Wall clock time and date at job start Tue Mar 31 2020 05:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47248 * 2 1 4 4 O 1.42894 * 109.47255 * 239.99625 * 2 1 3 5 5 C 1.53003 * 109.46726 * 119.99621 * 2 1 3 6 6 H 1.09002 * 109.87241 * 173.21119 * 5 2 1 7 7 C 1.54323 * 110.01308 * 294.31167 * 5 2 1 8 8 C 1.55157 * 102.94188 * 141.68384 * 7 5 2 9 9 C 1.55128 * 101.48659 * 324.33303 * 8 7 5 10 10 N 1.47024 * 109.88364 * 52.20014 * 5 2 1 11 11 C 1.34777 * 125.64866 * 61.44606 * 10 5 2 12 12 O 1.21289 * 120.00006 * 357.52648 * 11 10 5 13 13 C 1.50700 * 120.00052 * 177.52201 * 11 10 5 14 14 C 1.53001 * 109.47088 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.46844 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.47020 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47381 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00095 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00293 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99743 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00131 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47200 * 179.97438 * 21 19 17 23 23 H 1.48504 * 109.47176 * 299.99423 * 21 19 17 24 24 H 1.48499 * 109.47452 * 59.99474 * 21 19 17 25 25 H 1.09001 * 109.47213 * 300.00672 * 1 2 3 26 26 H 1.08999 * 109.46674 * 60.00021 * 1 2 3 27 27 H 1.08994 * 109.47449 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46847 * 174.10093 * 3 2 1 29 29 H 1.08994 * 109.46949 * 294.10213 * 3 2 1 30 30 H 1.08995 * 109.47071 * 54.09873 * 3 2 1 31 31 H 0.96702 * 114.00091 * 322.87701 * 4 2 1 32 32 H 1.09000 * 110.71880 * 260.04347 * 7 5 2 33 33 H 1.08999 * 110.71807 * 23.32233 * 7 5 2 34 34 H 1.09003 * 111.00434 * 82.56950 * 8 7 5 35 35 H 1.08997 * 111.00457 * 206.42400 * 8 7 5 36 36 H 1.08997 * 110.49898 * 278.45863 * 9 8 7 37 37 H 1.08997 * 110.34508 * 156.05424 * 9 8 7 38 38 H 1.09002 * 109.46545 * 60.00198 * 13 11 10 39 39 H 1.08995 * 109.47134 * 300.00372 * 13 11 10 40 40 H 1.08997 * 109.46663 * 60.00674 * 14 13 11 41 41 H 1.08995 * 109.47578 * 300.00273 * 14 13 11 42 42 H 1.08997 * 109.47090 * 60.00752 * 15 14 13 43 43 H 1.08995 * 109.47107 * 300.00379 * 15 14 13 44 44 H 1.09005 * 109.47300 * 59.99551 * 16 15 14 45 45 H 1.09005 * 109.47068 * 300.00514 * 16 15 14 46 46 H 0.97005 * 119.99491 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2493 6 1 3.1231 -0.8312 1.1975 7 6 1.6531 0.0748 2.5136 8 6 1.2896 -1.0406 3.5289 9 6 0.6257 -2.0951 2.6048 10 7 1.4076 -2.0442 1.3561 11 6 1.5195 -3.0430 0.4581 12 8 2.1513 -2.8725 -0.5631 13 6 0.8597 -4.3718 0.7229 14 6 1.1389 -5.3213 -0.4439 15 6 0.4684 -6.6702 -0.1752 16 6 0.7481 -7.6199 -1.3417 17 6 0.0872 -8.9483 -1.0775 18 1 -0.4755 -9.1001 -0.1683 19 6 0.2020 -9.9701 -1.9959 20 7 0.8877 -9.7854 -3.1029 21 14 -0.6178 -11.6164 -1.6687 22 1 -0.3462 -12.5383 -2.8009 23 1 -0.0758 -12.1987 -0.4148 24 1 -2.0833 -11.4210 -1.5307 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1249 1.4442 0.1056 29 1 1.7655 1.9249 -0.9380 30 1 1.5930 1.9859 0.8324 31 1 1.4734 -1.4383 -1.4245 32 1 2.4978 0.6627 2.8726 33 1 0.7921 0.7141 2.3183 34 1 2.1841 -1.4418 4.0055 35 1 0.5822 -0.6757 4.2736 36 1 -0.4145 -1.8327 2.4119 37 1 0.6910 -3.0865 3.0531 38 1 -0.2160 -4.2291 0.8255 39 1 1.2590 -4.7987 1.6429 40 1 2.2145 -5.4640 -0.5468 41 1 0.7393 -4.8942 -1.3636 42 1 -0.6072 -6.5272 -0.0726 43 1 0.8676 -7.0975 0.7445 44 1 1.8238 -7.7628 -1.4441 45 1 0.3492 -7.1927 -2.2618 46 1 0.9681 -10.5043 -3.7492 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588665157.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:36 Heat of formation + Delta-G solvation = -108.592240 kcal Electronic energy + Delta-G solvation = -23242.524444 eV Core-core repulsion = 19938.262754 eV Total energy + Delta-G solvation = -3304.261690 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.86912 -38.17056 -36.70921 -34.87066 -32.75456 -32.46844 -31.61394 -29.71364 -28.42525 -27.51538 -25.78575 -23.95724 -22.20838 -22.11380 -20.20877 -19.89420 -18.65497 -17.58197 -17.02748 -16.18896 -16.11368 -15.61163 -15.24042 -14.72206 -14.44125 -14.16608 -13.89383 -13.63616 -13.22090 -12.97360 -12.56922 -12.50555 -12.40752 -12.31760 -12.26124 -11.89816 -11.73900 -11.72783 -11.58900 -11.44909 -11.21834 -10.96785 -10.70334 -10.52672 -10.50510 -10.39649 -10.04100 -9.67942 -9.60275 -9.20903 -8.98117 -8.64953 -8.29153 -5.94011 -3.96706 2.61554 2.83568 3.35851 3.40299 3.42426 4.05391 4.16224 4.33390 4.49337 4.50430 4.66504 4.76264 4.82464 4.87977 5.00369 5.13522 5.25714 5.30796 5.31576 5.36347 5.40278 5.41240 5.43681 5.50776 5.59845 5.70348 5.74288 5.81884 5.88680 5.96664 5.98414 6.13895 6.20674 6.32583 6.55188 6.84250 7.01883 7.20663 7.40646 7.74906 7.87384 7.91278 8.07381 8.31292 8.48959 9.10832 9.66825 11.17273 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.031978 B = 0.002977 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.404768 B = 9403.665712 C = 9945.604183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.118 3.882 3 C -0.140 4.140 4 O -0.551 6.551 5 C 0.115 3.885 6 H 0.079 0.921 7 C -0.129 4.129 8 C -0.133 4.133 9 C 0.097 3.903 10 N -0.620 5.620 11 C 0.523 3.477 12 O -0.517 6.517 13 C -0.134 4.134 14 C -0.103 4.103 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.521 4.521 18 H 0.053 0.947 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.892 3.108 22 H -0.287 1.287 23 H -0.277 1.277 24 H -0.277 1.277 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.382 0.618 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.227 23.800 14.584 27.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.076 3.924 3 C -0.197 4.197 4 O -0.365 6.365 5 C 0.012 3.988 6 H 0.097 0.903 7 C -0.167 4.167 8 C -0.171 4.171 9 C -0.026 4.026 10 N -0.356 5.356 11 C 0.313 3.687 12 O -0.394 6.394 13 C -0.174 4.174 14 C -0.141 4.141 15 C -0.147 4.147 16 C -0.017 4.017 17 C -0.560 4.560 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.213 1.213 23 H -0.203 1.203 24 H -0.203 1.203 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.239 0.761 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.386 24.147 13.813 27.822 hybrid contribution -0.908 -1.405 0.259 1.693 sum -1.294 22.742 14.072 26.775 Atomic orbital electron populations 1.22542 0.95995 1.02571 1.02488 1.21405 0.92534 0.92524 0.85939 1.21805 1.01885 0.93700 1.02345 1.86535 1.58267 1.47980 1.43764 1.22286 0.98346 0.82883 0.95319 0.90254 1.22774 1.02451 0.97552 0.93890 1.22821 1.01405 0.95669 0.97236 1.22402 0.95310 1.00493 0.84381 1.48749 1.50549 1.13669 1.22587 1.20930 0.80220 0.85154 0.82372 1.90560 1.41339 1.81414 1.26037 1.21798 1.01191 0.91962 1.02424 1.21468 1.01887 0.94893 0.95883 1.21644 0.98622 0.93696 1.00780 1.19086 0.97022 0.92947 0.92602 1.21246 1.32489 0.97471 1.04770 0.92837 1.25040 0.95496 0.98800 0.95212 1.69971 1.41067 1.32937 1.09468 0.86673 0.79902 0.83809 0.77674 1.21307 1.20293 1.20298 0.91617 0.91897 0.92261 0.91958 0.91763 0.91436 0.76119 0.89964 0.90071 0.90428 0.89763 0.91251 0.90170 0.89349 0.89253 0.91696 0.91774 0.93538 0.93534 0.96584 0.96596 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 8.16 37.16 0.30 -1.34 16 2 C 0.12 1.28 0.94 -90.62 -0.08 1.19 16 3 C -0.14 -1.21 8.38 37.16 0.31 -0.90 16 4 O -0.55 -8.39 11.54 -59.43 -0.69 -9.07 16 5 C 0.12 1.16 2.58 -66.95 -0.17 0.99 16 6 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 7 C -0.13 -0.80 5.25 -24.90 -0.13 -0.93 16 8 C -0.13 -0.73 7.10 -24.46 -0.17 -0.91 16 9 C 0.10 0.71 6.73 -2.41 -0.02 0.69 16 10 N -0.62 -6.61 2.07 -162.88 -0.34 -6.95 16 11 C 0.52 7.28 7.20 -10.99 -0.08 7.20 16 12 O -0.52 -9.07 12.07 -18.65 -0.23 -9.30 16 13 C -0.13 -1.79 4.66 -27.88 -0.13 -1.92 16 14 C -0.10 -1.84 4.50 -26.73 -0.12 -1.96 16 15 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 16 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 17 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -27.68 13.29 55.43 0.74 -26.95 16 21 Si 0.89 22.00 29.54 -169.99 -5.02 16.97 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 25 H 0.06 0.46 6.41 -51.93 -0.33 0.13 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.61 7.20 -51.93 -0.37 0.24 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.41 6.93 -51.93 -0.36 0.05 16 31 H 0.38 6.07 5.83 45.54 0.27 6.34 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.43 5.52 -51.93 -0.29 0.14 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.54 7.47 -51.93 -0.39 0.15 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.09 1.07 7.90 -51.93 -0.41 0.66 16 40 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 41 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 355.38 15.07 5.36 5.36 Total: -1.00 -33.73 355.38 -8.92 -42.65 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -7.77 Total: 1.04 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -0.98 Total: -13.76 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.40 Total: -33.89 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.91 Total: -18.37 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.73 -8.92 -42.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588665157.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.944 kcal (2) G-P(sol) polarization free energy of solvation -33.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds