Wall clock time and date at job start Tue Mar 31 2020 07:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47196 * 2 1 4 4 H 1.09001 * 109.46885 * 54.99742 * 3 2 1 5 5 N 1.46498 * 109.47088 * 295.00080 * 3 2 1 6 6 C 1.34768 * 120.00216 * 84.99897 * 5 3 2 7 7 O 1.21279 * 120.00306 * 0.02562 * 6 5 3 8 8 C 1.50704 * 120.00150 * 179.97438 * 6 5 3 9 9 C 1.52994 * 109.47404 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47218 * 179.97438 * 9 8 6 11 11 C 1.53003 * 109.46868 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.47054 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99544 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00294 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00065 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00270 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.46757 * 0.02562 * 16 14 12 18 18 H 1.48495 * 109.47087 * 120.00101 * 16 14 12 19 19 H 1.48501 * 109.47207 * 240.00589 * 16 14 12 20 20 C 1.53002 * 109.47011 * 174.99586 * 3 2 1 21 21 H 1.09002 * 110.55002 * 61.42835 * 20 3 2 22 22 C 1.55227 * 110.77658 * 184.28779 * 20 3 2 23 23 C 1.54813 * 101.98357 * 155.50393 * 22 20 3 24 24 C 1.54098 * 104.30472 * 339.26359 * 23 22 20 25 25 O 1.43744 * 107.29564 * 357.90152 * 24 23 22 26 26 H 1.09004 * 109.47090 * 300.00367 * 1 2 3 27 27 H 1.09003 * 109.46646 * 59.99703 * 1 2 3 28 28 H 1.08994 * 109.47477 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47322 * 239.99788 * 2 1 3 30 30 H 1.09005 * 109.46670 * 119.99760 * 2 1 3 31 31 H 0.97005 * 119.99396 * 265.00176 * 5 3 2 32 32 H 1.09005 * 109.47223 * 300.00252 * 8 6 5 33 33 H 1.09002 * 109.47088 * 60.00311 * 8 6 5 34 34 H 1.09005 * 109.47147 * 300.00311 * 9 8 6 35 35 H 1.09004 * 109.47112 * 59.99732 * 9 8 6 36 36 H 1.08997 * 109.47325 * 299.99897 * 10 9 8 37 37 H 1.09002 * 109.47177 * 60.00383 * 10 9 8 38 38 H 1.08994 * 109.47313 * 299.99649 * 11 10 9 39 39 H 1.09002 * 109.47429 * 60.00528 * 11 10 9 40 40 H 0.97000 * 119.99909 * 179.97438 * 15 14 12 41 41 H 1.08999 * 110.89081 * 37.37124 * 22 20 3 42 42 H 1.09003 * 111.02102 * 273.69638 * 22 20 3 43 43 H 1.09002 * 110.48794 * 220.51904 * 23 22 20 44 44 H 1.09002 * 110.48657 * 98.00326 * 23 22 20 45 45 H 1.08999 * 109.88182 * 117.33024 * 24 23 22 46 46 H 1.08997 * 109.87763 * 238.47782 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6525 2.0975 -1.2518 6 6 0.4353 2.6644 -1.3670 7 8 -0.3392 2.6327 -0.4342 8 6 0.0368 3.3387 -2.6545 9 6 -1.3824 3.8943 -2.5213 10 6 -1.7867 4.5794 -3.8282 11 6 -3.2058 5.1356 -3.6947 12 6 -3.6042 5.8098 -4.9823 13 1 -2.9144 5.8384 -5.8128 14 6 -4.8497 6.3893 -5.1003 15 7 -5.6898 6.3541 -4.0891 16 14 -5.3438 7.2245 -6.6965 17 1 -4.2285 7.1271 -7.6719 18 1 -6.5473 6.5559 -7.2530 19 1 -5.6487 8.6539 -6.4336 20 6 3.5649 1.4443 0.1258 21 1 4.0194 0.9308 -0.7215 22 6 4.1065 2.8947 0.2371 23 6 5.4536 2.6796 0.9690 24 6 5.3006 1.3069 1.6525 25 8 3.9732 0.8339 1.3689 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.2721 2.1231 -1.9978 32 1 0.7283 4.1542 -2.8667 33 1 0.0681 2.6146 -3.4687 34 1 -2.0736 3.0785 -2.3093 35 1 -1.4143 4.6182 -1.7070 36 1 -1.0955 5.3952 -4.0397 37 1 -1.7548 3.8557 -4.6428 38 1 -3.8972 4.3201 -3.4831 39 1 -3.2373 5.8594 -2.8803 40 1 -6.5659 6.7621 -4.1721 41 1 3.4359 3.5155 0.8312 42 1 4.2651 3.3297 -0.7497 43 1 5.6128 3.4604 1.7127 44 1 6.2770 2.6605 0.2550 45 1 6.0361 0.6093 1.2519 46 1 5.4345 1.4120 2.7291 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588656818.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:40 Heat of formation + Delta-G solvation = -120.602185 kcal Electronic energy + Delta-G solvation = -22374.547924 eV Core-core repulsion = 19069.765444 eV Total energy + Delta-G solvation = -3304.782480 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.45302 -39.33058 -35.99701 -34.77321 -32.84988 -32.55389 -32.09101 -30.22591 -29.44167 -26.27608 -25.23738 -22.76753 -22.43762 -21.51114 -20.93133 -20.29478 -19.93697 -17.26690 -17.05613 -16.32884 -16.12351 -15.84760 -15.54865 -15.15784 -14.62792 -14.42658 -14.03917 -13.87425 -13.49873 -13.26551 -12.76376 -12.59157 -12.41047 -12.13263 -12.04543 -11.79695 -11.66765 -11.63781 -11.43519 -11.10025 -10.99020 -10.93793 -10.85291 -10.50821 -10.46917 -10.39290 -10.07611 -9.74487 -9.59614 -9.20236 -9.08675 -8.95349 -8.29538 -5.94078 -3.96502 2.75042 2.86688 3.33847 3.40992 3.44888 3.69248 4.05254 4.21814 4.47658 4.49984 4.59299 4.73917 4.81115 4.97339 5.03954 5.10044 5.24250 5.28597 5.34267 5.36847 5.39318 5.41658 5.46008 5.54654 5.65625 5.70396 5.84240 5.88951 5.96676 6.10678 6.16071 6.32120 6.34907 6.43862 6.53102 6.57794 6.86233 7.04381 7.21931 7.44914 7.75936 7.91929 8.07643 8.30598 8.49415 9.11530 9.67165 11.17285 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.034094 B = 0.002500 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.062649 B =11198.384075 C =11674.894786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C 0.152 3.848 4 H 0.095 0.905 5 N -0.731 5.731 6 C 0.514 3.486 7 O -0.526 6.526 8 C -0.139 4.139 9 C -0.103 4.103 10 C -0.110 4.110 11 C 0.019 3.981 12 C -0.519 4.519 13 H 0.054 0.946 14 C 0.054 3.946 15 N -0.895 5.895 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.071 3.929 21 H 0.073 0.927 22 C -0.149 4.149 23 C -0.157 4.157 24 C 0.047 3.953 25 O -0.367 6.367 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.397 0.603 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.259 0.741 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.059 0.941 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.847 -11.567 8.862 28.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.168 4.168 3 C 0.047 3.953 4 H 0.113 0.887 5 N -0.386 5.386 6 C 0.302 3.698 7 O -0.401 6.401 8 C -0.179 4.179 9 C -0.141 4.141 10 C -0.148 4.148 11 C -0.018 4.018 12 C -0.557 4.557 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C 0.013 3.987 21 H 0.091 0.909 22 C -0.186 4.186 23 C -0.195 4.195 24 C -0.030 4.030 25 O -0.285 6.285 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.231 0.769 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.077 0.923 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 23.978 -11.680 9.747 28.397 hybrid contribution 0.234 0.624 -1.346 1.502 sum 24.212 -11.056 8.401 27.911 Atomic orbital electron populations 1.21810 0.94564 1.00591 1.03322 1.21899 0.97176 0.95444 1.02260 1.20822 0.91560 0.94423 0.88487 0.88673 1.46002 1.17486 1.59183 1.15881 1.21005 0.80679 0.77546 0.90576 1.90725 1.50686 1.57910 1.40751 1.21800 1.00818 1.00800 0.94444 1.21445 0.92415 1.00478 0.99733 1.21647 1.00280 0.98402 0.94445 1.19102 0.89874 0.95905 0.96900 1.21322 0.99675 1.35372 0.99363 0.92727 1.25047 0.96729 0.96452 0.96405 1.69987 1.07634 1.45259 1.30588 0.86560 0.78453 0.79242 0.83876 1.19795 1.21060 1.21059 1.23334 0.94699 0.92524 0.88138 0.90880 1.23201 0.96539 0.97124 1.01761 1.22948 0.98236 0.97956 1.00373 1.23164 0.84792 0.94163 1.00867 1.88881 1.31138 1.68894 1.39600 0.92128 0.92259 0.93652 0.92218 0.90644 0.76895 0.89237 0.89228 0.91797 0.91817 0.93535 0.93518 0.96592 0.96596 0.93110 0.90080 0.89926 0.90345 0.90622 0.92311 0.89725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.52 37.16 0.32 -1.49 16 2 C -0.13 -1.32 5.55 -26.73 -0.15 -1.47 16 3 C 0.15 1.50 2.05 -67.93 -0.14 1.37 16 4 H 0.10 1.19 7.58 -51.93 -0.39 0.79 16 5 N -0.73 -6.89 4.79 -53.80 -0.26 -7.15 16 6 C 0.51 6.75 6.40 -10.99 -0.07 6.68 16 7 O -0.53 -8.99 13.12 5.56 0.07 -8.92 16 8 C -0.14 -1.77 5.70 -27.88 -0.16 -1.93 16 9 C -0.10 -1.82 4.50 -26.73 -0.12 -1.94 16 10 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 11 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 12 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 13 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 14 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -27.65 13.29 55.43 0.74 -26.91 16 16 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 C 0.07 0.56 2.90 -25.55 -0.07 0.49 16 21 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 22 C -0.15 -1.02 6.39 -24.60 -0.16 -1.18 16 23 C -0.16 -0.88 7.00 -25.20 -0.18 -1.06 16 24 C 0.05 0.31 7.70 37.73 0.29 0.60 16 25 O -0.37 -3.44 10.60 -35.23 -0.37 -3.81 16 26 H 0.06 0.84 7.85 -51.93 -0.41 0.43 16 27 H 0.06 0.83 5.65 -51.93 -0.29 0.54 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.77 7.64 -51.93 -0.40 0.38 16 31 H 0.40 2.57 8.60 -40.82 -0.35 2.22 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 35 H 0.06 1.21 8.10 -51.93 -0.42 0.78 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.08 0.67 8.06 -51.93 -0.42 0.25 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 365.67 15.07 5.51 5.51 Total: -1.00 -33.50 365.67 -9.02 -42.52 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -8.56 Total: -2.40 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -1.13 Total: -15.78 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.48 Total: -34.06 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -0.30 Total: -12.73 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.50 -9.02 -42.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588656818.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.085 kcal (2) G-P(sol) polarization free energy of solvation -33.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds