Wall clock time and date at job start Tue Mar 31 2020 07:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47013 * 2 1 4 4 H 1.09004 * 109.46930 * 305.00026 * 3 2 1 5 5 N 1.46506 * 109.47035 * 64.99796 * 3 2 1 6 6 C 1.34767 * 120.00003 * 274.99925 * 5 3 2 7 7 O 1.21281 * 120.00199 * 0.02562 * 6 5 3 8 8 C 1.50706 * 119.99889 * 179.97438 * 6 5 3 9 9 C 1.52998 * 109.47148 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47392 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.47746 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47475 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00176 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00031 * 180.02562 * 12 11 10 15 15 N 1.31506 * 120.00024 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99764 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47282 * 90.00075 * 16 14 12 18 18 H 1.48507 * 109.46971 * 209.99515 * 16 14 12 19 19 H 1.48494 * 109.47336 * 329.99248 * 16 14 12 20 20 C 1.52997 * 109.47143 * 184.99961 * 3 2 1 21 21 H 1.09000 * 110.27344 * 65.63791 * 20 3 2 22 22 C 1.54951 * 110.30640 * 187.83191 * 20 3 2 23 23 C 1.55309 * 100.93868 * 155.36322 * 22 20 3 24 24 C 1.54383 * 102.25379 * 325.86632 * 23 22 20 25 25 O 1.43234 * 107.58697 * 21.35498 * 24 23 22 26 26 H 1.09001 * 109.46690 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47116 * 299.99803 * 1 2 3 28 28 H 1.08988 * 109.47502 * 60.00190 * 1 2 3 29 29 H 1.08997 * 109.47159 * 240.00180 * 2 1 3 30 30 H 1.09005 * 109.47284 * 119.99696 * 2 1 3 31 31 H 0.96996 * 119.99678 * 95.00711 * 5 3 2 32 32 H 1.08994 * 109.47394 * 300.00422 * 8 6 5 33 33 H 1.09001 * 109.46828 * 60.00478 * 8 6 5 34 34 H 1.09007 * 109.47327 * 300.00182 * 9 8 6 35 35 H 1.08997 * 109.47657 * 59.99911 * 9 8 6 36 36 H 1.09007 * 109.46654 * 300.00130 * 10 9 8 37 37 H 1.09006 * 109.47007 * 59.99390 * 10 9 8 38 38 H 1.08994 * 109.46917 * 299.99976 * 11 10 9 39 39 H 1.09001 * 109.46912 * 59.99792 * 11 10 9 40 40 H 0.97001 * 120.00435 * 180.02562 * 15 14 12 41 41 H 1.08998 * 111.12509 * 273.27366 * 22 20 3 42 42 H 1.08994 * 111.12888 * 37.44237 * 22 20 3 43 43 H 1.09003 * 110.84407 * 207.67670 * 23 22 20 44 44 H 1.08999 * 111.02309 * 84.13231 * 23 22 20 45 45 H 1.09004 * 109.83020 * 261.85064 * 24 23 22 46 46 H 1.08992 * 109.83255 * 140.87367 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 7 1.6523 2.0975 1.2518 6 6 0.4351 2.6644 1.3669 7 8 -0.3396 2.6319 0.4344 8 6 0.0362 3.3376 2.6549 9 6 -1.3830 3.8935 2.5215 10 6 -1.7879 4.5775 3.8287 11 6 -3.2068 5.1340 3.6952 12 6 -3.6058 5.8072 4.9831 13 1 -2.9164 5.8350 5.8140 14 6 -4.8513 6.3866 5.1010 15 7 -5.6909 6.3523 4.0895 16 14 -5.3459 7.2205 6.6977 17 1 -4.9580 8.6531 6.6489 18 1 -6.8160 7.1117 6.8782 19 1 -4.6574 6.5596 7.8353 20 6 3.5648 1.4444 -0.1257 21 1 3.8642 1.0503 -1.0969 22 6 4.1187 2.8783 0.0692 23 6 5.5652 2.5733 0.5451 24 6 5.3748 1.2780 1.3632 25 8 4.1531 0.6684 0.9302 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5137 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.2719 2.1233 1.9977 32 1 0.0672 2.6130 3.4685 33 1 0.7275 4.1530 2.8679 34 1 -1.4145 4.6181 1.7077 35 1 -2.0742 3.0780 2.3086 36 1 -1.7563 3.8532 4.6427 37 1 -1.0966 5.3931 4.0412 38 1 -3.2379 5.8583 2.8814 39 1 -3.8983 4.3186 3.4825 40 1 -6.5671 6.7603 4.1723 41 1 4.1226 3.4292 -0.8714 42 1 3.5583 3.4153 0.8345 43 1 5.9440 3.3781 1.1754 44 1 6.2281 2.4024 -0.3031 45 1 5.3126 1.5170 2.4249 46 1 6.2099 0.6011 1.1836 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588656816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:33 Heat of formation + Delta-G solvation = -119.454528 kcal Electronic energy + Delta-G solvation = -22601.349883 eV Core-core repulsion = 19296.617169 eV Total energy + Delta-G solvation = -3304.732714 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.56788 -39.21797 -35.85915 -34.73775 -32.81091 -32.55602 -32.13896 -30.24627 -29.44158 -26.23390 -25.26529 -22.69017 -22.46190 -21.68370 -20.61608 -20.28556 -19.91901 -17.38706 -16.94678 -16.31362 -16.08723 -15.95789 -15.68299 -14.85001 -14.52448 -14.42614 -14.00152 -13.66466 -13.58144 -13.22440 -12.79790 -12.57116 -12.54575 -12.17198 -12.04176 -11.73470 -11.64596 -11.60383 -11.38709 -11.28249 -10.96436 -10.91464 -10.81911 -10.50069 -10.46799 -10.37331 -9.96420 -9.68012 -9.57827 -9.18256 -8.99216 -8.94769 -8.28441 -5.93197 -3.95618 2.80165 3.18648 3.35323 3.36973 3.41310 3.44657 4.03197 4.22813 4.45065 4.50718 4.65542 4.78281 4.84615 4.99638 5.02132 5.12797 5.27385 5.30688 5.37271 5.40330 5.41534 5.43003 5.43556 5.51287 5.61581 5.72001 5.84422 5.92070 5.98022 6.16273 6.18255 6.34994 6.42444 6.49621 6.58764 6.62337 6.88113 7.06205 7.23481 7.54343 7.76645 7.93121 8.08589 8.36249 8.50481 9.12223 9.67925 11.18180 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.027626 B = 0.002702 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.301690 B =10358.415108 C =10961.459995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C 0.148 3.852 4 H 0.098 0.902 5 N -0.728 5.728 6 C 0.511 3.489 7 O -0.530 6.530 8 C -0.140 4.140 9 C -0.102 4.102 10 C -0.110 4.110 11 C 0.020 3.980 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.073 3.927 21 H 0.083 0.917 22 C -0.154 4.154 23 C -0.157 4.157 24 C 0.049 3.951 25 O -0.374 6.374 26 H 0.044 0.956 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.400 0.600 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.805 -11.303 -8.742 28.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C 0.043 3.957 4 H 0.116 0.884 5 N -0.381 5.381 6 C 0.299 3.701 7 O -0.406 6.406 8 C -0.180 4.180 9 C -0.140 4.140 10 C -0.148 4.148 11 C -0.017 4.017 12 C -0.558 4.558 13 H 0.072 0.928 14 C -0.146 4.146 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C 0.015 3.985 21 H 0.101 0.899 22 C -0.192 4.192 23 C -0.194 4.194 24 C -0.028 4.028 25 O -0.294 6.294 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.235 0.765 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 23.968 -11.460 -9.394 28.179 hybrid contribution 0.186 0.672 1.140 1.336 sum 24.154 -10.789 -8.254 27.711 Atomic orbital electron populations 1.21824 0.94707 1.00541 1.03294 1.21841 0.96867 0.95520 1.02407 1.21133 0.91672 0.94307 0.88603 0.88435 1.46090 1.17257 1.58451 1.16331 1.21013 0.80856 0.77718 0.90496 1.90710 1.50736 1.58381 1.40778 1.21795 1.00729 1.00794 0.94636 1.21433 0.92459 1.00431 0.99664 1.21651 1.00257 0.98406 0.94493 1.19090 0.89876 0.95875 0.96855 1.21292 0.99699 1.35481 0.99355 0.92778 1.25040 0.96701 0.96436 0.96402 1.69972 1.07692 1.45174 1.30662 0.86616 0.77622 0.79851 0.84026 1.20725 1.21258 1.19920 1.23334 0.92677 0.90603 0.91852 0.89941 1.23334 0.95495 0.97075 1.03263 1.23128 0.97492 0.98156 1.00664 1.23139 0.87281 0.93680 0.98669 1.88455 1.37365 1.49781 1.53794 0.93715 0.92185 0.92266 0.91664 0.91211 0.76548 0.89297 0.89390 0.91860 0.91830 0.93527 0.93563 0.96624 0.96601 0.93056 0.89698 0.89589 0.89891 0.90567 0.91168 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.51 37.16 0.32 -1.49 16 2 C -0.13 -1.30 5.36 -26.73 -0.14 -1.44 16 3 C 0.15 1.42 2.24 -67.93 -0.15 1.27 16 4 H 0.10 1.06 7.58 -51.93 -0.39 0.67 16 5 N -0.73 -7.41 3.99 -53.80 -0.21 -7.63 16 6 C 0.51 6.92 6.40 -10.99 -0.07 6.85 16 7 O -0.53 -9.09 13.12 5.56 0.07 -9.01 16 8 C -0.14 -1.87 5.70 -27.88 -0.16 -2.03 16 9 C -0.10 -1.84 4.50 -26.73 -0.12 -1.96 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 11 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 12 C -0.52 -15.13 9.11 -34.44 -0.31 -15.45 16 13 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.75 13.28 55.43 0.74 -27.02 16 16 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 C 0.07 0.55 3.24 -25.70 -0.08 0.47 16 21 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 22 C -0.15 -0.99 6.45 -24.48 -0.16 -1.15 16 23 C -0.16 -0.80 7.02 -24.78 -0.17 -0.98 16 24 C 0.05 0.30 7.79 37.88 0.30 0.59 16 25 O -0.37 -3.17 10.09 -35.23 -0.36 -3.53 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.86 5.64 -51.93 -0.29 0.57 16 28 H 0.06 0.79 7.85 -51.94 -0.41 0.38 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.74 7.80 -51.93 -0.40 0.34 16 31 H 0.40 3.38 7.92 -40.82 -0.32 3.06 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.21 8.10 -51.92 -0.42 0.79 16 35 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 36 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 0.61 6.77 -51.93 -0.35 0.26 16 43 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 363.06 15.07 5.47 5.47 Total: -1.00 -33.13 363.06 -8.92 -42.05 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -8.48 Total: -1.57 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -1.14 Total: -15.80 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.52 Total: -34.64 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -0.28 Total: -12.54 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.13 -8.92 -42.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588656816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.401 kcal (2) G-P(sol) polarization free energy of solvation -33.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds