Wall clock time and date at job start Tue Mar 31 2020 05:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47017 * 2 1 4 4 C 1.53002 * 109.47335 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.50798 * 55.09539 * 4 3 2 6 6 C 1.53704 * 109.48894 * 175.36296 * 4 3 2 7 7 N 1.47145 * 108.16392 * 172.39962 * 6 4 3 8 8 C 1.34777 * 120.98491 * 129.43467 * 7 6 4 9 9 O 1.21278 * 119.99854 * 359.71221 * 8 7 6 10 10 C 1.50703 * 120.00161 * 179.71914 * 8 7 6 11 11 C 1.53000 * 109.46912 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47060 * 179.97438 * 11 10 8 13 13 C 1.52992 * 109.47482 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47592 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00057 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00356 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99989 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00117 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47306 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47019 * 120.00329 * 18 16 14 21 21 H 1.48498 * 109.47326 * 240.00104 * 18 16 14 22 22 C 1.47157 * 118.03601 * 309.15732 * 7 6 4 23 23 C 1.53298 * 108.38088 * 50.78608 * 22 7 6 24 24 O 1.42958 * 109.22448 * 307.69997 * 23 22 7 25 25 H 1.08998 * 109.47120 * 60.00398 * 1 2 3 26 26 H 1.09004 * 109.46841 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46967 * 299.99837 * 1 2 3 28 28 H 1.09005 * 109.46693 * 240.00191 * 2 1 3 29 29 H 1.09000 * 109.47190 * 120.00376 * 2 1 3 30 30 H 1.08997 * 109.47119 * 60.00257 * 3 2 1 31 31 H 1.09006 * 109.47069 * 299.99997 * 3 2 1 32 32 H 1.09003 * 109.83620 * 52.71827 * 6 4 3 33 33 H 1.09000 * 109.74522 * 292.02666 * 6 4 3 34 34 H 1.09001 * 109.46980 * 59.99654 * 10 8 7 35 35 H 1.08992 * 109.47158 * 299.99760 * 10 8 7 36 36 H 1.09002 * 109.47398 * 300.00078 * 11 10 8 37 37 H 1.09001 * 109.47194 * 60.00258 * 11 10 8 38 38 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 39 39 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 40 40 H 1.09002 * 109.47103 * 300.00247 * 13 12 11 41 41 H 1.09001 * 109.47066 * 60.00169 * 13 12 11 42 42 H 0.96996 * 119.99885 * 179.97438 * 17 16 14 43 43 H 1.08999 * 109.68071 * 170.50684 * 22 7 6 44 44 H 1.08997 * 109.68280 * 291.06334 * 22 7 6 45 45 H 1.09001 * 109.51321 * 67.62181 * 23 22 7 46 46 H 1.09001 * 109.51130 * 187.77124 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4426 -0.0006 5 1 3.9337 0.8548 -0.8435 6 6 4.0827 2.8868 -0.1178 7 7 5.5423 2.8720 0.0683 8 6 6.3602 3.4826 -0.8118 9 8 5.8961 4.0510 -1.7774 10 6 7.8515 3.4590 -0.5961 11 6 8.5429 4.2182 -1.7304 12 6 10.0569 4.1948 -1.5112 13 6 10.7483 4.9545 -2.6450 14 6 12.2395 4.9320 -2.4288 15 1 12.6529 4.4261 -1.5688 16 6 13.0762 5.5564 -3.3293 17 7 12.5729 6.1721 -4.3768 18 14 14.9246 5.5291 -3.0608 19 1 15.2333 4.7774 -1.8179 20 1 15.5829 4.8669 -4.2156 21 1 15.4273 6.9208 -2.9358 22 6 6.0822 2.1761 1.2472 23 6 5.4717 0.7709 1.3006 24 8 4.0481 0.8728 1.2203 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.6209 3.5067 0.6507 33 1 3.8424 3.2841 -1.1040 34 1 8.2007 2.4265 -0.5847 35 1 8.0885 3.9332 0.3562 36 1 8.3059 3.7437 -2.6827 37 1 8.1938 5.2508 -1.7422 38 1 10.2935 4.6697 -0.5590 39 1 10.4064 3.1625 -1.4991 40 1 10.5117 4.4801 -3.5974 41 1 10.3988 5.9869 -2.6567 42 1 13.1616 6.6117 -5.0102 43 1 7.1666 2.1024 1.1652 44 1 5.8183 2.7256 2.1507 45 1 5.8424 0.1808 0.4625 46 1 5.7500 0.2885 2.2377 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588660544.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:34 Heat of formation + Delta-G solvation = -137.684844 kcal Electronic energy + Delta-G solvation = -22191.718682 eV Core-core repulsion = 18886.195442 eV Total energy + Delta-G solvation = -3305.523240 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.46916 -39.63823 -36.68205 -36.29146 -35.55251 -34.64049 -32.60002 -31.43649 -29.39150 -28.12065 -26.64347 -24.45658 -24.18364 -22.54310 -21.92419 -21.72526 -20.04588 -18.46465 -18.17453 -17.75118 -17.10298 -16.95005 -16.48056 -16.17864 -15.98263 -15.64511 -15.48914 -14.97141 -14.56725 -14.53904 -14.01567 -13.88813 -13.68680 -13.58294 -13.41153 -13.01726 -12.90740 -12.84815 -12.45285 -12.30552 -12.17368 -12.15669 -12.07594 -11.94415 -11.64500 -11.49027 -11.39786 -11.33572 -11.18536 -11.11027 -10.74383 -10.56172 -9.62041 -8.19128 -6.31281 1.40386 1.41333 1.53164 1.54816 1.81565 2.41612 2.73071 3.13644 3.46210 3.59385 3.88921 3.94001 3.98848 4.01540 4.09089 4.16255 4.22189 4.32489 4.40332 4.44145 4.61271 4.63934 4.66230 4.70739 4.77194 4.79831 4.84114 4.89343 4.90497 4.96184 5.05555 5.16218 5.25799 5.30679 5.34341 5.35737 5.39450 5.48054 5.56171 5.77222 5.87599 6.14616 6.24011 6.25545 6.87495 7.07274 7.38406 8.93336 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.042862 B = 0.002359 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.106711 B =11865.957467 C =12214.597925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.108 4.108 4 C 0.086 3.914 5 H 0.054 0.946 6 C 0.079 3.921 7 N -0.620 5.620 8 C 0.511 3.489 9 O -0.586 6.586 10 C -0.126 4.126 11 C -0.095 4.095 12 C -0.095 4.095 13 C 0.018 3.982 14 C -0.540 4.540 15 H 0.067 0.933 16 C -0.009 4.009 17 N -0.938 5.938 18 Si 0.971 3.029 19 H -0.256 1.256 20 H -0.279 1.279 21 H -0.279 1.279 22 C 0.066 3.934 23 C 0.045 3.955 24 O -0.384 6.384 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.062 0.938 39 H 0.062 0.938 40 H -0.016 1.016 41 H -0.016 1.016 42 H 0.263 0.737 43 H 0.118 0.882 44 H 0.091 0.909 45 H 0.054 0.946 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.079 -14.565 16.142 30.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.146 4.146 4 C 0.027 3.973 5 H 0.072 0.928 6 C -0.043 4.043 7 N -0.354 5.354 8 C 0.302 3.698 9 O -0.466 6.466 10 C -0.165 4.165 11 C -0.134 4.134 12 C -0.132 4.132 13 C -0.020 4.020 14 C -0.578 4.578 15 H 0.085 0.915 16 C -0.206 4.206 17 N -0.579 5.579 18 Si 0.795 3.205 19 H -0.180 1.180 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.056 4.056 23 C -0.032 4.032 24 O -0.303 6.303 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.003 0.997 41 H 0.002 0.998 42 H 0.071 0.929 43 H 0.136 0.864 44 H 0.109 0.891 45 H 0.073 0.927 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -21.402 -14.239 15.652 30.096 hybrid contribution 1.034 0.606 -0.829 1.457 sum -20.368 -13.634 14.823 28.644 Atomic orbital electron populations 1.21767 0.94984 1.02051 1.02059 1.21427 0.96374 0.95767 1.02035 1.21613 0.90719 0.98621 1.03605 1.22543 0.96013 0.91497 0.87234 0.92825 1.22428 0.80119 0.98377 1.03412 1.48329 1.06743 1.54558 1.25742 1.21320 0.90397 0.76847 0.81247 1.90681 1.78419 1.45822 1.31689 1.21707 0.88849 1.04396 1.01579 1.21252 0.95065 0.99476 0.97573 1.21440 0.92825 1.00249 0.98698 1.19067 0.94844 0.94079 0.93965 1.21785 0.93034 1.33884 1.09070 0.91455 1.26117 1.04689 0.94934 0.94844 1.70143 1.37049 1.36720 1.13966 0.85317 0.78617 0.77985 0.78610 1.17995 1.20520 1.20521 1.22780 1.01430 0.93826 0.87575 1.23169 0.80390 0.95164 1.04492 1.87947 1.21882 1.82435 1.37990 0.92536 0.92313 0.92405 0.92488 0.91823 0.90415 0.89730 0.89950 0.90083 0.86243 0.86271 0.93929 0.93961 0.91945 0.91903 0.99744 0.99761 0.92877 0.86391 0.89101 0.92734 0.84733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 71.98 0.71 -0.87 16 2 C -0.12 -1.49 5.83 30.60 0.18 -1.31 16 3 C -0.11 -1.44 4.93 30.59 0.15 -1.28 16 4 C 0.09 1.43 2.79 30.83 0.09 1.52 16 5 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 6 C 0.08 1.59 5.95 86.49 0.52 2.11 16 7 N -0.62 -13.12 3.01 -816.56 -2.46 -15.58 16 8 C 0.51 14.56 7.71 87.66 0.68 15.24 16 9 O -0.59 -22.51 15.45 -3.02 -0.05 -22.55 16 10 C -0.13 -3.14 4.07 29.85 0.12 -3.02 16 11 C -0.10 -3.47 4.50 30.59 0.14 -3.33 16 12 C -0.09 -3.84 5.15 30.59 0.16 -3.68 16 13 C 0.02 0.97 4.97 29.84 0.15 1.12 16 14 C -0.54 -31.29 9.11 25.60 0.23 -31.05 16 15 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 16 C -0.01 -0.52 5.46 84.65 0.46 -0.06 16 17 N -0.94 -59.24 13.29 21.45 0.28 -58.95 16 18 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 19 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 C 0.07 0.84 6.54 86.35 0.56 1.41 16 23 C 0.04 0.53 6.98 72.08 0.50 1.03 16 24 O -0.38 -6.22 9.92 -148.98 -1.48 -7.69 16 25 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.06 0.89 7.83 -2.39 -0.02 0.87 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.08 1.96 7.08 -2.39 -0.02 1.94 16 34 H 0.12 2.32 7.66 -2.39 -0.02 2.30 16 35 H 0.12 2.35 8.01 -2.39 -0.02 2.33 16 36 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 37 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 38 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.06 2.35 8.14 -2.39 -0.02 2.34 16 40 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 41 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 42 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 43 H 0.12 1.10 6.05 -2.39 -0.01 1.08 16 44 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -75.99 367.47 3.88 -72.11 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 0.91 Total: 8.03 kcal Atomic # 6 Polarization: -26.85 SS G_CDS: 4.65 Total: -22.20 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -2.18 Total: -74.53 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -1.52 Total: -30.25 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -75.99 3.88 -72.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588660544.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.578 kcal (2) G-P(sol) polarization free energy of solvation -75.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds