Wall clock time and date at job start Tue Mar 31 2020 05:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46830 * 2 1 4 4 C 1.52994 * 109.47141 * 119.99665 * 2 1 3 5 5 H 1.08996 * 109.51537 * 300.10583 * 4 2 1 6 6 C 1.53297 * 109.51164 * 179.97438 * 4 2 1 7 7 N 1.47150 * 108.41463 * 187.70598 * 6 4 2 8 8 C 1.34777 * 120.98603 * 230.54242 * 7 6 4 9 9 O 1.21288 * 119.99686 * 0.02562 * 8 7 6 10 10 C 1.50699 * 120.00359 * 180.02562 * 8 7 6 11 11 C 1.53000 * 109.46919 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.46783 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.46853 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.47000 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99736 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00306 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00512 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 119.99552 * 359.97438 * 16 14 13 19 19 H 1.48494 * 109.46946 * 90.00250 * 18 16 14 20 20 H 1.48501 * 109.46792 * 210.00209 * 18 16 14 21 21 H 1.48500 * 109.47167 * 329.99869 * 18 16 14 22 22 C 1.47227 * 117.98768 * 50.52570 * 7 6 4 23 23 C 1.53299 * 108.40126 * 309.48190 * 22 7 6 24 24 O 1.42959 * 109.22435 * 52.30769 * 23 22 7 25 25 H 1.09001 * 109.46861 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47286 * 300.00029 * 1 2 3 27 27 H 1.09002 * 109.47338 * 60.00106 * 1 2 3 28 28 H 1.09003 * 109.46850 * 240.00338 * 2 1 3 29 29 H 1.09000 * 109.46559 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47073 * 300.00056 * 3 2 1 31 31 H 1.08994 * 109.47210 * 59.99924 * 3 2 1 32 32 H 1.09002 * 109.68431 * 307.45213 * 6 4 2 33 33 H 1.08999 * 109.67914 * 67.96799 * 6 4 2 34 34 H 1.08996 * 109.47113 * 300.00543 * 10 8 7 35 35 H 1.08999 * 109.46815 * 60.00120 * 10 8 7 36 36 H 1.09002 * 109.47258 * 300.00017 * 11 10 8 37 37 H 1.08999 * 109.47325 * 60.00376 * 11 10 8 38 38 H 1.09002 * 109.47022 * 299.99898 * 12 11 10 39 39 H 1.08999 * 109.47097 * 59.99974 * 12 11 10 40 40 H 1.09002 * 109.46938 * 299.99600 * 13 12 11 41 41 H 1.08992 * 109.47477 * 59.99582 * 13 12 11 42 42 H 0.96996 * 119.99923 * 180.02562 * 17 16 14 43 43 H 1.09000 * 109.67268 * 189.75452 * 22 7 6 44 44 H 1.08998 * 109.67934 * 69.21015 * 22 7 6 45 45 H 1.08996 * 109.51416 * 292.37699 * 23 22 7 46 46 H 1.09008 * 109.54832 * 172.25461 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 1 1.6755 -0.2089 2.1396 6 6 3.5730 -0.7222 1.2498 7 7 4.0368 -1.5762 2.3548 8 6 4.9526 -1.1317 3.2380 9 8 5.4068 -0.0124 3.1290 10 6 5.4123 -2.0253 4.3610 11 6 6.4452 -1.2841 5.2123 12 6 6.9125 -2.1917 6.3520 13 6 7.9449 -1.4503 7.2037 14 6 8.4056 -2.3444 8.3260 15 1 8.0020 -3.3415 8.4224 16 6 9.3415 -1.8891 9.2303 17 7 9.7431 -2.6691 10.2100 18 14 10.0390 -0.1641 9.0640 19 1 9.1972 0.7865 9.8339 20 1 11.4261 -0.1380 9.5935 21 1 10.0482 0.2301 7.6323 22 6 3.4698 -2.9304 2.4662 23 6 1.9419 -2.8217 2.4063 24 8 1.5684 -2.0708 1.2486 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.9402 -1.1163 0.3022 33 1 3.9407 0.2939 1.3920 34 1 4.5586 -2.2976 4.9815 35 1 5.8625 -2.9273 3.9464 36 1 7.2991 -1.0116 4.5920 37 1 5.9947 -0.3823 5.6268 38 1 6.0587 -2.4646 6.9724 39 1 7.3631 -3.0933 5.9371 40 1 8.7987 -1.1770 6.5836 41 1 7.4939 -0.5489 7.6185 42 1 10.4013 -2.3486 10.8464 43 1 3.7692 -3.3766 3.4146 44 1 3.8266 -3.5468 1.6411 45 1 1.5774 -2.3170 3.3010 46 1 1.5072 -3.8198 2.3488 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588673366.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:43 Heat of formation + Delta-G solvation = -110.191801 kcal Electronic energy + Delta-G solvation = -22561.681751 eV Core-core repulsion = 19257.350699 eV Total energy + Delta-G solvation = -3304.331052 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.67196 -38.83674 -35.95712 -35.14134 -34.85327 -32.61531 -31.00662 -30.10591 -28.31804 -27.22227 -25.90097 -24.42843 -22.89560 -21.61831 -20.59848 -20.05777 -19.12706 -17.36484 -16.98711 -16.59653 -16.23324 -16.01698 -15.46334 -15.22492 -14.57507 -14.38825 -14.21483 -14.04324 -13.62325 -13.45078 -13.05661 -12.74528 -12.53740 -12.49605 -12.37440 -12.04550 -11.87398 -11.73829 -11.62395 -11.37285 -11.16175 -11.13060 -10.79246 -10.73193 -10.55208 -10.43805 -9.95045 -9.82392 -9.65503 -9.43419 -9.12426 -8.79726 -8.49703 -6.00864 -3.98365 2.56504 2.66157 3.26831 3.35080 3.42109 3.48191 4.20575 4.38627 4.48290 4.49822 4.54456 4.65980 4.68367 4.83551 4.89881 4.99256 5.14477 5.20352 5.24056 5.25324 5.28379 5.33408 5.34332 5.41241 5.48670 5.51917 5.60919 5.70763 5.73764 5.90812 5.95555 6.00381 6.08932 6.18568 6.40037 6.66536 6.76496 6.79964 6.97790 7.15656 7.37348 7.50204 7.84340 8.07704 8.57873 9.03973 9.62529 11.12603 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.034080 B = 0.002714 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.399234 B =10313.629491 C =10879.882800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.152 4.152 4 C 0.083 3.917 5 H 0.063 0.937 6 C 0.081 3.919 7 N -0.625 5.625 8 C 0.516 3.484 9 O -0.535 6.535 10 C -0.138 4.138 11 C -0.106 4.106 12 C -0.102 4.102 13 C -0.015 4.015 14 C -0.519 4.519 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.264 1.264 22 C 0.071 3.929 23 C 0.048 3.952 24 O -0.375 6.375 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.015 0.985 41 H 0.011 0.989 42 H 0.262 0.738 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.056 0.944 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.861 1.916 -22.343 29.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 C -0.209 4.209 4 C 0.024 3.976 5 H 0.081 0.919 6 C -0.041 4.041 7 N -0.360 5.360 8 C 0.306 3.694 9 O -0.410 6.410 10 C -0.177 4.177 11 C -0.144 4.144 12 C -0.140 4.140 13 C -0.053 4.053 14 C -0.557 4.557 15 H 0.089 0.911 16 C -0.136 4.136 17 N -0.545 5.545 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.189 1.189 22 C -0.052 4.052 23 C -0.030 4.030 24 O -0.294 6.294 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.034 0.966 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.118 0.882 44 H 0.096 0.904 45 H 0.075 0.925 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -19.579 2.446 -22.382 29.837 hybrid contribution 0.579 0.780 0.295 1.015 sum -19.000 3.227 -22.087 29.313 Atomic orbital electron populations 1.21757 0.94244 1.02449 1.01570 1.21072 0.96841 0.95742 0.96802 1.21899 1.01592 0.94922 1.02467 1.22558 0.92557 0.83411 0.99026 0.91901 1.22330 0.94358 0.97509 0.89949 1.48275 1.42996 1.15345 1.29418 1.21133 0.77710 0.88025 0.82515 1.90691 1.55621 1.20699 1.74022 1.21806 1.01341 0.99233 0.95350 1.21499 0.97243 0.98813 0.96871 1.21476 0.99358 0.97930 0.95205 1.19576 0.94285 0.96092 0.95331 1.21178 1.23322 1.01525 1.09696 0.91109 1.25044 0.96195 0.97395 0.94993 1.69918 1.32195 1.36589 1.15811 0.86773 0.78283 0.85242 0.79002 1.20321 1.21448 1.18903 1.22484 0.94576 0.84003 1.04148 1.22980 0.93655 0.97375 0.88964 1.87937 1.75879 1.23438 1.42115 0.91788 0.92851 0.92589 0.90208 0.92015 0.91820 0.92276 0.90977 0.87957 0.89018 0.88917 0.91759 0.91799 0.92878 0.92818 0.96619 0.97063 0.92813 0.88178 0.90399 0.92521 0.87421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.05 37.16 0.34 -0.61 16 2 C -0.09 -0.61 2.72 -90.62 -0.25 -0.86 16 3 C -0.15 -1.00 8.85 37.16 0.33 -0.67 16 4 C 0.08 0.72 2.35 -26.58 -0.06 0.66 16 5 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 6 C 0.08 0.82 5.32 -3.53 -0.02 0.80 16 7 N -0.62 -6.82 3.02 -172.21 -0.52 -7.34 16 8 C 0.52 7.19 7.71 -10.99 -0.08 7.10 16 9 O -0.53 -9.48 15.45 5.55 0.09 -9.40 16 10 C -0.14 -1.76 4.08 -27.88 -0.11 -1.87 16 11 C -0.11 -1.79 4.50 -26.73 -0.12 -1.92 16 12 C -0.10 -2.00 5.15 -26.73 -0.14 -2.14 16 13 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 14 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 15 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 16 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 17 N -0.91 -28.40 13.96 55.43 0.77 -27.63 16 18 Si 0.88 22.40 27.47 -169.99 -4.67 17.73 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.26 -6.54 6.54 56.52 0.37 -6.18 16 22 C 0.07 0.55 6.54 -3.49 -0.02 0.53 16 23 C 0.05 0.34 6.98 37.31 0.26 0.60 16 24 O -0.38 -3.37 9.73 -35.23 -0.34 -3.72 16 25 H 0.06 0.47 7.69 -51.93 -0.40 0.07 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.43 6.62 -51.93 -0.34 0.09 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 1.16 5.84 -51.93 -0.30 0.86 16 34 H 0.09 1.00 7.66 -51.93 -0.40 0.60 16 35 H 0.09 1.03 8.02 -51.93 -0.42 0.61 16 36 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 37 H 0.06 1.14 8.10 -51.93 -0.42 0.71 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 41 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 42 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 43 H 0.10 0.65 6.06 -51.93 -0.31 0.33 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.11 0.53 8.14 -51.92 -0.42 0.11 16 LS Contribution 359.68 15.07 5.42 5.42 Total: -1.00 -34.11 359.68 -8.12 -42.23 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -8.44 Total: -4.80 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -0.42 Total: -12.49 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.25 Total: -34.97 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.26 Total: -13.11 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.67 Total: 17.73 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.11 -8.12 -42.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588673366.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.966 kcal (2) G-P(sol) polarization free energy of solvation -34.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds