Wall clock time and date at job start Tue Mar 31 2020 07:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 6 6 C 1.34781 * 119.99874 * 85.00543 * 5 3 2 7 7 O 1.21278 * 120.00033 * 359.97438 * 6 5 3 8 8 C 1.50703 * 120.00101 * 179.97438 * 6 5 3 9 9 C 1.52996 * 109.47006 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47141 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47438 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47321 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99880 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00134 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99938 * 179.97438 * 14 12 11 16 16 Si 1.86792 * 119.99804 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47067 * 90.00111 * 16 14 12 18 18 H 1.48500 * 109.47007 * 209.99785 * 16 14 12 19 19 H 1.48501 * 109.47502 * 330.00026 * 16 14 12 20 20 C 1.53002 * 109.47233 * 175.00027 * 3 2 1 21 21 H 1.09001 * 110.32644 * 302.25099 * 20 3 2 22 22 C 1.54479 * 110.37515 * 179.97438 * 20 3 2 23 23 C 1.54507 * 104.06157 * 217.18956 * 22 20 3 24 24 C 1.54472 * 104.06484 * 359.97438 * 23 22 20 25 25 O 1.44423 * 110.37338 * 64.61445 * 20 3 2 26 26 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 27 27 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 28 28 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 30 30 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 31 31 H 0.97002 * 120.00410 * 264.99761 * 5 3 2 32 32 H 1.09002 * 109.46880 * 299.99754 * 8 6 5 33 33 H 1.09003 * 109.46851 * 59.99965 * 8 6 5 34 34 H 1.09002 * 109.47281 * 299.99730 * 9 8 6 35 35 H 1.08997 * 109.47550 * 59.99777 * 9 8 6 36 36 H 1.09002 * 109.46903 * 300.00493 * 10 9 8 37 37 H 1.08997 * 109.47163 * 59.99439 * 10 9 8 38 38 H 1.09002 * 109.46949 * 299.99608 * 11 10 9 39 39 H 1.09001 * 109.47101 * 59.99534 * 11 10 9 40 40 H 0.96998 * 119.99742 * 179.97438 * 15 14 12 41 41 H 1.08998 * 110.50947 * 335.83324 * 22 20 3 42 42 H 1.08998 * 110.51023 * 98.40183 * 22 20 3 43 43 H 1.09005 * 110.50932 * 118.64374 * 23 22 20 44 44 H 1.08998 * 110.50930 * 241.21757 * 23 22 20 45 45 H 1.09004 * 110.37552 * 142.81144 * 24 23 22 46 46 H 1.09002 * 110.37470 * 265.15145 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6525 2.0974 -1.2519 6 6 0.4351 2.6643 -1.3671 7 8 -0.3396 2.6319 -0.4345 8 6 0.0366 3.3385 -2.6546 9 6 -1.3826 3.8941 -2.5214 10 6 -1.7875 4.5780 -3.8288 11 6 -3.2065 5.1342 -3.6953 12 6 -3.6054 5.8072 -4.9833 13 1 -2.9156 5.8358 -5.8138 14 6 -4.8510 6.3865 -5.1014 15 7 -5.1990 6.9744 -6.2252 16 14 -6.0443 6.3364 -3.6651 17 1 -5.8419 7.5346 -2.8115 18 1 -7.4374 6.3245 -4.1792 19 1 -5.8022 5.1105 -2.8629 20 6 3.5648 1.4445 0.1257 21 1 3.8705 0.9248 1.0338 22 6 4.1025 2.8926 0.1272 23 6 5.4227 2.8037 -0.6707 24 6 5.5267 1.3123 -1.0593 25 8 4.1658 0.8294 -1.0346 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.2720 2.1231 -1.9978 32 1 0.7280 4.1540 -2.8668 33 1 0.0680 2.6143 -3.4687 34 1 -2.0738 3.0783 -2.3094 35 1 -1.4145 4.6181 -1.7072 36 1 -1.0963 5.3937 -4.0413 37 1 -1.7557 3.8537 -4.6427 38 1 -3.8978 4.3188 -3.4827 39 1 -3.2378 5.8586 -2.8815 40 1 -6.0754 7.3816 -6.3084 41 1 3.4000 3.5614 -0.3701 42 1 4.2918 3.2287 1.1467 43 1 5.3727 3.4286 -1.5625 44 1 6.2666 3.0973 -0.0465 45 1 5.9473 1.2092 -2.0596 46 1 6.1350 0.7726 -0.3335 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588656819.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:44 Heat of formation + Delta-G solvation = -117.033034 kcal Electronic energy + Delta-G solvation = -22650.802084 eV Core-core repulsion = 19346.174374 eV Total energy + Delta-G solvation = -3304.627710 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.57644 -39.25693 -35.93140 -34.85921 -32.78047 -32.51915 -32.19194 -30.32207 -29.74930 -26.38474 -25.44228 -22.85046 -22.38335 -21.39044 -20.76957 -20.20765 -19.98247 -17.22096 -16.97626 -16.59722 -16.39070 -15.85404 -15.72636 -15.04194 -14.63780 -14.21126 -14.14338 -13.88073 -13.46198 -13.33723 -12.86960 -12.62471 -12.42786 -12.20227 -12.15155 -12.02630 -11.75249 -11.69761 -11.46108 -11.18074 -11.08504 -10.92775 -10.88610 -10.69794 -10.49342 -10.23893 -9.88930 -9.76215 -9.61238 -9.36146 -9.09089 -9.04279 -8.47215 -5.98480 -3.95739 2.74759 3.13008 3.37003 3.43847 3.44059 3.50312 4.06252 4.24859 4.47652 4.52146 4.57250 4.79145 4.80995 4.94921 4.98423 5.05971 5.20242 5.26499 5.29332 5.34746 5.37686 5.38242 5.42675 5.54111 5.56322 5.65041 5.77903 5.84967 5.91153 6.07789 6.09344 6.20370 6.30264 6.38079 6.44884 6.51743 6.72558 6.86611 7.02713 7.41385 7.52063 7.54180 7.87328 8.31350 8.60825 9.06736 9.65050 11.15111 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.027266 B = 0.002863 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.681007 B = 9778.622531 C =10351.915069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.130 4.130 3 C 0.153 3.847 4 H 0.098 0.902 5 N -0.725 5.725 6 C 0.512 3.488 7 O -0.533 6.533 8 C -0.140 4.140 9 C -0.105 4.105 10 C -0.103 4.103 11 C -0.015 4.015 12 C -0.519 4.519 13 H 0.071 0.929 14 C 0.064 3.936 15 N -0.907 5.907 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.264 1.264 20 C 0.067 3.933 21 H 0.081 0.919 22 C -0.154 4.154 23 C -0.156 4.156 24 C 0.044 3.956 25 O -0.367 6.367 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.403 0.597 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.015 0.985 39 H 0.011 0.989 40 H 0.262 0.738 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.036 -13.235 14.152 30.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.169 4.169 3 C 0.048 3.952 4 H 0.116 0.884 5 N -0.379 5.379 6 C 0.299 3.701 7 O -0.410 6.410 8 C -0.180 4.180 9 C -0.143 4.143 10 C -0.140 4.140 11 C -0.053 4.053 12 C -0.557 4.557 13 H 0.089 0.911 14 C -0.136 4.136 15 N -0.546 5.546 16 Si 0.707 3.293 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.189 1.189 20 C 0.009 3.991 21 H 0.098 0.902 22 C -0.192 4.192 23 C -0.194 4.194 24 C -0.033 4.033 25 O -0.285 6.285 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.238 0.762 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.034 0.966 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.111 0.889 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 23.217 -13.308 14.597 30.482 hybrid contribution -0.152 0.216 0.424 0.500 sum 23.064 -13.092 15.021 30.479 Atomic orbital electron populations 1.21816 0.94624 1.00579 1.03300 1.21891 0.97066 0.95568 1.02358 1.21042 0.91163 0.94232 0.88776 0.88409 1.46040 1.17224 1.58242 1.16390 1.21002 0.80909 0.77696 0.90445 1.90701 1.50847 1.58593 1.40823 1.21773 1.00481 1.00949 0.94756 1.21463 0.92840 1.00423 0.99534 1.21477 0.98986 0.98827 0.94750 1.19572 0.92513 0.95849 0.97317 1.21195 1.00735 1.34954 0.98797 0.91123 1.25044 0.98112 0.94808 0.95676 1.69923 1.21134 1.37929 1.25619 0.86769 0.80235 0.79151 0.83123 1.20336 1.21480 1.18877 1.23367 0.93059 0.92720 0.89959 0.90163 1.23009 0.97311 0.97343 1.01524 1.22941 0.97962 0.97461 1.00992 1.23418 0.84582 0.93005 1.02262 1.89149 1.24090 1.69298 1.46012 0.92266 0.92147 0.93671 0.91252 0.91628 0.76168 0.89201 0.89118 0.91838 0.91863 0.92941 0.92877 0.96637 0.97092 0.92838 0.89913 0.90398 0.90455 0.90567 0.88935 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.51 37.16 0.32 -1.39 16 2 C -0.13 -1.25 5.46 -26.73 -0.15 -1.39 16 3 C 0.15 1.41 2.11 -67.93 -0.14 1.27 16 4 H 0.10 1.02 7.58 -51.93 -0.39 0.63 16 5 N -0.73 -7.23 4.10 -53.80 -0.22 -7.45 16 6 C 0.51 6.67 6.40 -10.98 -0.07 6.60 16 7 O -0.53 -8.76 13.12 5.56 0.07 -8.69 16 8 C -0.14 -1.79 5.70 -27.88 -0.16 -1.95 16 9 C -0.10 -1.77 4.50 -26.73 -0.12 -1.89 16 10 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 11 C -0.02 -0.38 4.04 -27.89 -0.11 -0.49 16 12 C -0.52 -15.24 9.66 -34.44 -0.33 -15.57 16 13 H 0.07 2.20 7.99 -52.48 -0.42 1.79 16 14 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 15 N -0.91 -28.63 13.96 55.43 0.77 -27.86 16 16 Si 0.88 22.55 27.47 -169.99 -4.67 17.88 16 17 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 19 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 20 C 0.07 0.49 3.02 -25.95 -0.08 0.41 16 21 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 22 C -0.15 -0.99 6.53 -25.16 -0.16 -1.16 16 23 C -0.16 -0.82 7.09 -25.17 -0.18 -1.00 16 24 C 0.04 0.25 7.63 37.93 0.29 0.54 16 25 O -0.37 -2.98 10.36 -35.23 -0.37 -3.34 16 26 H 0.06 0.75 7.85 -51.93 -0.41 0.34 16 27 H 0.06 0.83 5.64 -51.93 -0.29 0.54 16 28 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.70 7.99 -51.93 -0.41 0.28 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.40 3.45 8.07 -40.82 -0.33 3.12 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 35 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 39 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 40 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 41 H 0.08 0.63 7.20 -51.93 -0.37 0.26 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 360.34 15.07 5.43 5.43 Total: -1.00 -33.39 360.34 -8.59 -41.98 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -8.48 Total: -1.57 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -1.13 Total: -16.38 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.55 Total: -35.31 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -0.29 Total: -12.03 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.67 Total: 17.88 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.39 -8.59 -41.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588656819.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.055 kcal (2) G-P(sol) polarization free energy of solvation -33.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds