Wall clock time and date at job start Tue Mar 31 2020 05:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47392 * 2 1 4 4 C 1.53000 * 109.47020 * 119.99601 * 2 1 3 5 5 H 1.09002 * 109.50721 * 60.09997 * 4 2 1 6 6 C 1.53290 * 109.55474 * 180.22718 * 4 2 1 7 7 N 1.47158 * 108.38592 * 172.25400 * 6 4 2 8 8 C 1.34777 * 120.98214 * 129.48657 * 7 6 4 9 9 O 1.21284 * 119.99980 * 359.97438 * 8 7 6 10 10 C 1.50699 * 119.99951 * 179.97438 * 8 7 6 11 11 C 1.52999 * 109.47264 * 179.97438 * 10 8 7 12 12 C 1.52992 * 109.47006 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.47006 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47483 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99464 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00359 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00050 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00148 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47094 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.47094 * 120.00194 * 18 16 14 21 21 H 1.48498 * 109.47432 * 240.01026 * 18 16 14 22 22 C 1.47150 * 118.03117 * 309.46485 * 7 6 4 23 23 C 1.53296 * 108.38576 * 50.53704 * 22 7 6 24 24 O 1.42953 * 109.22045 * 307.69415 * 23 22 7 25 25 H 1.09002 * 109.47287 * 300.00311 * 1 2 3 26 26 H 1.09007 * 109.46925 * 59.99875 * 1 2 3 27 27 H 1.08996 * 109.47464 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47287 * 239.99689 * 2 1 3 29 29 H 1.09002 * 109.47158 * 59.99610 * 3 2 1 30 30 H 1.08998 * 109.47448 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46849 * 299.99949 * 3 2 1 32 32 H 1.09001 * 109.68287 * 291.97787 * 6 4 2 33 33 H 1.09002 * 109.68578 * 52.49302 * 6 4 2 34 34 H 1.09009 * 109.46822 * 300.00233 * 10 8 7 35 35 H 1.08999 * 109.47504 * 59.99644 * 10 8 7 36 36 H 1.08997 * 109.47034 * 299.99978 * 11 10 8 37 37 H 1.09001 * 109.46522 * 59.99830 * 11 10 8 38 38 H 1.09004 * 109.47566 * 300.00243 * 12 11 10 39 39 H 1.08999 * 109.47485 * 59.99815 * 12 11 10 40 40 H 1.09001 * 109.47270 * 299.99733 * 13 12 11 41 41 H 1.09003 * 109.47180 * 60.00364 * 13 12 11 42 42 H 0.96996 * 120.00099 * 179.97438 * 17 16 14 43 43 H 1.08993 * 109.68655 * 290.80879 * 22 7 6 44 44 H 1.09005 * 109.67857 * 170.26014 * 22 7 6 45 45 H 1.09003 * 109.51253 * 67.61928 * 23 22 7 46 46 H 1.08997 * 109.50986 * 187.76970 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6784 -1.7495 1.2491 6 6 3.5729 -0.7173 1.2541 7 7 4.0343 -1.2467 2.5474 8 6 4.9527 -2.2314 2.6061 9 8 5.4111 -2.6948 1.5834 10 6 5.4099 -2.7565 3.9426 11 6 6.4464 -3.8614 3.7290 12 6 6.9110 -4.3940 5.0859 13 6 7.9471 -5.4993 4.8722 14 6 8.4053 -6.0237 6.2087 15 1 7.9978 -5.6101 7.1195 16 6 9.3438 -7.0319 6.2689 17 7 9.8395 -7.5358 5.1599 18 14 9.9122 -7.6813 7.9256 19 1 9.2078 -6.9525 9.0110 20 1 9.6032 -9.1306 8.0216 21 1 11.3768 -7.4772 8.0613 22 6 3.4637 -0.6687 3.7744 23 6 1.9360 -0.6749 3.6468 24 8 1.5639 -0.0479 2.4172 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 3.9441 -1.3476 0.4460 33 1 3.9379 0.3013 1.1225 34 1 5.8561 -1.9455 4.5183 35 1 4.5556 -3.1604 4.4859 36 1 5.9998 -4.6722 3.1535 37 1 7.3008 -3.4578 3.1856 38 1 7.3577 -3.5830 5.6611 39 1 6.0569 -4.7974 5.6297 40 1 7.5000 -6.3103 4.2973 41 1 8.8014 -5.0963 4.3283 42 1 10.5000 -8.2449 5.2022 43 1 3.8176 0.3548 3.8972 44 1 3.7626 -1.2668 4.6353 45 1 1.5742 -1.7031 3.6553 46 1 1.4988 -0.1274 4.4817 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588673364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:39 Heat of formation + Delta-G solvation = -111.641718 kcal Electronic energy + Delta-G solvation = -22531.044284 eV Core-core repulsion = 19226.650359 eV Total energy + Delta-G solvation = -3304.393925 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.64271 -38.81710 -35.82145 -35.00206 -34.73754 -32.65226 -30.89085 -29.77515 -28.10059 -27.35891 -25.69228 -24.35969 -23.10281 -21.84848 -20.21574 -20.03553 -19.10913 -17.23543 -16.84657 -16.19679 -16.10869 -15.97897 -15.46894 -15.28311 -14.54180 -14.43275 -14.33669 -14.06076 -13.60333 -13.35559 -12.86800 -12.75367 -12.46883 -12.28718 -12.20265 -12.03277 -11.64885 -11.55931 -11.50942 -11.20333 -11.05371 -11.00047 -10.83085 -10.55270 -10.48427 -10.41814 -10.37478 -9.78489 -9.61921 -9.22780 -8.97343 -8.72264 -8.30935 -5.95381 -3.97891 2.63422 2.71956 3.32960 3.34936 3.40115 3.43960 4.25858 4.40676 4.48250 4.53287 4.59893 4.67273 4.72632 4.80539 4.94599 5.12721 5.20736 5.25704 5.30390 5.31102 5.36201 5.39564 5.40111 5.44178 5.54363 5.59025 5.67000 5.74209 5.82023 5.97453 6.05730 6.12068 6.19100 6.30755 6.53798 6.79711 6.82914 7.00110 7.17650 7.23961 7.74248 7.89860 8.05990 8.14914 8.47768 9.10033 9.65810 11.16011 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.043719 B = 0.002488 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.294422 B =11249.811805 C =11574.657542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.147 4.147 4 C 0.083 3.917 5 H 0.062 0.938 6 C 0.079 3.921 7 N -0.625 5.625 8 C 0.516 3.484 9 O -0.533 6.533 10 C -0.137 4.137 11 C -0.103 4.103 12 C -0.110 4.110 13 C 0.019 3.981 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.054 3.946 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.072 3.928 23 C 0.047 3.953 24 O -0.372 6.372 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.047 0.953 39 H 0.046 0.954 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.259 0.741 43 H 0.077 0.923 44 H 0.099 0.901 45 H 0.056 0.944 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.962 18.960 -7.101 28.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 C -0.205 4.205 4 C 0.025 3.975 5 H 0.080 0.920 6 C -0.043 4.043 7 N -0.361 5.361 8 C 0.305 3.695 9 O -0.408 6.408 10 C -0.177 4.177 11 C -0.141 4.141 12 C -0.147 4.147 13 C -0.018 4.018 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.051 4.051 23 C -0.030 4.030 24 O -0.290 6.290 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.095 0.905 44 H 0.117 0.883 45 H 0.074 0.926 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -19.679 18.730 -7.724 28.244 hybrid contribution 0.538 -0.640 1.004 1.306 sum -19.141 18.091 -6.720 27.181 Atomic orbital electron populations 1.21756 0.94287 1.01801 1.02196 1.21131 0.96837 0.97069 0.95501 1.21854 1.00967 0.95427 1.02210 1.22518 0.92568 0.96114 0.86342 0.91959 1.22365 0.94344 1.00484 0.87156 1.48262 1.42879 1.38165 1.06760 1.21158 0.77734 0.77988 0.92578 1.90698 1.55418 1.57833 1.36878 1.21824 1.01348 1.00863 0.93656 1.21466 0.97048 0.96132 0.99501 1.21644 0.99662 0.99459 0.93960 1.19104 0.93206 0.92600 0.96881 1.21316 1.22862 1.18718 0.92857 0.92706 1.25049 0.96511 0.96734 0.96347 1.69983 1.29781 1.27197 1.26500 0.86554 0.78471 0.78712 0.84355 1.19784 1.21055 1.21046 1.22452 0.94524 1.00202 0.87958 1.22973 0.93687 0.98786 0.87568 1.87934 1.75669 1.52204 1.13238 0.91740 0.92633 0.92893 0.89795 0.91705 0.92497 0.92692 0.88274 0.90495 0.89098 0.89193 0.91806 0.91774 0.93465 0.93498 0.96585 0.96581 0.93095 0.90495 0.88269 0.92567 0.87529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.05 37.16 0.34 -0.63 16 2 C -0.09 -0.63 2.82 -90.62 -0.26 -0.89 16 3 C -0.15 -1.02 8.71 37.16 0.32 -0.69 16 4 C 0.08 0.74 2.51 -26.58 -0.07 0.67 16 5 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 6 C 0.08 0.82 5.75 -3.53 -0.02 0.80 16 7 N -0.62 -7.06 3.02 -172.28 -0.52 -7.58 16 8 C 0.52 7.51 7.71 -10.99 -0.08 7.43 16 9 O -0.53 -9.90 15.45 5.55 0.09 -9.82 16 10 C -0.14 -1.86 4.07 -27.88 -0.11 -1.97 16 11 C -0.10 -1.87 4.50 -26.74 -0.12 -1.99 16 12 C -0.11 -2.26 5.15 -26.74 -0.14 -2.40 16 13 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 14 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 15 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.63 13.29 55.43 0.74 -26.89 16 18 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 C 0.07 0.57 6.54 -3.53 -0.02 0.55 16 23 C 0.05 0.34 6.98 37.31 0.26 0.60 16 24 O -0.37 -3.31 9.04 -35.23 -0.32 -3.63 16 25 H 0.06 0.48 7.68 -51.93 -0.40 0.08 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.49 7.68 -51.93 -0.40 0.09 16 30 H 0.06 0.40 6.27 -51.93 -0.33 0.07 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.10 1.17 7.08 -51.93 -0.37 0.80 16 33 H 0.08 0.74 6.08 -51.93 -0.32 0.42 16 34 H 0.09 1.07 8.02 -51.92 -0.42 0.65 16 35 H 0.09 1.04 7.66 -51.93 -0.40 0.64 16 36 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 37 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.10 0.67 6.05 -51.93 -0.31 0.36 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 361.49 15.07 5.45 5.45 Total: -1.00 -33.83 361.49 -8.43 -42.26 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -8.39 Total: -4.75 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -0.45 Total: -11.97 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.22 Total: -34.47 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.23 Total: -13.44 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.83 -8.43 -42.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588673364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.377 kcal (2) G-P(sol) polarization free energy of solvation -33.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds