 16 11 N -0.62 -6.51 2.21 -164.75 -0.36 -6.87 16 12 C 0.52 7.04 7.42 -10.98 -0.08 6.96 16 13 O -0.53 -9.23 15.45 5.55 0.09 -9.14 16 14 C -0.14 -1.77 4.07 -27.88 -0.11 -1.88 16 15 C -0.11 -1.78 4.50 -26.74 -0.12 -1.90 16 16 C -0.10 -2.01 5.15 -26.74 -0.14 -2.14 16 17 C -0.02 -0.37 4.04 -27.88 -0.11 -0.49 16 18 C -0.52 -15.12 9.66 -34.44 -0.33 -15.45 16 19 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 20 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 21 N -0.91 -28.42 13.96 55.43 0.77 -27.64 16 22 Si 0.88 22.41 27.47 -169.99 -4.67 17.74 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 25 H -0.26 -6.55 6.54 56.52 0.37 -6.18 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.61 7.49 -51.93 -0.39 0.22 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.60 7.14 -51.93 -0.37 0.23 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.58 7.53 -51.93 -0.39 0.19 16 37 H 0.10 0.68 6.05 -51.93 -0.31 0.37 16 38 H 0.09 1.00 7.66 -51.93 -0.40 0.60 16 39 H 0.09 1.02 8.01 -51.93 -0.42 0.61 16 40 H 0.06 1.15 8.10 -51.93 -0.42 0.72 16 41 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 45 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 46 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 360.58 15.07 5.43 5.43 Total: -1.00 -33.79 360.58 -8.05 -41.85 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -8.49 Total: -4.36 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -0.47 Total: -13.27 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.41 Total: -34.52 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.27 Total: -12.87 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.67 Total: 17.74 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.79 -8.05 -41.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588640367.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.726 kcal (2) G-P(sol) polarization free energy of solvation -33.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds