Wall clock time and date at job start Tue Mar 31 2020 05:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46953 * 2 1 4 4 C 1.53001 * 109.46882 * 179.71644 * 3 2 1 5 5 H 1.09007 * 109.46919 * 324.68990 * 4 3 2 6 6 C 1.50700 * 109.46870 * 204.69549 * 4 3 2 7 7 O 1.21286 * 120.00041 * 332.20363 * 6 4 3 8 8 N 1.34776 * 120.00281 * 152.21351 * 6 4 3 9 9 C 1.47024 * 125.64457 * 354.75939 * 8 6 4 10 10 C 1.54369 * 107.28622 * 181.13376 * 9 8 6 11 11 C 1.55158 * 102.92143 * 22.14171 * 10 9 8 12 12 O 1.42896 * 111.00482 * 82.64029 * 11 10 9 13 13 C 1.50707 * 111.00459 * 206.45454 * 11 10 9 14 14 H 1.07994 * 120.00070 * 115.41331 * 13 11 10 15 15 C 1.37875 * 119.99653 * 295.14227 * 13 11 10 16 16 N 1.31513 * 120.00509 * 0.27589 * 15 13 11 17 17 Si 1.86805 * 119.99772 * 180.27543 * 15 13 11 18 18 H 1.48500 * 109.47198 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47198 * 119.99949 * 17 15 13 20 20 H 1.48500 * 109.47058 * 239.99809 * 17 15 13 21 21 C 1.47424 * 125.65262 * 174.81015 * 8 6 4 22 22 C 1.52999 * 109.47273 * 84.69257 * 4 3 2 23 23 C 1.53003 * 109.47012 * 298.14516 * 22 4 3 24 24 C 1.52995 * 109.47074 * 58.14620 * 22 4 3 25 25 H 1.08998 * 109.46914 * 60.00529 * 1 2 3 26 26 H 1.09006 * 109.46964 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46886 * 300.00279 * 1 2 3 28 28 H 1.09000 * 109.47140 * 239.99234 * 2 1 3 29 29 H 1.08998 * 109.46914 * 119.99471 * 2 1 3 30 30 H 1.08994 * 109.47301 * 59.71344 * 3 2 1 31 31 H 1.09001 * 109.46553 * 299.71149 * 3 2 1 32 32 H 1.08993 * 109.88393 * 300.51720 * 9 8 6 33 33 H 1.09001 * 109.88037 * 61.68420 * 9 8 6 34 34 H 1.09001 * 110.70729 * 263.79611 * 10 9 8 35 35 H 1.09003 * 110.75611 * 140.50674 * 10 9 8 36 36 H 0.96700 * 114.00181 * 64.58601 * 12 11 10 37 37 H 0.96999 * 120.00516 * 180.02562 * 16 15 13 38 38 H 1.09005 * 110.36493 * 36.98643 * 21 8 6 39 39 H 1.08997 * 110.36676 * 274.67309 * 21 8 6 40 40 H 1.09004 * 109.46658 * 178.14631 * 22 4 3 41 41 H 1.08998 * 109.46814 * 71.52313 * 23 22 4 42 42 H 1.08993 * 109.47013 * 191.52452 * 23 22 4 43 43 H 1.08996 * 109.47086 * 311.52163 * 23 22 4 44 44 H 1.08998 * 109.46966 * 61.11779 * 24 22 4 45 45 H 1.09005 * 109.46888 * 181.11382 * 24 22 4 46 46 H 1.08998 * 109.47543 * 301.11398 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0071 5 1 3.9305 0.6048 0.6042 6 6 4.0695 2.7344 0.6010 7 8 3.3960 3.7397 0.5194 8 7 5.2648 2.7727 1.2225 9 6 6.1301 1.6140 1.4877 10 6 7.3731 2.1329 2.2418 11 6 6.8741 3.4672 2.8565 12 8 6.1661 3.2362 4.0761 13 6 8.0184 4.4238 3.0726 14 1 8.0571 5.3524 2.5226 15 6 9.0130 4.1160 3.9765 16 7 8.9659 2.9851 4.6462 17 14 10.4274 5.3052 4.2499 18 1 10.2484 6.4956 3.3803 19 1 10.4492 5.7297 5.6727 20 1 11.7093 4.6354 3.9135 21 6 5.9206 3.9831 1.7500 22 6 4.0867 1.3067 -1.4265 23 6 3.6179 -0.0262 -2.0135 24 6 3.5430 2.4574 -2.2757 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.6725 1.9578 0.8873 31 1 1.6808 1.9548 -0.8926 32 1 5.5995 0.8884 2.1041 33 1 6.4321 1.1539 0.5469 34 1 8.1968 2.3110 1.5505 35 1 7.6694 1.4346 3.0247 36 1 6.7117 2.8667 4.7837 37 1 9.6654 2.7687 5.2824 38 1 5.1802 4.6618 2.1733 39 1 6.4869 4.4812 0.9631 40 1 5.1763 1.3398 -1.4246 41 1 2.5459 0.0184 -2.2056 42 1 4.1467 -0.2181 -2.9470 43 1 3.8272 -0.8284 -1.3059 44 1 3.8933 3.4060 -1.8691 45 1 3.8951 2.3496 -3.3017 46 1 2.4533 2.4361 -2.2615 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846432.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:25 Heat of formation + Delta-G solvation = -107.712274 kcal Electronic energy + Delta-G solvation = -23989.647927 eV Core-core repulsion = 20685.424395 eV Total energy + Delta-G solvation = -3304.223532 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.01992 -37.87461 -36.45751 -34.27813 -33.43356 -32.18891 -30.10976 -29.17656 -28.19886 -27.30571 -25.68711 -24.35635 -22.31384 -21.27389 -20.23745 -19.50841 -18.27868 -17.18130 -16.55310 -16.35715 -15.29842 -14.97397 -14.66240 -14.27956 -14.24170 -13.92093 -13.54011 -13.32008 -12.99083 -12.84526 -12.51029 -12.34814 -12.03848 -11.90543 -11.78207 -11.70178 -11.62965 -11.33488 -11.31481 -11.09865 -10.90599 -10.89868 -10.72692 -10.61917 -10.46710 -10.32934 -10.05116 -10.03000 -9.41688 -9.13635 -8.69275 -8.21451 -7.92921 -6.30481 -4.38149 3.13268 3.17640 3.26878 3.31279 3.61017 4.25640 4.70149 4.76705 4.83533 4.97429 5.02069 5.09761 5.18156 5.32270 5.48092 5.53273 5.56759 5.62964 5.64614 5.73562 5.77848 5.83697 5.86614 5.89483 5.95549 5.96859 6.03447 6.04915 6.11818 6.25849 6.29739 6.33720 6.40193 6.45674 6.57162 6.67897 6.89235 7.00257 7.29355 7.32762 7.72304 8.00343 8.20810 8.64069 8.73412 9.30579 9.42569 10.77181 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.029943 B = 0.004029 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.886238 B = 6948.734750 C = 7097.698519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.142 4.142 3 C -0.105 4.105 4 C -0.100 4.100 5 H 0.087 0.913 6 C 0.529 3.471 7 O -0.554 6.554 8 N -0.607 5.607 9 C 0.101 3.899 10 C -0.137 4.137 11 C 0.248 3.752 12 O -0.583 6.583 13 C -0.534 4.534 14 H 0.065 0.935 15 C 0.072 3.928 16 N -0.897 5.897 17 Si 0.903 3.097 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.119 3.881 22 C -0.082 4.082 23 C -0.149 4.149 24 C -0.152 4.152 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.382 0.618 37 H 0.268 0.732 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.051 0.949 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.542 -8.601 -10.267 15.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.179 4.179 3 C -0.143 4.143 4 C -0.121 4.121 5 H 0.105 0.895 6 C 0.317 3.683 7 O -0.433 6.433 8 N -0.339 5.339 9 C -0.022 4.022 10 C -0.176 4.176 11 C 0.207 3.793 12 O -0.392 6.392 13 C -0.573 4.573 14 H 0.083 0.917 15 C -0.130 4.130 16 N -0.536 5.536 17 Si 0.730 3.270 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.003 4.003 22 C -0.101 4.101 23 C -0.206 4.206 24 C -0.209 4.209 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.233 0.767 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.070 0.930 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.364 -7.934 -10.562 16.193 hybrid contribution 1.485 0.243 0.668 1.647 sum -7.879 -7.691 -9.895 14.803 Atomic orbital electron populations 1.21758 0.96137 1.01170 1.01794 1.22019 0.95796 0.97163 1.02884 1.21572 0.92565 0.96580 1.03543 1.21405 0.97407 0.96185 0.97096 0.89463 1.20180 0.79789 0.90415 0.77924 1.90638 1.55877 1.36710 1.60071 1.48634 1.18520 1.10529 1.56250 1.22160 0.92939 0.88455 0.98689 1.23195 0.94144 1.00851 0.99426 1.19602 0.87504 0.90505 0.81668 1.86126 1.41841 1.87050 1.24209 1.21516 1.06192 1.05464 1.24118 0.91663 1.24987 0.97952 0.95235 0.94819 1.69655 1.34945 1.22653 1.26377 0.86365 0.81407 0.81008 0.78217 1.19572 1.20758 1.20825 1.22351 0.95360 0.86903 0.95681 1.20968 1.00384 0.95913 0.92803 1.22098 1.01576 0.96408 1.00509 1.21964 1.01477 0.98530 0.98894 0.92893 0.93034 0.92851 0.90293 0.92229 0.91499 0.90653 0.92537 0.92958 0.91410 0.89757 0.76687 0.92225 0.91187 0.91254 0.90933 0.91548 0.92779 0.92351 0.91998 0.92971 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.03 16 2 C -0.14 -1.44 5.42 -26.73 -0.14 -1.59 16 3 C -0.10 -1.36 3.99 -26.73 -0.11 -1.47 16 4 C -0.10 -1.40 1.72 -91.77 -0.16 -1.56 16 5 H 0.09 1.17 6.91 -51.93 -0.36 0.81 16 6 C 0.53 9.96 5.98 -10.99 -0.07 9.90 16 7 O -0.55 -12.11 15.61 5.55 0.09 -12.03 16 8 N -0.61 -12.10 3.33 -170.49 -0.57 -12.67 16 9 C 0.10 1.81 6.10 -3.04 -0.02 1.80 16 10 C -0.14 -2.93 5.52 -24.87 -0.14 -3.06 16 11 C 0.25 5.99 0.88 -89.62 -0.08 5.91 16 12 O -0.58 -15.01 13.17 -35.23 -0.46 -15.47 16 13 C -0.53 -13.89 8.25 -34.44 -0.28 -14.18 16 14 H 0.07 1.70 7.78 -52.49 -0.41 1.29 16 15 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 16 N -0.90 -22.93 10.76 55.43 0.60 -22.34 16 17 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 C 0.12 2.69 6.11 -2.53 -0.02 2.67 16 22 C -0.08 -0.99 2.72 -90.62 -0.25 -1.23 16 23 C -0.15 -1.38 7.52 37.16 0.28 -1.10 16 24 C -0.15 -1.89 8.56 37.16 0.32 -1.57 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.71 4.15 -51.93 -0.22 0.49 16 29 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16 30 H 0.07 1.01 7.70 -51.93 -0.40 0.61 16 31 H 0.08 0.96 5.46 -51.93 -0.28 0.68 16 32 H 0.06 0.97 7.91 -51.93 -0.41 0.56 16 33 H 0.05 0.81 7.93 -51.93 -0.41 0.40 16 34 H 0.07 1.45 8.03 -51.93 -0.42 1.03 16 35 H 0.08 1.88 7.69 -51.93 -0.40 1.48 16 36 H 0.38 9.83 7.24 45.56 0.33 10.16 16 37 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 38 H 0.07 1.70 7.99 -51.93 -0.41 1.29 16 39 H 0.07 1.52 8.03 -51.93 -0.42 1.10 16 40 H 0.07 0.92 7.93 -51.93 -0.41 0.51 16 41 H 0.07 0.58 5.92 -51.93 -0.31 0.27 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.51 7.74 -51.93 -0.40 0.11 16 44 H 0.06 0.94 6.84 -51.93 -0.35 0.59 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.74 5.90 -51.93 -0.31 0.43 16 LS Contribution 350.00 15.07 5.27 5.27 Total: -1.00 -28.04 350.00 -7.74 -35.78 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -7.26 Total: 11.14 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -0.38 Total: -4.77 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.03 Total: -35.00 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.38 Total: -27.50 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.04 -7.74 -35.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846432.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.934 kcal (2) G-P(sol) polarization free energy of solvation -28.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds