Wall clock time and date at job start Tue Mar 31 2020 05:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47382 * 2 1 4 4 C 1.52998 * 109.47020 * 186.35982 * 3 2 1 5 5 H 1.09001 * 109.47466 * 54.66043 * 4 3 2 6 6 C 1.50703 * 109.47041 * 174.66009 * 4 3 2 7 7 O 1.21281 * 119.99644 * 5.20728 * 6 4 3 8 8 N 1.34775 * 120.00027 * 185.20188 * 6 4 3 9 9 C 1.47018 * 125.64835 * 4.73432 * 8 6 4 10 10 C 1.54329 * 107.26945 * 181.01919 * 9 8 6 11 11 C 1.55157 * 102.94323 * 22.19757 * 10 9 8 12 12 O 1.42901 * 111.00487 * 82.56665 * 11 10 9 13 13 C 1.50696 * 111.00610 * 206.37881 * 11 10 9 14 14 H 1.08002 * 119.99493 * 118.54040 * 13 11 10 15 15 C 1.37874 * 120.00291 * 298.54738 * 13 11 10 16 16 N 1.31519 * 120.00044 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 119.99889 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47188 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46652 * 120.00374 * 17 15 13 20 20 H 1.48502 * 109.47259 * 240.00037 * 17 15 13 21 21 C 1.47425 * 125.64854 * 184.42662 * 8 6 4 22 22 C 1.53000 * 109.47358 * 294.66087 * 4 3 2 23 23 C 1.53001 * 109.47133 * 84.22832 * 22 4 3 24 24 C 1.52998 * 109.47054 * 324.22531 * 22 4 3 25 25 H 1.09003 * 109.47348 * 300.00322 * 1 2 3 26 26 H 1.09001 * 109.47484 * 59.99840 * 1 2 3 27 27 H 1.08998 * 109.47487 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47348 * 239.99678 * 2 1 3 29 29 H 1.09007 * 109.46665 * 120.00461 * 2 1 3 30 30 H 1.09000 * 109.47059 * 66.36431 * 3 2 1 31 31 H 1.08999 * 109.47047 * 306.36143 * 3 2 1 32 32 H 1.08994 * 109.88870 * 300.43737 * 9 8 6 33 33 H 1.09005 * 109.88144 * 61.60914 * 9 8 6 34 34 H 1.09005 * 110.71346 * 140.55662 * 10 9 8 35 35 H 1.08998 * 110.72241 * 263.65039 * 10 9 8 36 36 H 0.96704 * 113.99825 * 61.45108 * 12 11 10 37 37 H 0.96992 * 119.99971 * 180.02562 * 16 15 13 38 38 H 1.08996 * 110.36979 * 274.74984 * 21 8 6 39 39 H 1.09003 * 110.36533 * 37.06915 * 21 8 6 40 40 H 1.09001 * 109.47119 * 204.23249 * 22 4 3 41 41 H 1.08996 * 109.47219 * 54.25478 * 23 22 4 42 42 H 1.08998 * 109.46934 * 294.25141 * 23 22 4 43 43 H 1.09000 * 109.47096 * 174.25745 * 23 22 4 44 44 H 1.08998 * 109.47245 * 186.07062 * 24 22 4 45 45 H 1.08999 * 109.47856 * 306.07619 * 24 22 4 46 46 H 1.09005 * 109.46904 * 66.07453 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5616 1.4453 -0.1598 5 1 3.8343 0.8829 -1.0528 6 6 4.0502 2.8648 -0.2914 7 8 3.2732 3.7876 -0.1662 8 7 5.3505 3.1089 -0.5482 9 6 6.3761 2.0909 -0.8192 10 6 7.7134 2.8323 -1.0287 11 6 7.4781 4.1846 -0.3054 12 8 7.7055 4.0602 1.0999 13 6 8.3411 5.2701 -0.8953 14 1 7.8835 6.1354 -1.3518 15 6 9.7146 5.1585 -0.8524 16 7 10.2717 4.1045 -0.2970 17 14 10.7843 6.5038 -1.5843 18 1 9.9201 7.5734 -2.1446 19 1 11.6546 7.0751 -0.5253 20 1 11.6286 5.9324 -2.6640 21 6 5.9788 4.4411 -0.6103 22 6 4.2046 0.7964 1.0676 23 6 4.2223 -0.7232 0.8906 24 6 3.3965 1.1551 2.3163 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 1.7727 1.9223 0.9415 31 1 1.5867 1.9881 -0.8276 32 1 6.4578 1.4118 0.0294 33 1 6.1164 1.5334 -1.7192 34 1 8.5344 2.2849 -0.5655 35 1 7.9059 2.9879 -2.0902 36 1 8.6088 3.8034 1.3309 37 1 11.2380 4.0262 -0.2665 38 1 5.8597 4.8708 -1.6048 39 1 5.5463 5.0999 0.1428 40 1 5.2257 1.1613 1.1785 41 1 4.7096 -0.9736 -0.0516 42 1 3.1995 -1.0999 0.8821 43 1 4.7703 -1.1787 1.7154 44 1 3.9125 0.7843 3.2019 45 1 3.2925 2.2381 2.3832 46 1 2.4087 0.6984 2.2534 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846434.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:29 Heat of formation + Delta-G solvation = -102.526019 kcal Electronic energy + Delta-G solvation = -24151.907820 eV Core-core repulsion = 20847.909181 eV Total energy + Delta-G solvation = -3303.998639 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.07441 -37.86111 -36.63689 -34.32382 -33.17927 -32.23216 -30.05759 -29.19128 -28.28110 -27.21723 -25.73895 -24.35983 -22.34762 -21.17779 -20.03896 -19.61014 -18.48498 -17.20311 -16.38705 -16.26281 -15.26949 -15.05607 -14.93052 -14.24314 -14.09654 -14.00054 -13.51220 -13.14856 -13.02990 -12.86115 -12.51417 -12.35231 -12.10496 -11.91140 -11.74746 -11.59951 -11.53144 -11.35067 -11.29206 -11.00868 -10.92727 -10.85423 -10.74832 -10.60389 -10.46398 -10.43005 -10.05191 -9.82254 -9.40376 -9.14284 -8.69106 -8.22418 -7.93564 -6.29650 -4.37374 3.13332 3.17929 3.27163 3.31840 3.61653 4.26177 4.73925 4.77075 4.87087 4.98095 5.00936 5.10975 5.20550 5.28207 5.53018 5.56010 5.59093 5.61996 5.68528 5.74438 5.77851 5.83312 5.89144 5.90665 5.96113 6.00136 6.06333 6.11126 6.12803 6.27335 6.30350 6.36740 6.44746 6.50674 6.57265 6.68423 6.90361 6.99700 7.29282 7.33840 7.72387 8.01868 8.20386 8.65060 8.72401 9.29755 9.38484 10.77731 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.034270 B = 0.004119 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.841117 B = 6796.124577 C = 7090.204308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.135 4.135 3 C -0.102 4.102 4 C -0.098 4.098 5 H 0.089 0.911 6 C 0.526 3.474 7 O -0.557 6.557 8 N -0.606 5.606 9 C 0.096 3.904 10 C -0.136 4.136 11 C 0.248 3.752 12 O -0.582 6.582 13 C -0.534 4.534 14 H 0.065 0.935 15 C 0.073 3.927 16 N -0.895 5.895 17 Si 0.902 3.098 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.120 3.880 22 C -0.092 4.092 23 C -0.160 4.160 24 C -0.150 4.150 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.380 0.620 37 H 0.267 0.733 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.057 0.943 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.583 -11.208 0.639 15.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.172 4.172 3 C -0.140 4.140 4 C -0.119 4.119 5 H 0.107 0.893 6 C 0.315 3.685 7 O -0.436 6.436 8 N -0.339 5.339 9 C -0.027 4.027 10 C -0.175 4.175 11 C 0.208 3.792 12 O -0.390 6.390 13 C -0.573 4.573 14 H 0.083 0.917 15 C -0.130 4.130 16 N -0.534 5.534 17 Si 0.729 3.271 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.002 4.002 22 C -0.111 4.111 23 C -0.217 4.217 24 C -0.207 4.207 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.230 0.770 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.530 -10.642 0.774 15.709 hybrid contribution 1.481 0.475 -0.572 1.657 sum -10.048 -10.167 0.202 14.296 Atomic orbital electron populations 1.21785 0.96174 1.01157 1.01869 1.21971 0.95555 0.97258 1.02384 1.21506 0.92675 0.96246 1.03544 1.21406 0.97087 0.93515 0.99916 0.89254 1.20238 0.80773 0.91100 0.76407 1.90637 1.54237 1.46611 1.52115 1.48602 1.07407 1.09492 1.68352 1.22290 0.89900 0.91463 0.99008 1.23177 0.93498 0.98986 1.01837 1.19641 0.88604 0.91335 0.79638 1.86140 1.35677 1.92524 1.24673 1.21491 0.91203 1.06129 1.38429 0.91723 1.24983 0.97948 0.95748 0.94305 1.69725 1.11349 1.27955 1.44409 0.86374 0.80114 0.81739 0.78830 1.19586 1.20788 1.20842 1.22389 0.93684 0.83479 1.00600 1.21161 1.00559 0.95634 0.93736 1.22268 1.02764 0.94988 1.01676 1.21977 0.99919 1.01974 0.96788 0.92797 0.92865 0.93048 0.92136 0.90413 0.90604 0.91669 0.91952 0.93081 0.89583 0.91468 0.77047 0.92321 0.91222 0.91362 0.89832 0.92646 0.91033 0.92691 0.92894 0.92367 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.15 0.37 -0.98 16 2 C -0.13 -1.31 4.36 -26.74 -0.12 -1.43 16 3 C -0.10 -1.31 3.47 -26.73 -0.09 -1.40 16 4 C -0.10 -1.38 1.57 -91.77 -0.14 -1.53 16 5 H 0.09 1.16 7.77 -51.93 -0.40 0.75 16 6 C 0.53 9.99 6.93 -10.98 -0.08 9.91 16 7 O -0.56 -12.33 16.26 5.56 0.09 -12.24 16 8 N -0.61 -12.04 3.24 -170.38 -0.55 -12.59 16 9 C 0.10 1.72 6.14 -3.06 -0.02 1.70 16 10 C -0.14 -2.89 5.37 -24.89 -0.13 -3.03 16 11 C 0.25 5.94 0.87 -89.51 -0.08 5.86 16 12 O -0.58 -14.61 13.17 -35.23 -0.46 -15.07 16 13 C -0.53 -13.86 8.27 -34.44 -0.28 -14.15 16 14 H 0.06 1.69 7.79 -52.49 -0.41 1.28 16 15 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 16 N -0.90 -22.74 10.76 55.43 0.60 -22.14 16 17 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 21 C 0.12 2.72 6.08 -2.41 -0.01 2.70 16 22 C -0.09 -1.19 2.34 -90.62 -0.21 -1.41 16 23 C -0.16 -1.62 8.72 37.16 0.32 -1.30 16 24 C -0.15 -1.88 7.79 37.16 0.29 -1.59 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.71 3.89 -51.93 -0.20 0.50 16 30 H 0.08 1.04 6.05 -51.93 -0.31 0.73 16 31 H 0.06 0.91 8.02 -51.93 -0.42 0.49 16 32 H 0.06 1.05 5.81 -51.93 -0.30 0.75 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.90 7.54 -51.93 -0.39 1.51 16 35 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 36 H 0.38 9.50 7.57 45.56 0.34 9.84 16 37 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 38 H 0.07 1.54 8.04 -51.93 -0.42 1.13 16 39 H 0.07 1.65 8.08 -51.93 -0.42 1.23 16 40 H 0.08 1.27 5.31 -51.93 -0.28 1.00 16 41 H 0.05 0.54 7.99 -51.93 -0.42 0.13 16 42 H 0.07 0.64 4.39 -51.93 -0.23 0.41 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.87 7.77 -51.93 -0.40 0.46 16 46 H 0.06 0.67 5.29 -51.93 -0.27 0.39 16 LS Contribution 346.06 15.07 5.21 5.21 Total: -1.00 -27.90 346.06 -7.46 -35.36 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -7.04 Total: 11.26 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -0.28 Total: -4.87 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.04 Total: -34.73 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.37 Total: -27.31 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.90 -7.46 -35.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846434.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.170 kcal (2) G-P(sol) polarization free energy of solvation -27.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds