Wall clock time and date at job start Tue Mar 31 2020 06:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47215 * 2 1 4 4 H 1.08996 * 110.05760 * 307.04371 * 3 2 1 5 5 C 1.54263 * 110.03429 * 68.46832 * 3 2 1 6 6 C 1.54897 * 104.19592 * 142.89440 * 5 3 2 7 7 C 1.54897 * 102.74560 * 322.05492 * 6 5 3 8 8 C 1.53879 * 110.02891 * 185.63668 * 3 2 1 9 9 H 1.08996 * 110.07676 * 121.40761 * 8 3 2 10 10 C 1.50698 * 110.03361 * 359.97438 * 8 3 2 11 11 O 1.21282 * 120.00068 * 280.71947 * 10 8 3 12 12 N 1.34775 * 120.00170 * 100.72673 * 10 8 3 13 13 C 1.46503 * 119.99620 * 5.29194 * 12 10 8 14 14 C 1.50699 * 109.47196 * 272.71146 * 13 12 10 15 15 H 1.07994 * 120.00374 * 354.85408 * 14 13 12 16 16 C 1.37874 * 119.99863 * 174.84563 * 14 13 12 17 17 N 1.31515 * 120.00201 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00201 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.46870 * 90.00251 * 18 16 14 20 20 H 1.48501 * 109.47134 * 210.00277 * 18 16 14 21 21 H 1.48498 * 109.46791 * 330.00363 * 18 16 14 22 22 C 1.46497 * 120.00272 * 185.29897 * 12 10 8 23 23 C 1.53002 * 109.47143 * 269.99706 * 22 12 10 24 24 O 1.42899 * 109.46813 * 64.99764 * 23 22 12 25 25 C 1.42901 * 113.99414 * 180.02562 * 24 23 22 26 26 H 1.09004 * 109.46714 * 59.99941 * 1 2 3 27 27 H 1.08994 * 109.47511 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46744 * 300.00223 * 1 2 3 29 29 H 1.08998 * 109.47175 * 239.99588 * 2 1 3 30 30 H 1.09004 * 109.46714 * 120.00058 * 2 1 3 31 31 H 1.09000 * 110.48635 * 24.21648 * 5 3 2 32 32 H 1.08995 * 110.59954 * 261.62598 * 5 3 2 33 33 H 1.08996 * 110.75428 * 203.74567 * 6 5 3 34 34 H 1.08992 * 110.75757 * 80.37033 * 6 5 3 35 35 H 1.08996 * 110.48575 * 279.26089 * 7 6 5 36 36 H 1.09008 * 110.59418 * 156.67621 * 7 6 5 37 37 H 1.08995 * 109.47485 * 32.71743 * 13 12 10 38 38 H 1.09005 * 109.46792 * 152.71281 * 13 12 10 39 39 H 0.96999 * 120.00176 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.47473 * 149.99386 * 22 12 10 41 41 H 1.09001 * 109.47073 * 29.99763 * 22 12 10 42 42 H 1.08997 * 109.46645 * 184.99783 * 23 22 12 43 43 H 1.09000 * 109.46787 * 305.00043 * 23 22 12 44 44 H 1.09003 * 109.47235 * 60.00358 * 25 24 23 45 45 H 1.09003 * 109.46938 * 180.02562 * 25 24 23 46 46 H 1.08997 * 109.47349 * 299.99532 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5831 2.0005 -0.8172 5 6 1.7147 2.1180 1.3481 6 6 2.9461 3.0140 1.6310 7 6 4.1244 2.1452 1.1249 8 6 3.5722 1.4597 -0.1420 9 1 3.8594 2.0257 -1.0281 10 6 4.0978 0.0506 -0.2366 11 8 4.2226 -0.6188 0.7670 12 7 4.4292 -0.4659 -1.4366 13 6 4.3892 0.3779 -2.6335 14 6 3.0019 0.3502 -3.2215 15 1 2.2500 -0.3008 -2.8007 16 6 2.6926 1.1562 -4.2965 17 7 3.6084 1.9487 -4.8092 18 14 0.9728 1.1224 -5.0250 19 1 0.1259 2.1326 -4.3415 20 1 1.0432 1.4349 -6.4751 21 1 0.3823 -0.2272 -4.8375 22 6 4.8294 -1.8711 -1.5440 23 6 6.3444 -1.9852 -1.3629 24 8 6.6962 -1.5923 -0.0348 25 6 8.0968 -1.6622 0.2401 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.5995 1.3694 2.1320 32 1 0.8127 2.7243 1.2655 33 1 3.0428 3.2119 2.6984 34 1 2.8835 3.9454 1.0684 35 1 4.3984 1.4011 1.8727 36 1 4.9828 2.7699 0.8773 37 1 4.6497 1.4017 -2.3652 38 1 5.1023 0.0019 -3.3671 39 1 3.3909 2.5155 -5.5657 40 1 4.5509 -2.2541 -2.5257 41 1 4.3263 -2.4522 -0.7712 42 1 6.6536 -3.0168 -1.5307 43 1 6.8459 -1.3344 -2.0792 44 1 8.6344 -1.0044 -0.4429 45 1 8.2814 -1.3488 1.2676 46 1 8.4428 -2.6870 0.1055 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590629595.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:43 Heat of formation + Delta-G solvation = -102.475193 kcal Electronic energy + Delta-G solvation = -24743.516108 eV Core-core repulsion = 21439.519673 eV Total energy + Delta-G solvation = -3303.996435 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.79547 -37.65770 -36.56122 -34.78381 -32.60467 -32.57458 -30.22656 -28.28082 -27.09382 -26.89752 -25.88581 -23.07039 -22.77536 -22.04915 -20.25105 -19.75040 -17.42476 -16.55687 -16.36235 -16.10935 -15.56056 -15.27841 -14.82269 -14.60004 -14.41803 -13.92552 -13.82621 -13.45738 -12.73772 -12.61369 -12.40464 -12.27200 -11.97649 -11.71260 -11.61533 -11.38691 -11.25524 -11.05296 -10.88998 -10.82220 -10.67535 -10.60220 -10.52699 -10.22969 -10.17442 -10.09408 -9.88473 -9.73633 -9.48381 -9.28105 -8.68257 -8.43585 -7.53744 -6.14514 -4.20993 3.23338 3.31021 3.33830 3.68403 4.05586 4.23815 4.37198 5.05715 5.15236 5.18662 5.24642 5.41915 5.50486 5.62858 5.66780 5.68357 5.71512 5.76429 5.81889 5.84800 5.88710 6.08529 6.09154 6.11095 6.14310 6.15919 6.26063 6.32266 6.37667 6.44803 6.48224 6.54728 6.70035 6.72664 6.80067 6.88773 6.99313 7.07615 7.30097 7.53610 7.71342 7.83805 8.11290 8.51264 8.88005 9.30136 9.47655 10.91852 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.011651 B = 0.008185 C = 0.005853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.623703 B = 3420.221025 C = 4782.864601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C -0.062 4.062 4 H 0.079 0.921 5 C -0.117 4.117 6 C -0.122 4.122 7 C -0.112 4.112 8 C -0.107 4.107 9 H 0.101 0.899 10 C 0.536 3.464 11 O -0.557 6.557 12 N -0.600 5.600 13 C 0.238 3.762 14 C -0.529 4.529 15 H 0.064 0.936 16 C 0.066 3.934 17 N -0.893 5.893 18 Si 0.890 3.110 19 H -0.279 1.279 20 H -0.287 1.287 21 H -0.273 1.273 22 C 0.123 3.877 23 C 0.045 3.955 24 O -0.365 6.365 25 C 0.032 3.968 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.040 0.960 38 H 0.028 0.972 39 H 0.264 0.736 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.046 0.954 43 H 0.048 0.952 44 H 0.034 0.966 45 H 0.079 0.921 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.714 -2.094 7.758 8.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C -0.081 4.081 4 H 0.097 0.903 5 C -0.155 4.155 6 C -0.159 4.159 7 C -0.150 4.150 8 C -0.129 4.129 9 H 0.119 0.881 10 C 0.325 3.675 11 O -0.436 6.436 12 N -0.331 5.331 13 C 0.118 3.882 14 C -0.568 4.568 15 H 0.082 0.918 16 C -0.137 4.137 17 N -0.531 5.531 18 Si 0.717 3.283 19 H -0.205 1.205 20 H -0.213 1.213 21 H -0.198 1.198 22 C -0.001 4.001 23 C -0.033 4.033 24 O -0.283 6.283 25 C -0.065 4.065 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.053 0.947 45 H 0.097 0.903 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 1.677 -2.256 8.236 8.703 hybrid contribution -0.594 0.025 -1.064 1.219 sum 1.082 -2.232 7.173 7.589 Atomic orbital electron populations 1.21747 0.96824 1.00692 1.01104 1.21861 0.95037 0.96550 1.03128 1.21475 0.92991 0.96488 0.97097 0.90286 1.22461 0.97262 0.98278 0.97498 1.22452 0.95347 0.98162 0.99988 1.22343 0.97175 0.98476 0.97004 1.21992 0.96237 0.94509 1.00117 0.88104 1.20132 0.75984 0.88746 0.82673 1.90572 1.55086 1.62296 1.35653 1.48130 1.65544 1.10252 1.09139 1.19400 0.97242 0.90212 0.81307 1.21519 0.96836 1.23849 1.14547 0.91806 1.24904 0.97087 0.95109 0.96583 1.69920 1.33347 1.25354 1.24515 0.86620 0.84710 0.78604 0.78337 1.20455 1.21252 1.19796 1.21263 0.91781 0.84842 1.02231 1.23053 0.97790 0.97858 0.84588 1.88160 1.21878 1.88256 1.30006 1.22661 0.83496 0.99227 1.01151 0.92975 0.93576 0.93393 0.90420 0.91591 0.91769 0.92296 0.92152 0.91782 0.90385 0.92287 0.94239 0.95381 0.92662 0.89280 0.90486 0.93601 0.93373 0.94726 0.90268 0.94909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.77 37.16 0.36 -1.97 16 2 C -0.13 -2.38 4.12 -26.73 -0.11 -2.49 16 3 C -0.06 -1.12 2.92 -89.50 -0.26 -1.38 16 4 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 5 C -0.12 -1.80 5.56 -25.07 -0.14 -1.94 16 6 C -0.12 -1.78 6.91 -24.73 -0.17 -1.95 16 7 C -0.11 -1.91 6.32 -25.07 -0.16 -2.07 16 8 C -0.11 -2.09 2.82 -90.65 -0.26 -2.35 16 9 H 0.10 2.15 5.65 -51.93 -0.29 1.85 16 10 C 0.54 11.32 4.13 -10.99 -0.05 11.28 16 11 O -0.56 -12.68 13.34 -7.64 -0.10 -12.79 16 12 N -0.60 -12.61 2.26 -175.06 -0.40 -13.00 16 13 C 0.24 5.56 4.82 -5.19 -0.03 5.53 16 14 C -0.53 -13.18 9.10 -34.44 -0.31 -13.50 16 15 H 0.06 1.61 6.23 -52.49 -0.33 1.29 16 16 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -24.18 13.29 55.43 0.74 -23.44 16 18 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 C 0.12 2.28 5.83 -4.04 -0.02 2.25 16 23 C 0.05 0.75 6.28 37.16 0.23 0.98 16 24 O -0.36 -6.69 9.27 -48.43 -0.45 -7.13 16 25 C 0.03 0.44 11.01 101.05 1.11 1.55 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.68 7.53 -51.93 -0.39 0.29 16 29 H 0.08 1.63 5.27 -51.93 -0.27 1.36 16 30 H 0.07 1.29 6.82 -51.93 -0.35 0.93 16 31 H 0.06 0.98 7.75 -51.93 -0.40 0.58 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.43 7.01 -51.93 -0.36 1.07 16 36 H 0.06 0.95 8.14 -51.92 -0.42 0.52 16 37 H 0.04 0.98 6.06 -51.93 -0.31 0.67 16 38 H 0.03 0.68 8.05 -51.93 -0.42 0.27 16 39 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.09 1.54 8.07 -51.93 -0.42 1.12 16 41 H 0.08 1.47 7.50 -51.93 -0.39 1.08 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 356.03 15.07 5.37 5.37 Total: -1.00 -28.41 356.03 -7.91 -36.33 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -8.16 Total: 3.85 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 0.11 Total: -4.44 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.34 Total: -36.44 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.55 Total: -19.92 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.41 -7.91 -36.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590629595.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.149 kcal (2) G-P(sol) polarization free energy of solvation -28.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds