Wall clock time and date at job start Tue Mar 31 2020 05:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46953 * 2 1 4 4 C 1.53001 * 109.46882 * 179.71644 * 3 2 1 5 5 H 1.09007 * 109.46919 * 324.68990 * 4 3 2 6 6 C 1.50700 * 109.46870 * 204.69549 * 4 3 2 7 7 O 1.21286 * 120.00041 * 332.20363 * 6 4 3 8 8 N 1.34776 * 120.00281 * 152.21351 * 6 4 3 9 9 C 1.47024 * 125.64457 * 354.75939 * 8 6 4 10 10 C 1.54369 * 107.28622 * 181.13376 * 9 8 6 11 11 C 1.55158 * 102.92143 * 22.14171 * 10 9 8 12 12 O 1.42896 * 111.00482 * 82.64029 * 11 10 9 13 13 C 1.50707 * 111.00459 * 206.45454 * 11 10 9 14 14 H 1.07994 * 120.00070 * 115.41331 * 13 11 10 15 15 C 1.37875 * 119.99653 * 295.14227 * 13 11 10 16 16 N 1.31513 * 120.00509 * 0.27589 * 15 13 11 17 17 Si 1.86805 * 119.99772 * 180.27543 * 15 13 11 18 18 H 1.48500 * 109.47198 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47198 * 119.99949 * 17 15 13 20 20 H 1.48500 * 109.47058 * 239.99809 * 17 15 13 21 21 C 1.47424 * 125.65262 * 174.81015 * 8 6 4 22 22 C 1.52999 * 109.47273 * 84.69257 * 4 3 2 23 23 C 1.53003 * 109.47012 * 298.14516 * 22 4 3 24 24 C 1.52995 * 109.47074 * 58.14620 * 22 4 3 25 25 H 1.08998 * 109.46914 * 60.00529 * 1 2 3 26 26 H 1.09006 * 109.46964 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46886 * 300.00279 * 1 2 3 28 28 H 1.09000 * 109.47140 * 239.99234 * 2 1 3 29 29 H 1.08998 * 109.46914 * 119.99471 * 2 1 3 30 30 H 1.08994 * 109.47301 * 59.71344 * 3 2 1 31 31 H 1.09001 * 109.46553 * 299.71149 * 3 2 1 32 32 H 1.08993 * 109.88393 * 300.51720 * 9 8 6 33 33 H 1.09001 * 109.88037 * 61.68420 * 9 8 6 34 34 H 1.09001 * 110.70729 * 263.79611 * 10 9 8 35 35 H 1.09003 * 110.75611 * 140.50674 * 10 9 8 36 36 H 0.96700 * 114.00181 * 64.58601 * 12 11 10 37 37 H 0.96999 * 120.00516 * 180.02562 * 16 15 13 38 38 H 1.09005 * 110.36493 * 36.98643 * 21 8 6 39 39 H 1.08997 * 110.36676 * 274.67309 * 21 8 6 40 40 H 1.09004 * 109.46658 * 178.14631 * 22 4 3 41 41 H 1.08998 * 109.46814 * 71.52313 * 23 22 4 42 42 H 1.08993 * 109.47013 * 191.52452 * 23 22 4 43 43 H 1.08996 * 109.47086 * 311.52163 * 23 22 4 44 44 H 1.08998 * 109.46966 * 61.11779 * 24 22 4 45 45 H 1.09005 * 109.46888 * 181.11382 * 24 22 4 46 46 H 1.08998 * 109.47543 * 301.11398 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0071 5 1 3.9305 0.6048 0.6042 6 6 4.0695 2.7344 0.6010 7 8 3.3960 3.7397 0.5194 8 7 5.2648 2.7727 1.2225 9 6 6.1301 1.6140 1.4877 10 6 7.3731 2.1329 2.2418 11 6 6.8741 3.4672 2.8565 12 8 6.1661 3.2362 4.0761 13 6 8.0184 4.4238 3.0726 14 1 8.0571 5.3524 2.5226 15 6 9.0130 4.1160 3.9765 16 7 8.9659 2.9851 4.6462 17 14 10.4274 5.3052 4.2499 18 1 10.2484 6.4956 3.3803 19 1 10.4492 5.7297 5.6727 20 1 11.7093 4.6354 3.9135 21 6 5.9206 3.9831 1.7500 22 6 4.0867 1.3067 -1.4265 23 6 3.6179 -0.0262 -2.0135 24 6 3.5430 2.4574 -2.2757 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.6725 1.9578 0.8873 31 1 1.6808 1.9548 -0.8926 32 1 5.5995 0.8884 2.1041 33 1 6.4321 1.1539 0.5469 34 1 8.1968 2.3110 1.5505 35 1 7.6694 1.4346 3.0247 36 1 6.7117 2.8667 4.7837 37 1 9.6654 2.7687 5.2824 38 1 5.1802 4.6618 2.1733 39 1 6.4869 4.4812 0.9631 40 1 5.1763 1.3398 -1.4246 41 1 2.5459 0.0184 -2.2056 42 1 4.1467 -0.2181 -2.9470 43 1 3.8272 -0.8284 -1.3059 44 1 3.8933 3.4060 -1.8691 45 1 3.8951 2.3496 -3.3017 46 1 2.4533 2.4361 -2.2615 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592846432.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:24 Heat of formation + Delta-G solvation = -124.957103 kcal Electronic energy + Delta-G solvation = -23990.395719 eV Core-core repulsion = 20685.424395 eV Total energy + Delta-G solvation = -3304.971324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.45460 -39.42834 -37.82404 -36.09255 -34.29401 -34.19146 -31.71660 -30.48018 -29.78516 -28.15745 -27.29446 -25.68646 -23.87064 -22.12750 -21.76737 -21.05910 -19.66668 -19.08671 -18.04561 -17.37637 -16.98753 -16.78845 -16.18344 -15.90000 -15.49094 -15.15091 -14.82111 -14.48197 -14.26930 -14.03528 -13.88174 -13.72159 -13.50336 -13.23651 -13.15435 -13.06170 -12.88230 -12.73328 -12.66116 -12.51799 -12.45420 -12.26543 -12.10742 -11.88469 -11.76693 -11.66927 -11.34660 -11.25739 -10.90897 -10.73018 -10.57073 -10.15852 -9.55271 -8.25867 -6.40631 1.39995 1.44455 1.54358 1.65594 2.08762 2.39601 2.99030 3.50924 3.71206 3.81270 3.82199 4.00808 4.14995 4.25874 4.26231 4.32183 4.34419 4.39075 4.58498 4.59885 4.62228 4.67206 4.76877 4.86318 4.87015 4.89331 4.97402 5.05512 5.12226 5.13295 5.16258 5.19181 5.27503 5.31408 5.40198 5.42818 5.43436 5.51639 5.52451 5.64620 5.75954 6.06159 6.61796 6.68087 7.20110 7.30489 7.40768 8.80573 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.029943 B = 0.004029 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.886238 B = 6948.734750 C = 7097.698519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.135 4.135 3 C -0.101 4.101 4 C -0.091 4.091 5 H 0.102 0.898 6 C 0.521 3.479 7 O -0.592 6.592 8 N -0.612 5.612 9 C 0.108 3.892 10 C -0.127 4.127 11 C 0.234 3.766 12 O -0.595 6.595 13 C -0.562 4.562 14 H 0.054 0.946 15 C 0.037 3.963 16 N -0.908 5.908 17 Si 0.960 3.040 18 H -0.275 1.275 19 H -0.281 1.281 20 H -0.273 1.273 21 C 0.124 3.876 22 C -0.079 4.079 23 C -0.144 4.144 24 C -0.150 4.150 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.379 0.621 37 H 0.272 0.728 38 H 0.041 0.959 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.025 0.975 45 H 0.072 0.928 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.419 -10.873 -11.705 18.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.172 4.172 3 C -0.139 4.139 4 C -0.112 4.112 5 H 0.120 0.880 6 C 0.312 3.688 7 O -0.473 6.473 8 N -0.345 5.345 9 C -0.014 4.014 10 C -0.166 4.166 11 C 0.194 3.806 12 O -0.404 6.404 13 C -0.601 4.601 14 H 0.072 0.928 15 C -0.164 4.164 16 N -0.547 5.547 17 Si 0.786 3.214 18 H -0.199 1.199 19 H -0.206 1.206 20 H -0.198 1.198 21 C 0.001 3.999 22 C -0.098 4.098 23 C -0.200 4.200 24 C -0.207 4.207 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.060 0.940 28 H 0.118 0.882 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.229 0.771 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.044 0.956 45 H 0.091 0.909 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.244 -10.234 -12.008 18.286 hybrid contribution 1.422 1.020 1.141 2.089 sum -7.822 -9.215 -10.868 16.254 Atomic orbital electron populations 1.21769 0.95492 1.02176 1.01510 1.21999 0.96345 0.94930 1.03921 1.21555 0.91736 0.98490 1.02129 1.21497 0.98017 0.93318 0.98368 0.88018 1.21191 0.78811 0.91828 0.76965 1.90613 1.56762 1.38646 1.61281 1.48746 1.19258 1.09995 1.56454 1.22194 0.91223 0.87720 1.00295 1.22974 0.95474 0.98952 0.99158 1.19785 0.87444 0.92019 0.81393 1.86115 1.42267 1.87171 1.24874 1.21716 1.07494 1.05785 1.25071 0.92810 1.25599 0.99745 0.96632 0.94412 1.69710 1.35450 1.23298 1.26220 0.85473 0.79015 0.79084 0.77814 1.19929 1.20631 1.19850 1.22104 0.94562 0.87827 0.95428 1.21006 1.00135 0.97499 0.91165 1.22067 1.02240 0.94485 1.01258 1.21948 1.01762 0.97008 0.99963 0.92432 0.91347 0.94009 0.88221 0.92140 0.94474 0.90657 0.91216 0.89292 0.91697 0.90786 0.77059 0.91849 0.94083 0.91178 0.91261 0.90687 0.91305 0.91145 0.95616 0.90930 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.91 71.98 0.71 -1.76 16 2 C -0.14 -2.38 5.42 30.60 0.17 -2.21 16 3 C -0.10 -2.51 3.99 30.60 0.12 -2.38 16 4 C -0.09 -2.41 1.72 -11.54 -0.02 -2.43 16 5 H 0.10 2.42 6.91 -2.38 -0.02 2.40 16 6 C 0.52 19.74 5.98 87.66 0.52 20.27 16 7 O -0.59 -26.82 15.61 -3.05 -0.05 -26.87 16 8 N -0.61 -24.43 3.33 -811.71 -2.70 -27.13 16 9 C 0.11 3.71 6.10 86.74 0.53 4.24 16 10 C -0.13 -5.35 5.52 31.80 0.18 -5.18 16 11 C 0.23 11.53 0.88 -10.15 -0.01 11.52 16 12 O -0.60 -31.40 13.17 -148.98 -1.96 -33.36 16 13 C -0.56 -29.84 8.25 25.60 0.21 -29.63 16 14 H 0.05 2.89 7.78 -2.91 -0.02 2.87 16 15 C 0.04 1.91 5.29 84.65 0.45 2.36 16 16 N -0.91 -46.33 10.76 21.45 0.23 -46.10 16 17 Si 0.96 41.19 29.54 68.60 2.03 43.21 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 21 C 0.12 5.80 6.11 86.85 0.53 6.33 16 22 C -0.08 -1.71 2.72 -10.79 -0.03 -1.73 16 23 C -0.14 -2.05 7.52 71.98 0.54 -1.51 16 24 C -0.15 -3.53 8.56 71.98 0.62 -2.91 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.10 1.37 4.15 -2.39 -0.01 1.36 16 29 H 0.06 1.08 8.11 -2.39 -0.02 1.06 16 30 H 0.04 1.13 7.70 -2.39 -0.02 1.11 16 31 H 0.08 1.84 5.46 -2.39 -0.01 1.83 16 32 H 0.07 2.24 7.91 -2.39 -0.02 2.22 16 33 H 0.09 2.46 7.93 -2.39 -0.02 2.44 16 34 H 0.06 2.74 8.03 -2.39 -0.02 2.72 16 35 H 0.07 3.26 7.69 -2.39 -0.02 3.24 16 36 H 0.38 19.95 7.24 -74.06 -0.54 19.42 16 37 H 0.27 13.15 8.31 -92.71 -0.77 12.38 16 38 H 0.04 2.11 7.99 -2.38 -0.02 2.09 16 39 H 0.07 3.20 8.03 -2.39 -0.02 3.18 16 40 H 0.07 1.56 7.93 -2.38 -0.02 1.54 16 41 H 0.07 0.96 5.92 -2.39 -0.01 0.95 16 42 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.07 0.88 7.74 -2.39 -0.02 0.86 16 44 H 0.02 0.78 6.84 -2.39 -0.02 0.76 16 45 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 46 H 0.07 1.48 5.90 -2.39 -0.01 1.47 16 Total: -1.00 -62.13 350.00 2.49 -59.64 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: 0.42 Total: 35.65 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 4.52 Total: -5.04 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: -2.47 Total: -73.23 kcal Atomic # 8 Polarization: -58.22 SS G_CDS: -2.01 Total: -60.23 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.21 kcal Total: -62.13 2.49 -59.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846432.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.315 kcal (2) G-P(sol) polarization free energy of solvation -62.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds