Wall clock time and date at job start Tue Mar 31 2020 05:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46854 * 2 1 4 4 O 1.42900 * 109.46871 * 239.99961 * 2 1 3 5 5 C 1.52992 * 109.47008 * 119.99751 * 2 1 3 6 6 H 1.08999 * 109.87583 * 65.25288 * 5 2 1 7 7 C 1.54330 * 109.88603 * 304.07800 * 5 2 1 8 8 C 1.55160 * 102.94024 * 218.38904 * 7 5 2 9 9 C 1.54693 * 101.67801 * 35.33523 * 8 7 5 10 10 N 1.47021 * 109.88344 * 186.26877 * 5 2 1 11 11 C 1.34779 * 125.64724 * 298.32143 * 10 5 2 12 12 O 1.21279 * 119.99838 * 354.63187 * 11 10 5 13 13 C 1.50698 * 119.99912 * 174.62730 * 11 10 5 14 14 C 1.53008 * 109.47090 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47335 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47317 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47073 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00124 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99862 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00277 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00132 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47205 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47498 * 119.99601 * 21 19 17 24 24 H 1.48500 * 109.47021 * 240.00052 * 21 19 17 25 25 H 1.09000 * 109.47112 * 305.27897 * 1 2 3 26 26 H 1.08998 * 109.47075 * 65.27759 * 1 2 3 27 27 H 1.08991 * 109.47337 * 185.27996 * 1 2 3 28 28 H 1.09000 * 109.46757 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47660 * 299.99676 * 3 2 1 30 30 H 1.09003 * 109.47721 * 60.00080 * 3 2 1 31 31 H 0.96697 * 113.99362 * 161.82342 * 4 2 1 32 32 H 1.09003 * 110.71527 * 336.75350 * 7 5 2 33 33 H 1.08993 * 110.71875 * 100.02713 * 7 5 2 34 34 H 1.09001 * 111.00129 * 153.57074 * 8 7 5 35 35 H 1.08999 * 111.00530 * 277.42681 * 8 7 5 36 36 H 1.08999 * 110.38800 * 204.36055 * 9 8 7 37 37 H 1.08997 * 110.23771 * 82.11149 * 9 8 7 38 38 H 1.09001 * 109.47071 * 60.00653 * 13 11 10 39 39 H 1.09002 * 109.47477 * 299.99852 * 13 11 10 40 40 H 1.09002 * 109.46543 * 300.00061 * 14 13 11 41 41 H 1.08995 * 109.47087 * 59.99803 * 14 13 11 42 42 H 1.09004 * 109.46888 * 299.99901 * 15 14 13 43 43 H 1.08999 * 109.47126 * 59.99313 * 15 14 13 44 44 H 1.09002 * 109.46574 * 299.99813 * 16 15 14 45 45 H 1.09001 * 109.46913 * 59.99964 * 16 15 14 46 46 H 0.96999 * 120.00187 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7212 1.2492 6 1 1.7590 -1.7736 1.2102 7 6 1.4483 -0.0631 2.5136 8 6 2.6329 -0.1066 3.5147 9 6 3.8429 0.1207 2.5781 10 7 3.5024 -0.5971 1.3363 11 6 4.3857 -1.0670 0.4332 12 8 3.9989 -1.7337 -0.5032 13 6 5.8538 -0.7638 0.5869 14 6 6.6309 -1.4089 -0.5625 15 6 8.1215 -1.1017 -0.4061 16 6 8.8986 -1.7473 -1.5550 17 6 10.3668 -1.4441 -1.4013 18 1 10.7112 -0.8506 -0.5672 19 6 11.2704 -1.9252 -2.3248 20 7 10.8512 -2.6491 -3.3396 21 14 13.0904 -1.5500 -2.1339 22 1 13.3006 -0.7236 -0.9181 23 1 13.8471 -2.8213 -2.0057 24 1 13.5702 -0.8064 -3.3264 25 1 -0.3633 0.5935 0.8389 26 1 -0.3633 0.4298 -0.9335 27 1 -0.3633 -1.0232 0.0946 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 2.9287 -0.4805 -1.3834 32 1 1.1528 0.9662 2.3102 33 1 0.6041 -0.6407 2.8898 34 1 2.5514 0.6927 4.2514 35 1 2.6974 -1.0796 4.0017 36 1 4.7486 -0.2945 3.0202 37 1 3.9706 1.1846 2.3785 38 1 6.2100 -1.1638 1.5363 39 1 6.0061 0.3154 0.5673 40 1 6.4788 -2.4881 -0.5432 41 1 6.2747 -1.0086 -1.5116 42 1 8.2740 -0.0225 -0.4250 43 1 8.4774 -1.5022 0.5431 44 1 8.7461 -2.8264 -1.5356 45 1 8.5428 -1.3470 -2.5044 46 1 11.4870 -2.9879 -3.9892 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588665159.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:39 Heat of formation + Delta-G solvation = -109.900890 kcal Electronic energy + Delta-G solvation = -23249.045024 eV Core-core repulsion = 19944.726586 eV Total energy + Delta-G solvation = -3304.318437 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.89115 -38.19768 -36.73292 -34.87692 -32.79096 -32.49458 -31.62377 -29.71874 -28.43201 -27.54055 -25.79595 -23.96547 -22.19986 -22.11435 -20.21108 -19.88500 -18.74967 -17.56841 -17.03892 -16.19579 -16.12730 -15.58946 -15.26570 -14.76042 -14.43238 -14.16639 -13.83719 -13.64731 -13.28246 -13.01811 -12.58542 -12.51796 -12.43440 -12.33462 -12.26620 -11.88879 -11.76088 -11.74112 -11.58585 -11.47174 -11.20543 -10.99510 -10.72552 -10.52566 -10.47444 -10.40441 -10.05687 -9.74347 -9.60948 -9.21533 -8.96428 -8.65663 -8.29940 -5.94425 -3.96965 2.60612 2.82594 3.33593 3.40763 3.44572 4.02761 4.15896 4.32233 4.47888 4.49723 4.65120 4.74739 4.81230 4.86548 4.99398 5.12956 5.24758 5.30285 5.30724 5.36225 5.39967 5.41033 5.43410 5.50015 5.58938 5.69462 5.73203 5.81455 5.86065 5.94339 5.98050 6.13295 6.20095 6.32138 6.54833 6.83874 7.01574 7.20448 7.39887 7.75244 7.82745 7.91045 8.07056 8.23860 8.48776 9.10998 9.66732 11.16905 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.031521 B = 0.002988 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.083198 B = 9368.782027 C = 9871.691071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.118 3.882 3 C -0.179 4.179 4 O -0.551 6.551 5 C 0.114 3.886 6 H 0.080 0.920 7 C -0.129 4.129 8 C -0.133 4.133 9 C 0.098 3.902 10 N -0.621 5.621 11 C 0.521 3.479 12 O -0.516 6.516 13 C -0.135 4.135 14 C -0.104 4.104 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.380 0.620 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.680 9.217 15.161 28.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.076 3.924 3 C -0.237 4.237 4 O -0.363 6.363 5 C 0.010 3.990 6 H 0.098 0.902 7 C -0.167 4.167 8 C -0.171 4.171 9 C -0.025 4.025 10 N -0.357 5.357 11 C 0.312 3.688 12 O -0.392 6.392 13 C -0.174 4.174 14 C -0.142 4.142 15 C -0.147 4.147 16 C -0.017 4.017 17 C -0.558 4.558 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.211 1.211 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.235 0.765 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -22.327 8.500 14.419 27.905 hybrid contribution 1.654 0.415 0.186 1.716 sum -20.673 8.915 14.605 26.836 Atomic orbital electron populations 1.21779 0.92774 1.02668 1.02397 1.21449 0.94598 0.90709 0.85692 1.22549 1.01846 0.96726 1.02549 1.86543 1.34286 1.71471 1.44008 1.22286 0.80632 1.00687 0.95361 0.90183 1.22783 0.98160 1.01802 0.93933 1.22750 0.94068 1.03053 0.97272 1.22302 0.98716 0.97020 0.84465 1.48741 1.06060 1.57890 1.22986 1.20948 0.88407 0.78294 0.81185 1.90659 1.79815 1.37163 1.31604 1.21813 0.90013 1.02945 1.02662 1.21472 0.95716 1.00816 0.96155 1.21642 0.92210 1.00041 1.00837 1.19097 0.94010 0.95929 0.92700 1.21317 0.92408 1.32513 1.09567 0.92733 1.25045 0.98877 0.95288 0.95387 1.69985 1.34290 1.35673 1.13472 0.86563 0.85595 0.78027 0.77956 1.19791 1.21050 1.21054 0.91348 0.91703 0.91904 0.92253 0.91848 0.91520 0.76514 0.89999 0.89952 0.89691 0.90503 0.90227 0.91287 0.89293 0.89272 0.91708 0.91752 0.93530 0.93531 0.96576 0.96576 0.93093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.43 37.16 0.31 -0.88 16 2 C 0.12 1.26 0.94 -90.62 -0.08 1.17 16 3 C -0.18 -1.62 8.21 37.16 0.31 -1.31 16 4 O -0.55 -8.33 11.63 -58.88 -0.68 -9.01 16 5 C 0.11 1.14 2.54 -66.95 -0.17 0.97 16 6 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 7 C -0.13 -0.79 5.25 -24.89 -0.13 -0.92 16 8 C -0.13 -0.73 7.07 -24.70 -0.17 -0.91 16 9 C 0.10 0.71 6.64 -2.65 -0.02 0.69 16 10 N -0.62 -6.61 2.09 -163.16 -0.34 -6.95 16 11 C 0.52 7.26 6.98 -10.99 -0.08 7.18 16 12 O -0.52 -9.15 12.62 -18.09 -0.23 -9.37 16 13 C -0.13 -1.79 4.80 -27.88 -0.13 -1.92 16 14 C -0.10 -1.84 4.50 -26.73 -0.12 -1.96 16 15 C -0.11 -2.26 5.15 -26.74 -0.14 -2.40 16 16 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 17 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 18 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 19 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -27.65 13.29 55.43 0.74 -26.91 16 21 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 H 0.07 0.41 6.99 -51.93 -0.36 0.05 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.59 7.34 -51.93 -0.38 0.21 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.46 6.31 -51.93 -0.33 0.13 16 31 H 0.38 5.99 5.82 45.56 0.27 6.26 16 32 H 0.08 0.42 5.48 -51.93 -0.28 0.14 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.54 7.51 -51.93 -0.39 0.15 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.09 1.05 7.76 -51.93 -0.40 0.65 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 41 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 355.86 15.07 5.36 5.36 Total: -1.00 -33.89 355.86 -8.92 -42.80 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -7.76 Total: 0.86 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -0.98 Total: -13.73 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.39 Total: -33.86 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.91 Total: -18.39 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.89 -8.92 -42.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588665159.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.096 kcal (2) G-P(sol) polarization free energy of solvation -33.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds