Wall clock time and date at job start Tue Mar 31 2020 05:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47354 * 2 1 4 4 O 1.42908 * 109.46908 * 239.99818 * 2 1 3 5 5 C 1.53002 * 109.47164 * 120.00418 * 2 1 3 6 6 N 1.46496 * 109.47153 * 180.33689 * 5 2 1 7 7 C 1.34776 * 119.99933 * 275.60253 * 6 5 2 8 8 O 1.21284 * 119.99928 * 4.69019 * 7 6 5 9 9 C 1.50699 * 120.00248 * 184.68593 * 7 6 5 10 10 C 1.53007 * 109.47218 * 184.88067 * 9 7 6 11 11 C 1.53001 * 109.46983 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46714 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46887 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00135 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99951 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00030 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00060 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47172 * 59.99518 * 17 15 13 19 19 H 1.48502 * 109.47391 * 179.97438 * 17 15 13 20 20 H 1.48512 * 109.46820 * 299.99874 * 17 15 13 21 21 C 1.46502 * 120.00348 * 95.32937 * 6 5 2 22 22 C 1.52997 * 117.49972 * 64.87800 * 21 6 5 23 23 C 1.52998 * 117.49803 * 356.25497 * 21 6 5 24 24 H 1.08995 * 109.46919 * 299.99644 * 1 2 3 25 25 H 1.09002 * 109.47026 * 59.99914 * 1 2 3 26 26 H 1.09007 * 109.47137 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47135 * 183.76079 * 3 2 1 28 28 H 1.09002 * 109.47099 * 303.76035 * 3 2 1 29 29 H 1.08992 * 109.47136 * 63.76019 * 3 2 1 30 30 H 0.96696 * 113.99518 * 60.00526 * 4 2 1 31 31 H 1.09003 * 109.47476 * 60.33160 * 5 2 1 32 32 H 1.09002 * 109.46740 * 300.33228 * 5 2 1 33 33 H 1.09002 * 109.47347 * 304.87807 * 9 7 6 34 34 H 1.09000 * 109.46989 * 64.88001 * 9 7 6 35 35 H 1.09002 * 109.46749 * 300.00106 * 10 9 7 36 36 H 1.09000 * 109.47195 * 60.00059 * 10 9 7 37 37 H 1.09000 * 109.46970 * 299.99872 * 11 10 9 38 38 H 1.09000 * 109.47121 * 59.99996 * 11 10 9 39 39 H 1.09000 * 109.47313 * 299.99681 * 12 11 10 40 40 H 1.09000 * 109.47314 * 60.00133 * 12 11 10 41 41 H 0.97005 * 119.99608 * 179.97438 * 16 15 13 42 42 H 1.08999 * 115.54649 * 210.59236 * 21 6 5 43 43 H 1.09002 * 117.49429 * 0.02562 * 22 21 6 44 44 H 1.08999 * 117.49813 * 145.01719 * 22 21 6 45 45 H 1.08993 * 117.50503 * 214.97893 * 23 21 6 46 46 H 1.09008 * 117.49703 * 359.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 7 3.5050 -0.7143 1.2533 7 6 4.1853 -1.6587 0.5737 8 8 3.5876 -2.4628 -0.1098 9 6 5.6885 -1.7156 0.6631 10 6 6.2158 -2.7910 -0.2890 11 6 7.7420 -2.8491 -0.1978 12 6 8.2691 -3.9249 -1.1494 13 6 9.7723 -3.9826 -1.0591 14 1 10.2990 -3.3181 -0.3902 15 6 10.4752 -4.8830 -1.8312 16 7 9.8339 -5.6918 -2.6462 17 14 12.3386 -4.9540 -1.7198 18 1 12.7390 -5.2849 -0.3287 19 1 12.8503 -5.9983 -2.6434 20 1 12.9077 -3.6356 -2.0984 21 6 4.2305 0.3227 1.9910 22 6 4.0805 0.3426 3.5135 23 6 3.4039 1.4203 2.6640 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1280 1.4431 -0.0674 28 1 1.6228 1.9754 -0.8544 29 1 1.7328 1.9364 0.9217 30 1 1.7210 -0.2701 -1.9979 31 1 1.6816 -1.7507 1.2462 32 1 1.6718 -0.2110 2.1392 33 1 6.1060 -0.7478 0.3850 34 1 5.9828 -1.9584 1.6842 35 1 5.7984 -3.7587 -0.0110 36 1 5.9215 -2.5482 -1.3101 37 1 8.1597 -1.8814 -0.4755 38 1 8.0359 -3.0921 0.8233 39 1 7.8514 -4.8925 -0.8712 40 1 7.9752 -3.6823 -2.1706 41 1 10.3286 -6.3249 -3.1897 42 1 5.1985 0.6044 1.5766 43 1 3.4423 -0.4163 3.9662 44 1 4.9501 0.6371 4.1011 45 1 3.8281 2.4238 2.6929 46 1 2.3201 1.3709 2.5575 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589848087.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:42 Heat of formation + Delta-G solvation = -78.855882 kcal Electronic energy + Delta-G solvation = -23020.778516 eV Core-core repulsion = 19717.806291 eV Total energy + Delta-G solvation = -3302.972225 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.39506 -38.05159 -37.30503 -34.80486 -33.39935 -32.58442 -32.10292 -29.75781 -27.68610 -27.12328 -25.10829 -22.88267 -22.60792 -21.97816 -20.77028 -19.89687 -18.59175 -17.35411 -16.63388 -16.28583 -16.08410 -15.91553 -15.01040 -14.94078 -14.41332 -14.04593 -13.97814 -13.85765 -13.46274 -12.92137 -12.52289 -12.49451 -12.33532 -12.12781 -11.94137 -11.85668 -11.64576 -11.53777 -11.47944 -11.19786 -10.98911 -10.92319 -10.82758 -10.48229 -10.40735 -10.30543 -10.09385 -9.52934 -9.50216 -9.12695 -8.91655 -8.49243 -8.25204 -5.90140 -3.92542 2.84867 2.89828 3.38511 3.42631 3.45027 3.55655 4.02593 4.37551 4.50946 4.52085 4.53873 4.62821 4.73839 4.77800 4.81941 5.10661 5.20493 5.25418 5.39036 5.44593 5.45874 5.46284 5.47022 5.54057 5.59541 5.65357 5.73335 5.78491 5.80801 5.99153 6.01998 6.25112 6.39466 6.49982 6.65786 6.94445 7.12223 7.27879 7.48210 7.65749 7.79933 7.97442 8.12124 8.47979 8.53850 9.15146 9.70662 11.21189 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.026576 B = 0.003048 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.313946 B = 9184.902031 C = 9843.318773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.108 3.892 3 C -0.178 4.178 4 O -0.532 6.532 5 C 0.129 3.871 6 N -0.590 5.590 7 C 0.518 3.482 8 O -0.505 6.505 9 C -0.135 4.135 10 C -0.102 4.102 11 C -0.109 4.109 12 C 0.020 3.980 13 C -0.520 4.520 14 H 0.053 0.947 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.077 3.923 22 C -0.195 4.195 23 C -0.190 4.190 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.366 0.634 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.016 0.984 40 H 0.015 0.985 41 H 0.260 0.740 42 H 0.131 0.869 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.170 18.021 11.122 28.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.066 3.934 3 C -0.235 4.235 4 O -0.336 6.336 5 C 0.006 3.994 6 N -0.324 5.324 7 C 0.307 3.693 8 O -0.377 6.377 9 C -0.175 4.175 10 C -0.140 4.140 11 C -0.147 4.147 12 C -0.017 4.017 13 C -0.558 4.558 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.028 4.028 22 C -0.234 4.234 23 C -0.227 4.227 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.212 0.788 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.148 0.852 43 H 0.114 0.886 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.184 16.995 11.042 27.907 hybrid contribution 0.691 0.519 -0.294 0.913 sum -18.493 17.514 10.748 27.645 Atomic orbital electron populations 1.22459 0.95784 1.02905 1.02364 1.21620 0.92196 0.91674 0.87935 1.22616 1.02821 0.96084 1.01983 1.86904 1.76452 1.55702 1.14568 1.21392 0.80638 1.01995 0.95389 1.47394 1.05180 1.28529 1.51270 1.20896 0.90435 0.79834 0.78152 1.90727 1.70541 1.39215 1.37235 1.21795 0.90717 1.02213 1.02735 1.21446 0.96999 0.97239 0.98364 1.21641 0.92070 1.00511 1.00483 1.19088 0.95209 0.93219 0.94162 1.21261 0.92327 1.19010 1.23238 0.92837 1.25042 0.98312 0.95736 0.95485 1.69973 1.35458 1.22186 1.25888 0.86679 0.85975 0.77612 0.77822 1.20308 1.21338 1.20307 1.21743 0.97621 0.92325 0.91116 1.23474 1.03715 1.01728 0.94496 1.23498 0.99852 0.95165 1.04183 0.91882 0.92121 0.91583 0.91277 0.92815 0.91679 0.78808 0.89760 0.89593 0.89814 0.89325 0.91847 0.91950 0.93619 0.93572 0.96608 0.96619 0.93025 0.85197 0.88588 0.87914 0.87858 0.88062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 8.82 37.16 0.33 -0.96 16 2 C 0.11 1.01 1.17 -90.62 -0.11 0.91 16 3 C -0.18 -1.37 7.32 37.15 0.27 -1.09 16 4 O -0.53 -6.78 10.79 -55.03 -0.59 -7.37 16 5 C 0.13 1.32 4.39 -4.04 -0.02 1.30 16 6 N -0.59 -6.78 2.41 -166.11 -0.40 -7.18 16 7 C 0.52 8.01 7.20 -10.99 -0.08 7.93 16 8 O -0.50 -9.87 14.11 -14.25 -0.20 -10.07 16 9 C -0.13 -1.99 4.55 -27.88 -0.13 -2.12 16 10 C -0.10 -1.96 4.52 -26.73 -0.12 -2.08 16 11 C -0.11 -2.35 5.15 -26.73 -0.14 -2.49 16 12 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 13 C -0.52 -15.32 9.11 -34.44 -0.31 -15.63 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -28.03 13.29 55.43 0.74 -27.29 16 17 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C 0.08 0.66 4.75 -67.93 -0.32 0.33 16 22 C -0.20 -1.36 10.34 -26.73 -0.28 -1.64 16 23 C -0.19 -1.15 8.02 -26.73 -0.21 -1.37 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 27 H 0.07 0.64 6.75 -51.93 -0.35 0.29 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.39 6.01 -51.93 -0.31 0.08 16 30 H 0.37 3.35 9.04 45.56 0.41 3.76 16 31 H 0.08 1.05 7.67 -51.93 -0.40 0.65 16 32 H 0.09 0.64 5.92 -51.93 -0.31 0.33 16 33 H 0.08 1.08 7.16 -51.93 -0.37 0.71 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.30 8.05 -51.93 -0.42 0.88 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 42 H 0.13 1.06 6.81 -51.93 -0.35 0.70 16 43 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.10 0.57 4.56 -51.92 -0.24 0.33 16 LS Contribution 361.08 15.07 5.44 5.44 Total: -1.00 -35.41 361.08 -8.76 -44.17 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -7.37 Total: 0.02 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -1.35 Total: -14.94 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.34 Total: -34.47 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.79 Total: -17.45 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.41 -8.76 -44.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589848087.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.682 kcal (2) G-P(sol) polarization free energy of solvation -35.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds