Wall clock time and date at job start Tue Mar 31 2020 07:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47188 * 2 1 4 4 H 1.08999 * 109.47058 * 305.00139 * 3 2 1 5 5 N 1.46499 * 109.47014 * 65.00471 * 3 2 1 6 6 C 1.34777 * 119.99665 * 275.27733 * 5 3 2 7 7 O 1.21283 * 119.99990 * 359.71991 * 6 5 3 8 8 C 1.50698 * 119.99538 * 179.72653 * 6 5 3 9 9 C 1.52999 * 109.47004 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47303 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.47303 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.47525 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99441 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00075 * 180.02562 * 12 11 10 15 15 N 1.31523 * 119.99908 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00405 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46847 * 90.00074 * 16 14 12 18 18 H 1.48501 * 109.47058 * 210.00299 * 16 14 12 19 19 H 1.48502 * 109.46888 * 330.00390 * 16 14 12 20 20 C 1.52999 * 109.46675 * 185.00585 * 3 2 1 21 21 H 1.09001 * 109.82057 * 300.56219 * 20 3 2 22 22 C 1.54387 * 109.82390 * 179.59127 * 20 3 2 23 23 C 1.55308 * 102.24903 * 219.12740 * 22 20 3 24 24 C 1.54940 * 100.94261 * 34.13185 * 23 22 20 25 25 O 1.43225 * 109.83639 * 61.45578 * 20 3 2 26 26 H 1.08995 * 109.47136 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46778 * 299.99805 * 1 2 3 28 28 H 1.08998 * 109.47035 * 59.99571 * 1 2 3 29 29 H 1.09001 * 109.46982 * 240.00709 * 2 1 3 30 30 H 1.08993 * 109.47720 * 120.00490 * 2 1 3 31 31 H 0.97001 * 119.99790 * 94.99446 * 5 3 2 32 32 H 1.09003 * 109.47112 * 299.99065 * 8 6 5 33 33 H 1.08993 * 109.47916 * 59.99687 * 8 6 5 34 34 H 1.09000 * 109.47527 * 299.99994 * 9 8 6 35 35 H 1.09007 * 109.47302 * 59.99534 * 9 8 6 36 36 H 1.08995 * 109.47540 * 300.00020 * 10 9 8 37 37 H 1.09001 * 109.46719 * 60.00219 * 10 9 8 38 38 H 1.09009 * 109.47378 * 300.00237 * 11 10 9 39 39 H 1.09007 * 109.47302 * 60.00055 * 11 10 9 40 40 H 0.96995 * 120.00181 * 179.97438 * 15 14 12 41 41 H 1.09004 * 110.85053 * 337.31421 * 22 20 3 42 42 H 1.08996 * 110.85153 * 100.93952 * 22 20 3 43 43 H 1.09008 * 111.12436 * 276.21205 * 23 22 20 44 44 H 1.08997 * 111.16353 * 152.07075 * 23 22 20 45 45 H 1.09004 * 110.31132 * 204.64065 * 24 23 22 46 46 H 1.09003 * 110.30705 * 82.47174 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6526 2.0975 1.2519 6 6 0.4332 2.6595 1.3689 7 8 -0.3414 2.6275 0.4362 8 6 0.0323 3.3278 2.6588 9 6 -1.3885 3.8797 2.5271 10 6 -1.7958 4.5577 3.8368 11 6 -3.2164 5.1102 3.7049 12 6 -3.6174 5.7786 4.9947 13 1 -2.9280 5.8060 5.8256 14 6 -4.8646 6.3539 5.1143 15 7 -5.2147 6.9367 6.2402 16 14 -6.0572 6.3057 3.6774 17 1 -6.8886 5.0785 3.7652 18 1 -6.9351 7.5027 3.7224 19 1 -5.2960 6.2978 2.4024 20 6 3.5648 1.4443 -0.1259 21 1 4.0052 0.8978 0.7082 22 6 4.0877 2.8969 -0.1370 23 6 5.2240 2.8300 -1.1936 24 6 4.6435 1.7898 -2.1844 25 8 3.9510 0.8357 -1.3636 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 2.2721 2.1230 1.9978 32 1 0.0663 2.6009 3.4704 33 1 0.7207 4.1450 2.8739 34 1 -1.4222 4.6066 1.7155 35 1 -2.0773 3.0627 2.3118 36 1 -1.7623 3.8306 4.6481 37 1 -1.1072 5.3747 4.0524 38 1 -3.2496 5.8376 2.8936 39 1 -3.9054 4.2935 3.4890 40 1 -6.0919 7.3419 6.3243 41 1 3.3058 3.5882 -0.4515 42 1 4.4825 3.1746 0.8402 43 1 6.1532 2.4732 -0.7491 44 1 5.3685 3.7957 -1.6778 45 1 5.4478 1.3018 -2.7350 46 1 3.9493 2.2703 -2.8737 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588656817.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:36 Heat of formation + Delta-G solvation = -117.585117 kcal Electronic energy + Delta-G solvation = -22509.982328 eV Core-core repulsion = 19205.330678 eV Total energy + Delta-G solvation = -3304.651650 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.57431 -39.37148 -36.00784 -34.90122 -32.88866 -32.57121 -32.11158 -30.34627 -29.77236 -26.45550 -25.37186 -22.79755 -22.19311 -21.68510 -20.83601 -20.24933 -20.01002 -17.50234 -17.07317 -16.60729 -16.25534 -16.05564 -15.70580 -14.87490 -14.66634 -14.22210 -14.00834 -13.82293 -13.63088 -13.37555 -12.83723 -12.63924 -12.52047 -12.23480 -12.14444 -12.06805 -11.77014 -11.72431 -11.48451 -11.32076 -11.10598 -11.03985 -10.88359 -10.72276 -10.51932 -9.98020 -9.92509 -9.78159 -9.63785 -9.39443 -9.10978 -9.10186 -8.48504 -5.99788 -3.97213 2.69709 2.87270 3.36079 3.42999 3.49115 3.59594 4.02026 4.14455 4.40710 4.50878 4.63923 4.73934 4.80559 4.87696 5.05346 5.07706 5.23150 5.24386 5.29260 5.31461 5.32355 5.35502 5.40017 5.46888 5.60612 5.71175 5.80031 5.83078 5.94053 6.04358 6.06642 6.16794 6.32792 6.39843 6.43682 6.59478 6.69625 6.83792 7.00285 7.39132 7.40671 7.52057 7.85745 8.25010 8.59176 9.05188 9.63670 11.13733 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.030787 B = 0.002692 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.255394 B =10397.414758 C =10736.943426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C 0.135 3.865 4 H 0.090 0.910 5 N -0.730 5.730 6 C 0.514 3.486 7 O -0.529 6.529 8 C -0.139 4.139 9 C -0.105 4.105 10 C -0.102 4.102 11 C -0.015 4.015 12 C -0.519 4.519 13 H 0.071 0.929 14 C 0.064 3.936 15 N -0.906 5.906 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.264 1.264 20 C 0.076 3.924 21 H 0.084 0.916 22 C -0.151 4.151 23 C -0.157 4.157 24 C 0.048 3.952 25 O -0.370 6.370 26 H 0.044 0.956 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.398 0.602 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.015 0.985 39 H 0.011 0.989 40 H 0.262 0.738 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.553 -12.366 -14.628 30.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.167 4.167 3 C 0.030 3.970 4 H 0.108 0.892 5 N -0.385 5.385 6 C 0.302 3.698 7 O -0.404 6.404 8 C -0.179 4.179 9 C -0.143 4.143 10 C -0.140 4.140 11 C -0.053 4.053 12 C -0.557 4.557 13 H 0.089 0.911 14 C -0.136 4.136 15 N -0.546 5.546 16 Si 0.707 3.293 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.189 1.189 20 C 0.018 3.982 21 H 0.102 0.898 22 C -0.188 4.188 23 C -0.195 4.195 24 C -0.028 4.028 25 O -0.289 6.289 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.232 0.768 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.034 0.966 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.105 0.895 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 22.793 -12.501 -15.304 30.166 hybrid contribution -0.320 0.271 -0.170 0.453 sum 22.472 -12.229 -15.474 29.900 Atomic orbital electron populations 1.21809 0.94748 1.00514 1.03180 1.21879 0.96974 0.95557 1.02289 1.21283 0.93299 0.94232 0.88185 0.89177 1.46015 1.17246 1.59123 1.16080 1.20986 0.80782 0.77560 0.90519 1.90716 1.50845 1.57992 1.40883 1.21780 1.00565 1.01003 0.94574 1.21473 0.92782 1.00490 0.99591 1.21474 0.99019 0.98856 0.94665 1.19578 0.92347 0.95775 0.97583 1.21187 1.00653 1.35235 0.98616 0.91126 1.25046 0.98122 0.94833 0.95642 1.69924 1.21016 1.38171 1.25460 0.86771 0.81149 0.77529 0.83835 1.20316 1.21471 1.18898 1.22909 0.93672 0.93543 0.88126 0.89799 1.23185 0.98480 0.96589 1.00581 1.23274 0.98837 1.00397 0.96953 1.23430 0.95698 0.90137 0.93561 1.88438 1.75967 1.36011 1.28453 0.93709 0.92327 0.92271 0.90652 0.92202 0.76840 0.89071 0.89101 0.91833 0.91819 0.92897 0.92895 0.96643 0.97070 0.92830 0.90009 0.89733 0.90296 0.89772 0.89537 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.51 37.16 0.32 -1.43 16 2 C -0.13 -1.28 5.54 -26.73 -0.15 -1.42 16 3 C 0.14 1.27 1.90 -67.93 -0.13 1.14 16 4 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 5 N -0.73 -6.57 4.65 -53.80 -0.25 -6.82 16 6 C 0.51 6.44 6.39 -10.99 -0.07 6.37 16 7 O -0.53 -8.66 13.11 5.55 0.07 -8.59 16 8 C -0.14 -1.69 5.70 -27.88 -0.16 -1.85 16 9 C -0.11 -1.75 4.50 -26.73 -0.12 -1.87 16 10 C -0.10 -2.01 5.15 -26.73 -0.14 -2.15 16 11 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 12 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 13 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 14 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 15 N -0.91 -28.48 13.96 55.43 0.77 -27.71 16 16 Si 0.88 22.45 27.47 -169.99 -4.67 17.78 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 19 H -0.26 -6.55 6.54 56.52 0.37 -6.18 16 20 C 0.08 0.57 3.14 -26.00 -0.08 0.49 16 21 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 22 C -0.15 -0.94 6.18 -24.78 -0.15 -1.09 16 23 C -0.16 -0.83 7.16 -24.48 -0.18 -1.01 16 24 C 0.05 0.32 7.78 38.18 0.30 0.61 16 25 O -0.37 -3.31 10.34 -35.23 -0.36 -3.67 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.80 5.63 -51.93 -0.29 0.51 16 28 H 0.06 0.79 7.84 -51.93 -0.41 0.39 16 29 H 0.07 0.75 7.60 -51.93 -0.39 0.36 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.40 2.44 8.60 -40.82 -0.35 2.09 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 1.11 8.10 -51.93 -0.42 0.69 16 35 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.02 0.38 7.20 -51.92 -0.37 0.01 16 39 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 40 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 41 H 0.08 0.61 7.85 -51.93 -0.41 0.20 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.37 8.14 -51.92 -0.42 -0.06 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 361.47 15.07 5.45 5.45 Total: -1.00 -33.80 361.47 -8.61 -42.41 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -8.51 Total: -2.51 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -1.10 Total: -16.34 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.52 Total: -34.52 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.29 Total: -12.26 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.67 Total: 17.78 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.80 -8.61 -42.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588656817.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.173 kcal (2) G-P(sol) polarization free energy of solvation -33.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds