Wall clock time and date at job start Tue Mar 31 2020 05:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47017 * 2 1 4 4 C 1.53002 * 109.47335 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.50798 * 55.09539 * 4 3 2 6 6 C 1.53704 * 109.48894 * 175.36296 * 4 3 2 7 7 N 1.47145 * 108.16392 * 172.39962 * 6 4 3 8 8 C 1.34777 * 120.98491 * 129.43467 * 7 6 4 9 9 O 1.21278 * 119.99854 * 359.71221 * 8 7 6 10 10 C 1.50703 * 120.00161 * 179.71914 * 8 7 6 11 11 C 1.53000 * 109.46912 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47060 * 179.97438 * 11 10 8 13 13 C 1.52992 * 109.47482 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47592 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00057 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00356 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99989 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00117 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47306 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47019 * 120.00329 * 18 16 14 21 21 H 1.48498 * 109.47326 * 240.00104 * 18 16 14 22 22 C 1.47157 * 118.03601 * 309.15732 * 7 6 4 23 23 C 1.53298 * 108.38088 * 50.78608 * 22 7 6 24 24 O 1.42958 * 109.22448 * 307.69997 * 23 22 7 25 25 H 1.08998 * 109.47120 * 60.00398 * 1 2 3 26 26 H 1.09004 * 109.46841 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46967 * 299.99837 * 1 2 3 28 28 H 1.09005 * 109.46693 * 240.00191 * 2 1 3 29 29 H 1.09000 * 109.47190 * 120.00376 * 2 1 3 30 30 H 1.08997 * 109.47119 * 60.00257 * 3 2 1 31 31 H 1.09006 * 109.47069 * 299.99997 * 3 2 1 32 32 H 1.09003 * 109.83620 * 52.71827 * 6 4 3 33 33 H 1.09000 * 109.74522 * 292.02666 * 6 4 3 34 34 H 1.09001 * 109.46980 * 59.99654 * 10 8 7 35 35 H 1.08992 * 109.47158 * 299.99760 * 10 8 7 36 36 H 1.09002 * 109.47398 * 300.00078 * 11 10 8 37 37 H 1.09001 * 109.47194 * 60.00258 * 11 10 8 38 38 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 39 39 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 40 40 H 1.09002 * 109.47103 * 300.00247 * 13 12 11 41 41 H 1.09001 * 109.47066 * 60.00169 * 13 12 11 42 42 H 0.96996 * 119.99885 * 179.97438 * 17 16 14 43 43 H 1.08999 * 109.68071 * 170.50684 * 22 7 6 44 44 H 1.08997 * 109.68280 * 291.06334 * 22 7 6 45 45 H 1.09001 * 109.51321 * 67.62181 * 23 22 7 46 46 H 1.09001 * 109.51130 * 187.77124 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4426 -0.0006 5 1 3.9337 0.8548 -0.8435 6 6 4.0827 2.8868 -0.1178 7 7 5.5423 2.8720 0.0683 8 6 6.3602 3.4826 -0.8118 9 8 5.8961 4.0510 -1.7774 10 6 7.8515 3.4590 -0.5961 11 6 8.5429 4.2182 -1.7304 12 6 10.0569 4.1948 -1.5112 13 6 10.7483 4.9545 -2.6450 14 6 12.2395 4.9320 -2.4288 15 1 12.6529 4.4261 -1.5688 16 6 13.0762 5.5564 -3.3293 17 7 12.5729 6.1721 -4.3768 18 14 14.9246 5.5291 -3.0608 19 1 15.2333 4.7774 -1.8179 20 1 15.5829 4.8669 -4.2156 21 1 15.4273 6.9208 -2.9358 22 6 6.0822 2.1761 1.2472 23 6 5.4717 0.7709 1.3006 24 8 4.0481 0.8728 1.2203 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.6209 3.5067 0.6507 33 1 3.8424 3.2841 -1.1040 34 1 8.2007 2.4265 -0.5847 35 1 8.0885 3.9332 0.3562 36 1 8.3059 3.7437 -2.6827 37 1 8.1938 5.2508 -1.7422 38 1 10.2935 4.6697 -0.5590 39 1 10.4064 3.1625 -1.4991 40 1 10.5117 4.4801 -3.5974 41 1 10.3988 5.9869 -2.6567 42 1 13.1616 6.6117 -5.0102 43 1 7.1666 2.1024 1.1652 44 1 5.8183 2.7256 2.1507 45 1 5.8424 0.1808 0.4625 46 1 5.7500 0.2885 2.2377 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588660544.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:34 Heat of formation + Delta-G solvation = -117.092375 kcal Electronic energy + Delta-G solvation = -22190.825725 eV Core-core repulsion = 18886.195442 eV Total energy + Delta-G solvation = -3304.630284 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.55812 -38.70969 -35.59047 -34.99715 -34.72120 -32.69072 -31.81414 -29.84005 -28.63350 -26.91836 -25.19387 -23.79716 -22.67145 -21.57740 -21.26208 -20.03489 -19.08366 -17.22006 -17.07278 -16.22714 -16.01608 -15.97957 -15.38378 -15.22049 -14.93616 -14.47239 -14.43939 -14.01382 -13.40859 -13.32265 -13.25318 -12.70842 -12.50284 -12.33969 -12.16424 -11.84451 -11.65565 -11.58269 -11.47669 -11.38057 -11.02981 -11.00284 -10.83937 -10.55477 -10.48575 -10.43088 -10.39430 -9.79136 -9.62053 -9.22993 -8.97530 -8.74860 -8.30964 -5.95495 -3.97995 2.62810 2.70946 3.32858 3.34664 3.40033 3.43911 4.20865 4.43402 4.48839 4.56151 4.61647 4.65944 4.73269 4.81810 4.92542 4.99558 5.18135 5.23289 5.26309 5.27710 5.32428 5.39436 5.39998 5.46373 5.47917 5.51749 5.63378 5.75973 5.81670 5.88476 6.00073 6.11860 6.17667 6.30268 6.53570 6.79158 6.82713 6.99865 7.17225 7.23328 7.74149 7.89734 8.05880 8.14102 8.47658 9.09931 9.65679 11.15855 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.042862 B = 0.002359 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.106711 B =11865.957467 C =12214.597925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.111 4.111 4 C 0.078 3.922 5 H 0.064 0.936 6 C 0.082 3.918 7 N -0.625 5.625 8 C 0.516 3.484 9 O -0.532 6.532 10 C -0.137 4.137 11 C -0.103 4.103 12 C -0.110 4.110 13 C 0.019 3.981 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.054 3.946 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.072 3.928 23 C 0.048 3.952 24 O -0.375 6.375 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.046 0.954 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.259 0.741 43 H 0.100 0.900 44 H 0.077 0.923 45 H 0.056 0.944 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.756 -12.995 13.531 28.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.148 4.148 4 C 0.020 3.980 5 H 0.082 0.918 6 C -0.041 4.041 7 N -0.361 5.361 8 C 0.306 3.694 9 O -0.408 6.408 10 C -0.177 4.177 11 C -0.141 4.141 12 C -0.147 4.147 13 C -0.018 4.018 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.147 4.147 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.051 4.051 23 C -0.030 4.030 24 O -0.294 6.294 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.118 0.882 44 H 0.095 0.905 45 H 0.075 0.925 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -22.063 -12.631 12.983 28.546 hybrid contribution 1.292 0.122 -0.023 1.298 sum -20.770 -12.509 12.960 27.493 Atomic orbital electron populations 1.21779 0.95809 1.01641 1.01781 1.21465 0.95678 0.96240 1.02518 1.21610 0.91862 0.98204 1.03167 1.22629 0.95089 0.92896 0.87422 0.91837 1.22348 0.80460 0.97119 1.04132 1.48262 1.06532 1.55714 1.25627 1.21161 0.89722 0.77094 0.81458 1.90697 1.77585 1.43199 1.29319 1.21824 0.89943 1.03254 1.02675 1.21468 0.96269 1.00065 0.96344 1.21646 0.91905 1.00392 1.00807 1.19101 0.94530 0.95292 0.92864 1.21318 0.91969 1.33853 1.08641 0.92696 1.25054 0.98781 0.95533 0.95289 1.69987 1.34854 1.35771 1.12829 0.86551 0.85790 0.77677 0.78051 1.19786 1.21060 1.21049 1.22458 1.00301 0.93673 0.88713 1.22975 0.81424 0.95518 1.03066 1.87947 1.20671 1.82584 1.38205 0.92782 0.92763 0.92709 0.92188 0.91191 0.90799 0.90215 0.90913 0.88152 0.89178 0.89085 0.91799 0.91771 0.93462 0.93484 0.96585 0.96574 0.93098 0.88226 0.90478 0.92525 0.87513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.83 5.83 -26.73 -0.16 -0.98 16 3 C -0.11 -0.79 4.93 -26.73 -0.13 -0.92 16 4 C 0.08 0.69 2.79 -26.36 -0.07 0.61 16 5 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 6 C 0.08 0.85 5.95 -3.32 -0.02 0.83 16 7 N -0.63 -7.07 3.01 -172.03 -0.52 -7.59 16 8 C 0.52 7.50 7.71 -10.98 -0.08 7.42 16 9 O -0.53 -9.87 15.45 5.56 0.09 -9.79 16 10 C -0.14 -1.85 4.07 -27.88 -0.11 -1.97 16 11 C -0.10 -1.87 4.50 -26.73 -0.12 -1.99 16 12 C -0.11 -2.27 5.15 -26.74 -0.14 -2.40 16 13 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 14 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 15 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 16 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -27.60 13.29 55.43 0.74 -26.87 16 18 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 C 0.07 0.58 6.54 -3.53 -0.02 0.55 16 23 C 0.05 0.35 6.98 37.31 0.26 0.61 16 24 O -0.38 -3.43 9.92 -35.23 -0.35 -3.78 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.53 7.83 -51.93 -0.41 0.12 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 1.17 7.08 -51.93 -0.37 0.80 16 34 H 0.09 1.04 7.66 -51.93 -0.40 0.64 16 35 H 0.09 1.06 8.01 -51.93 -0.42 0.65 16 36 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 37 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 43 H 0.10 0.68 6.05 -51.93 -0.31 0.36 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 367.47 15.07 5.54 5.54 Total: -1.00 -33.95 367.47 -8.94 -42.88 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -8.63 Total: -5.10 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -0.78 Total: -12.22 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.22 Total: -34.46 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.26 Total: -13.56 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.95 -8.94 -42.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588660544.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.209 kcal (2) G-P(sol) polarization free energy of solvation -33.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds