Wall clock time and date at job start Tue Mar 31 2020 06:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47475 * 2 1 4 4 H 1.09002 * 110.53433 * 52.38924 * 3 2 1 5 5 C 1.54262 * 110.48575 * 289.77695 * 3 2 1 6 6 C 1.53869 * 106.59949 * 217.70816 * 5 3 2 7 7 C 1.54268 * 106.59842 * 0.02562 * 6 5 3 8 8 C 1.54887 * 110.48486 * 174.99893 * 3 2 1 9 9 H 1.09000 * 110.75785 * 38.12559 * 8 3 2 10 10 C 1.50699 * 110.75780 * 274.93341 * 8 3 2 11 11 O 1.21276 * 120.00065 * 336.55392 * 10 8 3 12 12 N 1.34776 * 119.99529 * 156.55225 * 10 8 3 13 13 C 1.46508 * 119.99720 * 175.76209 * 12 10 8 14 14 C 1.50699 * 109.46932 * 89.99687 * 13 12 10 15 15 H 1.07997 * 120.00282 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99699 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00273 * 0.02562 * 16 14 13 18 18 Si 1.86810 * 120.00001 * 179.72540 * 16 14 13 19 19 H 1.48497 * 109.46651 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46827 * 119.99891 * 18 16 14 21 21 H 1.48494 * 109.46949 * 240.00199 * 18 16 14 22 22 C 1.46494 * 120.00447 * 355.75929 * 12 10 8 23 23 C 1.52995 * 109.47427 * 266.42682 * 22 12 10 24 24 O 1.42904 * 109.47322 * 64.99408 * 23 22 12 25 25 C 1.42898 * 114.00221 * 179.97438 * 24 23 22 26 26 H 1.09000 * 109.47048 * 300.00008 * 1 2 3 27 27 H 1.08996 * 109.47186 * 60.00025 * 1 2 3 28 28 H 1.09002 * 109.47150 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47048 * 239.99992 * 2 1 3 30 30 H 1.09000 * 109.46906 * 120.00391 * 2 1 3 31 31 H 1.09000 * 110.03314 * 336.99911 * 5 3 2 32 32 H 1.09001 * 110.03217 * 98.37349 * 5 3 2 33 33 H 1.09003 * 110.03317 * 119.28150 * 6 5 3 34 34 H 1.08997 * 110.03657 * 240.71298 * 6 5 3 35 35 H 1.08998 * 110.48511 * 264.93027 * 7 6 5 36 36 H 1.08995 * 110.48593 * 142.28903 * 7 6 5 37 37 H 1.08998 * 109.46778 * 330.00176 * 13 12 10 38 38 H 1.08993 * 109.46803 * 209.99960 * 13 12 10 39 39 H 0.97001 * 119.99910 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.46843 * 26.42677 * 22 12 10 41 41 H 1.09000 * 109.47079 * 146.42311 * 22 12 10 42 42 H 1.09001 * 109.47565 * 184.99750 * 23 22 12 43 43 H 1.09003 * 109.47242 * 305.00206 * 23 22 12 44 44 H 1.08997 * 109.47221 * 300.00987 * 25 24 23 45 45 H 1.08998 * 109.46665 * 60.00801 * 25 24 23 46 46 H 1.08998 * 109.47099 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5802 2.0106 0.8086 5 6 1.7591 2.1145 -1.3598 6 6 2.9737 3.0072 -1.6683 7 6 3.9508 2.8461 -0.4854 8 6 3.5835 1.4716 0.1265 9 1 4.0333 0.6593 -0.4444 10 6 4.0023 1.4013 1.5724 11 8 3.2358 1.7538 2.4436 12 7 5.2288 0.9468 1.8973 13 6 5.6706 0.9652 3.2941 14 6 5.2894 -0.3325 3.9586 15 1 4.7705 -1.0949 3.3967 16 6 5.6033 -0.5464 5.2840 17 7 6.2348 0.3822 5.9685 18 14 5.1240 -2.1520 6.1100 19 1 4.4223 -3.0215 5.1319 20 1 6.3455 -2.8416 6.5975 21 1 4.2240 -1.8693 7.2567 22 6 6.1202 0.4342 0.8539 23 6 5.9539 -1.0825 0.7408 24 8 4.6317 -1.3845 0.2904 25 6 4.3707 -2.7823 0.1498 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6464 1.3563 -2.1348 32 1 0.8555 2.7208 -1.2970 33 1 3.4508 2.6823 -2.5930 34 1 2.6602 4.0475 -1.7550 35 1 3.7998 3.6408 0.2451 36 1 4.9816 2.8432 -0.8397 37 1 5.1924 1.7945 3.8154 38 1 6.7529 1.0884 3.3312 39 1 6.4552 0.2318 6.9011 40 1 5.8690 0.8993 -0.0993 41 1 7.1532 0.6682 1.1113 42 1 6.6791 -1.4755 0.0282 43 1 6.1186 -1.5399 1.7164 44 1 5.0631 -3.2101 -0.5752 45 1 4.5027 -3.2752 1.1130 46 1 3.3472 -2.9278 -0.1959 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590629592.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:34 Heat of formation + Delta-G solvation = -106.517190 kcal Electronic energy + Delta-G solvation = -24599.284330 eV Core-core repulsion = 21295.112621 eV Total energy + Delta-G solvation = -3304.171709 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.69897 -37.63765 -36.95469 -34.70741 -32.96189 -32.56086 -29.52580 -29.14041 -27.36264 -26.82813 -25.91633 -23.31287 -22.45387 -22.20354 -20.58476 -19.44470 -18.09415 -16.74944 -16.51563 -16.19443 -15.26235 -15.13452 -14.87160 -14.74996 -14.47724 -14.01880 -13.67670 -13.49740 -12.97309 -12.81321 -12.58461 -12.26900 -12.13500 -11.95113 -11.70935 -11.49387 -11.39398 -11.20947 -11.04890 -11.01094 -10.80898 -10.72591 -10.55807 -10.32251 -10.17241 -10.13002 -10.05804 -10.02150 -9.52606 -9.20281 -8.61168 -8.39336 -7.54509 -5.99953 -4.02922 3.30034 3.38313 3.41402 3.60173 4.05078 4.20236 4.47723 4.76518 4.90700 4.95091 5.32665 5.36403 5.41865 5.45821 5.49376 5.54337 5.58152 5.61314 5.69266 5.70457 5.81489 5.82356 5.86689 5.89353 5.94659 5.98309 6.02374 6.07588 6.10906 6.19109 6.27437 6.37664 6.43366 6.47021 6.51479 6.71791 6.86649 7.14016 7.48413 7.51355 7.70873 7.98422 8.31064 8.57476 8.99251 9.30044 9.62103 11.08183 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.016643 B = 0.005901 C = 0.005692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.974363 B = 4743.948938 C = 4918.236367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.073 4.073 4 H 0.086 0.914 5 C -0.118 4.118 6 C -0.120 4.120 7 C -0.112 4.112 8 C -0.112 4.112 9 H 0.106 0.894 10 C 0.526 3.474 11 O -0.544 6.544 12 N -0.597 5.597 13 C 0.245 3.755 14 C -0.515 4.515 15 H 0.060 0.940 16 C 0.059 3.941 17 N -0.897 5.897 18 Si 0.893 3.107 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.283 1.283 22 C 0.118 3.882 23 C 0.038 3.962 24 O -0.381 6.381 25 C 0.035 3.965 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.041 0.959 38 H 0.029 0.971 39 H 0.261 0.739 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.033 0.967 45 H 0.040 0.960 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.204 -0.740 -17.168 17.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.092 4.092 4 H 0.104 0.896 5 C -0.155 4.155 6 C -0.158 4.158 7 C -0.150 4.150 8 C -0.133 4.133 9 H 0.124 0.876 10 C 0.313 3.687 11 O -0.421 6.421 12 N -0.329 5.329 13 C 0.126 3.874 14 C -0.554 4.554 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.536 5.536 18 Si 0.721 3.279 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.209 1.209 22 C -0.007 4.007 23 C -0.040 4.040 24 O -0.300 6.300 25 C -0.062 4.062 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.062 0.938 43 H 0.091 0.909 44 H 0.051 0.949 45 H 0.058 0.942 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.661 -0.359 -16.539 16.943 hybrid contribution 0.128 -1.329 0.668 1.493 sum -3.533 -1.688 -15.871 16.347 Atomic orbital electron populations 1.21771 0.96593 1.00901 1.01399 1.21469 0.94912 0.96114 1.02203 1.21862 0.93643 0.96442 0.97212 0.89593 1.22211 0.97633 0.98408 0.97285 1.22093 0.96117 0.99612 0.97950 1.22280 0.98886 0.96519 0.97308 1.22410 0.97268 0.98866 0.94794 0.87619 1.20124 0.81483 0.77053 0.90046 1.90629 1.51134 1.49492 1.50864 1.48111 1.14558 1.60731 1.09473 1.19257 0.94810 0.98110 0.75227 1.21509 1.36771 1.01408 0.95728 0.92212 1.24941 0.95311 0.96855 0.97155 1.69944 1.40999 1.33317 1.09368 0.86520 0.78108 0.83655 0.79598 1.19915 1.21117 1.20922 1.21474 0.95287 0.91928 0.91996 1.23163 0.83648 0.97569 0.99588 1.87857 1.31608 1.22794 1.87697 1.22629 1.00741 0.83012 0.99772 0.92808 0.93225 0.93375 0.92419 0.91402 0.91987 0.92207 0.92052 0.92098 0.91338 0.91626 0.94101 0.95324 0.92923 0.90845 0.89619 0.93817 0.90861 0.94883 0.94161 0.90341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.79 37.16 0.36 -1.55 16 2 C -0.11 -1.62 5.32 -26.73 -0.14 -1.77 16 3 C -0.07 -1.12 2.15 -88.96 -0.19 -1.31 16 4 H 0.09 1.55 7.24 -51.93 -0.38 1.18 16 5 C -0.12 -1.42 5.69 -25.62 -0.15 -1.56 16 6 C -0.12 -1.36 6.80 -25.62 -0.17 -1.54 16 7 C -0.11 -1.54 6.16 -25.08 -0.15 -1.70 16 8 C -0.11 -1.83 1.55 -89.79 -0.14 -1.96 16 9 H 0.11 1.65 4.87 -51.93 -0.25 1.40 16 10 C 0.53 11.32 6.55 -10.99 -0.07 11.25 16 11 O -0.54 -14.20 15.43 5.56 0.09 -14.12 16 12 N -0.60 -12.78 2.42 -175.07 -0.42 -13.20 16 13 C 0.25 6.42 5.17 -5.19 -0.03 6.39 16 14 C -0.52 -14.53 8.57 -34.44 -0.30 -14.83 16 15 H 0.06 1.71 7.28 -52.49 -0.38 1.33 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 17 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 18 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 19 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 22 C 0.12 1.93 5.70 -4.05 -0.02 1.90 16 23 C 0.04 0.60 6.22 37.15 0.23 0.84 16 24 O -0.38 -6.17 8.53 -35.23 -0.30 -6.47 16 25 C 0.04 0.47 11.01 101.05 1.11 1.58 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.55 7.62 -51.93 -0.40 0.16 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.78 7.95 -51.93 -0.41 0.37 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.06 0.68 7.71 -51.93 -0.40 0.28 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 1.04 8.04 -51.93 -0.42 0.63 16 36 H 0.07 0.80 7.72 -51.93 -0.40 0.40 16 37 H 0.04 1.22 7.48 -51.93 -0.39 0.83 16 38 H 0.03 0.75 7.93 -51.93 -0.41 0.34 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.07 1.02 5.70 -51.93 -0.30 0.72 16 41 H 0.09 1.28 7.94 -51.93 -0.41 0.87 16 42 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 1.39 6.80 -51.93 -0.35 1.04 16 44 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 360.69 15.07 5.44 5.44 Total: -1.00 -32.67 360.69 -7.51 -40.18 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -8.26 Total: -0.15 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 0.25 Total: -2.67 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.31 Total: -39.24 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.21 Total: -20.59 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.67 -7.51 -40.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590629592.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.340 kcal (2) G-P(sol) polarization free energy of solvation -32.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds