Wall clock time and date at job start Tue Mar 31 2020 05:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99896 * 2 1 4 4 C 1.52999 * 109.46728 * 90.00451 * 3 2 1 5 5 C 1.52997 * 109.47317 * 59.99947 * 4 3 2 6 6 C 1.53000 * 109.47060 * 59.99960 * 5 4 3 7 7 C 1.50706 * 109.46735 * 180.02562 * 6 5 4 8 8 O 1.21273 * 120.00140 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99767 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00054 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47194 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47415 * 300.00058 * 11 10 9 13 13 C 1.52996 * 109.47165 * 60.00080 * 11 10 9 14 14 C 1.50703 * 109.47084 * 180.02562 * 11 10 9 15 15 H 1.07995 * 120.00280 * 0.02562 * 14 11 10 16 16 C 1.37880 * 119.99788 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00327 * 0.02562 * 16 14 11 18 18 Si 1.86806 * 119.99600 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47141 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47071 * 120.00301 * 18 16 14 21 21 H 1.48498 * 109.46651 * 239.99793 * 18 16 14 22 22 C 1.53002 * 109.47233 * 299.99657 * 6 5 4 23 23 C 1.52997 * 109.46817 * 60.00194 * 22 6 5 24 24 H 1.09005 * 109.47176 * 59.99740 * 1 2 3 25 25 H 1.08998 * 109.47365 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46799 * 299.99649 * 1 2 3 27 27 H 1.09000 * 109.47187 * 330.00207 * 3 2 1 28 28 H 1.08996 * 109.46929 * 299.99051 * 4 3 2 29 29 H 1.09002 * 109.46716 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.47153 * 299.99641 * 5 4 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 5 4 3 32 32 H 1.08992 * 109.47399 * 59.99823 * 6 5 4 33 33 H 0.97005 * 119.99680 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.47245 * 300.00495 * 10 9 7 35 35 H 1.09002 * 109.47021 * 59.99873 * 10 9 7 36 36 H 1.09000 * 109.46986 * 59.99882 * 12 11 10 37 37 H 1.08996 * 109.47407 * 179.97438 * 12 11 10 38 38 H 1.09002 * 109.47070 * 300.00053 * 12 11 10 39 39 H 1.09001 * 109.46997 * 59.99740 * 13 11 10 40 40 H 1.09000 * 109.47380 * 179.97438 * 13 11 10 41 41 H 1.08999 * 109.47631 * 300.00497 * 13 11 10 42 42 H 0.97000 * 120.00354 * 180.02562 * 17 16 14 43 43 H 1.08993 * 109.47662 * 180.02562 * 22 6 5 44 44 H 1.09002 * 109.47075 * 300.00932 * 22 6 5 45 45 H 1.09002 * 109.47153 * 60.00231 * 23 22 6 46 46 H 1.09001 * 109.47289 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 2.2177 1.7713 1.4425 5 6 3.1516 0.7973 2.1637 6 6 4.5002 0.7551 1.4424 7 6 5.4198 -0.2048 2.1524 8 8 5.0346 -0.7965 3.1384 9 7 6.6706 -0.4049 1.6921 10 6 7.5648 -1.3376 2.3826 11 6 8.9133 -1.3798 1.6613 12 6 8.7059 -1.8457 0.2188 13 6 9.5357 0.0178 1.6613 14 6 9.8329 -2.3398 2.3713 15 1 9.4897 -2.8673 3.2489 16 6 11.1125 -2.5446 1.9003 17 7 11.5307 -1.9018 0.8319 18 14 12.2521 -3.7350 2.7800 19 1 11.5470 -4.3250 3.9462 20 1 12.6551 -4.8165 1.8455 21 1 13.4603 -3.0094 3.2478 22 6 4.2928 0.2892 -0.0002 23 6 3.3590 1.2633 -0.7213 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.3450 1.9994 -0.5138 28 1 1.2569 1.8014 1.9563 29 1 2.6615 2.7669 1.4425 30 1 2.7082 -0.1985 2.1637 31 1 3.2997 1.1294 3.1912 32 1 4.9435 1.7508 1.4424 33 1 6.9788 0.0687 0.9037 34 1 7.7122 -1.0060 3.4104 35 1 7.1215 -2.3334 2.3822 36 1 8.0406 -1.1517 -0.2950 37 1 9.6666 -1.8753 -0.2952 38 1 8.2625 -2.8414 0.2187 39 1 9.6836 0.3497 2.6890 40 1 10.4967 -0.0123 1.1478 41 1 8.8705 0.7119 1.1477 42 1 12.4308 -2.0462 0.5004 43 1 5.2535 0.2588 -0.5139 44 1 3.8493 -0.7065 -0.0001 45 1 3.8023 2.2590 -0.7213 46 1 3.2108 0.9312 -1.7489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590916480.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:05 Heat of formation + Delta-G solvation = -113.293036 kcal Electronic energy + Delta-G solvation = -23456.787939 eV Core-core repulsion = 20152.322407 eV Total energy + Delta-G solvation = -3304.465532 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.07201 -38.65241 -36.46120 -35.65405 -33.23962 -31.14592 -30.80497 -30.11942 -26.72538 -25.70036 -25.65642 -24.99510 -23.03634 -22.61654 -20.23061 -19.44627 -18.72956 -17.00424 -16.33482 -16.17183 -15.72983 -15.52414 -15.02809 -14.66498 -14.54359 -13.81657 -13.72264 -13.57256 -12.97186 -12.92251 -12.68747 -12.42344 -12.29640 -12.18491 -12.05841 -11.58498 -11.33181 -11.20710 -11.16740 -10.85385 -10.76377 -10.64390 -10.48214 -10.41669 -10.35575 -10.17764 -9.60398 -9.59975 -9.42048 -9.08316 -8.74315 -8.41250 -8.23794 -6.00217 -4.09998 3.16858 3.28498 3.37012 3.41913 3.61174 3.86133 4.42144 4.55237 4.62323 4.77506 5.01457 5.07518 5.13137 5.16180 5.24932 5.26587 5.34248 5.41586 5.45621 5.48365 5.64183 5.71548 5.88502 5.90128 6.12912 6.18166 6.29496 6.31946 6.38006 6.48862 6.55057 6.83524 6.85496 6.97823 7.05240 7.06029 7.11757 7.39198 7.58468 7.71835 8.03696 8.12565 8.22070 8.41601 8.81807 8.91747 9.55787 11.01203 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.035961 B = 0.003354 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.431698 B = 8345.503724 C = 8502.816716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.377 6.377 3 C 0.087 3.913 4 C -0.141 4.141 5 C -0.092 4.092 6 C -0.106 4.106 7 C 0.508 3.492 8 O -0.554 6.554 9 N -0.717 5.717 10 C 0.131 3.869 11 C 0.056 3.944 12 C -0.130 4.130 13 C -0.130 4.130 14 C -0.505 4.505 15 H 0.058 0.942 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.285 1.285 22 C -0.107 4.107 23 C -0.113 4.113 24 H 0.038 0.962 25 H 0.083 0.917 26 H 0.039 0.961 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.397 0.603 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.006 0.994 37 H 0.085 0.915 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.085 0.915 41 H 0.006 0.994 42 H 0.259 0.741 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.647 9.255 -4.853 20.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.295 6.295 3 C 0.029 3.971 4 C -0.178 4.178 5 C -0.129 4.129 6 C -0.127 4.127 7 C 0.294 3.706 8 O -0.432 6.432 9 N -0.368 5.368 10 C 0.009 3.991 11 C 0.055 3.945 12 C -0.187 4.187 13 C -0.188 4.188 14 C -0.543 4.543 15 H 0.076 0.924 16 C -0.135 4.135 17 N -0.525 5.525 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.145 4.145 23 C -0.151 4.151 24 H 0.056 0.944 25 H 0.102 0.898 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.232 0.768 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.025 0.975 37 H 0.103 0.897 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.104 0.896 41 H 0.025 0.975 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.616 8.659 -4.249 20.084 hybrid contribution 0.631 -0.146 0.094 0.654 sum -16.985 8.513 -4.155 19.448 Atomic orbital electron populations 1.22762 0.81677 1.02615 0.99551 1.87982 1.19009 1.27580 1.94967 1.22160 0.94808 0.84624 0.95490 1.22052 1.00202 0.99508 0.96079 1.21189 0.92849 1.00686 0.98215 1.21335 0.96127 0.99114 0.96160 1.20540 0.82535 0.82933 0.84616 1.90646 1.75646 1.50012 1.26924 1.46327 1.13127 1.45560 1.31739 1.21684 0.90676 0.91030 0.95723 1.18353 0.89142 0.94239 0.92770 1.21818 1.01393 0.97199 0.98339 1.21825 1.02265 0.95590 0.99130 1.21047 0.97146 1.24046 1.12092 0.92413 1.24881 0.97851 0.95875 0.94936 1.69813 1.17869 1.41971 1.22858 0.86525 0.80707 0.80949 0.79771 1.19756 1.21066 1.21088 1.21427 0.99657 1.00322 0.93052 1.21635 0.93867 1.00293 0.99272 0.94379 0.89806 0.94248 0.92393 0.91797 0.91086 0.90497 0.91578 0.89193 0.76818 0.92904 0.92867 0.97498 0.89660 0.95470 0.95503 0.89614 0.97510 0.93100 0.91341 0.90464 0.90519 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.38 -4.21 9.00 -35.23 -0.32 -4.53 16 3 C 0.09 0.81 2.92 -26.73 -0.08 0.74 16 4 C -0.14 -1.34 5.63 -26.73 -0.15 -1.49 16 5 C -0.09 -1.17 4.35 -26.73 -0.12 -1.28 16 6 C -0.11 -1.40 2.53 -91.77 -0.23 -1.63 16 7 C 0.51 9.06 7.15 -10.98 -0.08 8.99 16 8 O -0.55 -12.00 15.98 5.56 0.09 -11.91 16 9 N -0.72 -13.07 4.85 -60.30 -0.29 -13.36 16 10 C 0.13 2.87 4.50 -4.05 -0.02 2.85 16 11 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 12 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 13 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 14 C -0.50 -13.41 8.01 -34.44 -0.28 -13.68 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 17 N -0.89 -23.78 9.35 55.43 0.52 -23.26 16 18 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C -0.11 -1.27 4.95 -26.73 -0.13 -1.40 16 23 C -0.11 -1.05 5.66 -26.73 -0.15 -1.21 16 24 H 0.04 0.25 8.09 -51.93 -0.42 -0.17 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.04 0.29 7.87 -51.93 -0.41 -0.12 16 27 H 0.06 0.44 7.79 -51.93 -0.40 0.04 16 28 H 0.06 0.56 7.87 -51.93 -0.41 0.16 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 1.15 7.64 -51.93 -0.40 0.75 16 31 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.40 6.52 5.58 -40.82 -0.23 6.29 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 37 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 41 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 42 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 43 H 0.07 0.78 7.56 -51.93 -0.39 0.39 16 44 H 0.08 1.07 7.68 -51.93 -0.40 0.67 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 351.75 15.07 5.30 5.30 Total: -1.00 -29.54 351.75 -7.60 -37.14 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -8.17 Total: 3.95 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 0.29 Total: -9.22 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.23 Total: -36.62 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.23 Total: -16.44 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.54 -7.60 -37.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590916480.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.156 kcal (2) G-P(sol) polarization free energy of solvation -29.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds