Wall clock time and date at job start Tue Mar 31 2020 07:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47212 * 2 1 4 4 H 1.08998 * 109.47464 * 306.19064 * 3 2 1 5 5 C 1.53001 * 109.46985 * 66.18866 * 3 2 1 6 6 C 1.53003 * 109.47268 * 186.09411 * 5 3 2 7 7 C 1.53006 * 109.46820 * 66.31282 * 6 5 3 8 8 C 1.52996 * 109.47106 * 186.30998 * 6 5 3 9 9 C 1.50704 * 109.47133 * 186.18923 * 3 2 1 10 10 O 1.21276 * 120.00069 * 259.34303 * 9 3 2 11 11 N 1.34777 * 120.00038 * 79.34744 * 9 3 2 12 12 C 1.47423 * 125.64442 * 354.69612 * 11 9 3 13 13 C 1.54913 * 104.83122 * 204.09403 * 12 11 9 14 14 C 1.55405 * 101.66648 * 323.07891 * 13 12 11 15 15 O 1.42895 * 110.69305 * 277.04644 * 14 13 12 16 16 C 1.50697 * 110.85609 * 153.69744 * 14 13 12 17 17 H 1.08003 * 120.00082 * 246.54488 * 16 14 13 18 18 C 1.37880 * 119.99840 * 66.53492 * 16 14 13 19 19 N 1.31509 * 120.00171 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 119.99737 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47346 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47237 * 120.00545 * 20 18 16 23 23 H 1.48508 * 109.46875 * 240.00260 * 20 18 16 24 24 C 1.47020 * 125.64759 * 174.65886 * 11 9 3 25 25 H 1.09003 * 109.46980 * 303.98690 * 1 2 3 26 26 H 1.08992 * 109.47293 * 63.98900 * 1 2 3 27 27 H 1.09008 * 109.46796 * 183.99214 * 1 2 3 28 28 H 1.09006 * 109.47179 * 240.00400 * 2 1 3 29 29 H 1.09001 * 109.47543 * 120.00705 * 2 1 3 30 30 H 1.08996 * 109.47467 * 306.09706 * 5 3 2 31 31 H 1.09009 * 109.46932 * 66.10171 * 5 3 2 32 32 H 1.08997 * 109.47051 * 306.31712 * 6 5 3 33 33 H 1.09000 * 109.47078 * 64.32029 * 7 6 5 34 34 H 1.08994 * 109.47059 * 184.31902 * 7 6 5 35 35 H 1.09002 * 109.47052 * 304.32014 * 7 6 5 36 36 H 1.09005 * 109.47342 * 60.00715 * 8 6 5 37 37 H 1.08999 * 109.47006 * 180.02562 * 8 6 5 38 38 H 1.08997 * 109.47748 * 300.00287 * 8 6 5 39 39 H 1.09000 * 110.37328 * 322.93388 * 12 11 9 40 40 H 1.09002 * 110.36828 * 85.15175 * 12 11 9 41 41 H 1.08999 * 111.00322 * 81.06786 * 13 12 11 42 42 H 1.08994 * 111.00902 * 204.91760 * 13 12 11 43 43 H 0.96696 * 114.00601 * 293.37214 * 15 14 13 44 44 H 0.97004 * 120.00353 * 179.97438 * 19 18 16 45 45 H 1.08999 * 109.88089 * 298.38628 * 24 11 9 46 46 H 1.08998 * 109.88419 * 59.40354 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5891 1.9873 -0.8293 5 6 1.6609 2.1174 1.3197 6 6 2.0352 3.5997 1.2605 7 6 1.1675 4.3034 0.2150 8 6 1.8026 4.2397 2.6306 9 6 3.5392 1.4452 -0.1532 10 8 4.2478 1.6033 0.8183 11 7 4.0926 1.2720 -1.3698 12 6 3.3598 0.9611 -2.6106 13 6 4.4026 0.2705 -3.5247 14 6 5.6939 1.0655 -3.1846 15 8 5.7522 2.2794 -3.9362 16 6 6.9210 0.2257 -3.4294 17 1 7.5406 -0.0800 -2.5993 18 6 7.2526 -0.1527 -4.7132 19 7 6.4983 0.2197 -5.7240 20 14 8.7732 -1.1943 -5.0165 21 1 9.4451 -1.4779 -3.7229 22 1 8.3772 -2.4731 -5.6589 23 1 9.7061 -0.4601 -5.9089 24 6 5.5270 1.3626 -1.6795 25 1 -0.3633 0.5745 0.8521 26 1 -0.3633 0.4506 -0.9235 27 1 -0.3633 -1.0253 0.0716 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 0.5876 2.0199 1.4826 31 1 2.1977 1.6397 2.1394 32 1 3.0857 3.6986 0.9868 33 1 0.1239 4.2711 0.5277 34 1 1.4857 5.3413 0.1178 35 1 1.2749 3.7990 -0.7453 36 1 2.4208 3.7384 3.3754 37 1 2.0688 5.2958 2.5882 38 1 0.7522 4.1408 2.9042 39 1 2.5308 0.2847 -2.4024 40 1 2.9937 1.8770 -3.0747 41 1 4.5142 -0.7820 -3.2642 42 1 4.1378 0.3853 -4.5757 43 1 5.8567 2.1479 -4.8885 44 1 6.7317 -0.0461 -6.6273 45 1 5.8916 2.3655 -1.4570 46 1 6.0799 0.6287 -1.0932 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592854505.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:59 Heat of formation + Delta-G solvation = -116.861583 kcal Electronic energy + Delta-G solvation = -24004.686741 eV Core-core repulsion = 20700.066465 eV Total energy + Delta-G solvation = -3304.620276 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.94001 -37.73447 -36.24440 -34.48924 -33.93260 -32.16810 -29.85235 -28.87701 -28.25794 -27.13282 -25.69285 -24.37419 -22.54804 -21.13143 -20.26443 -19.52003 -18.39465 -17.31259 -16.80958 -15.47145 -15.11968 -15.01549 -14.93168 -14.44782 -14.19878 -14.03255 -13.51476 -13.35617 -12.98428 -12.69133 -12.42077 -12.23506 -12.14301 -12.07496 -11.89415 -11.56696 -11.44601 -11.37951 -11.34862 -11.16589 -11.01752 -10.90551 -10.61678 -10.47956 -10.45332 -10.37743 -10.22681 -10.12682 -9.43163 -9.15876 -8.68438 -8.21904 -7.96128 -6.31737 -4.38703 3.11455 3.17495 3.26669 3.31549 3.59533 4.25395 4.65704 4.80607 4.86798 4.96283 5.05696 5.15055 5.19204 5.40264 5.47757 5.50441 5.55076 5.64651 5.67966 5.77428 5.79722 5.83013 5.87771 5.90484 5.96785 6.00886 6.03502 6.06212 6.12657 6.24664 6.25763 6.36319 6.45131 6.47752 6.53771 6.71460 6.91114 6.98578 7.28366 7.32800 7.71842 7.99313 8.17484 8.63413 8.71015 9.29945 9.43941 10.76172 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.025696 B = 0.004272 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.392158 B = 6552.990488 C = 6818.216083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.105 4.105 4 H 0.091 0.909 5 C -0.096 4.096 6 C -0.102 4.102 7 C -0.149 4.149 8 C -0.142 4.142 9 C 0.527 3.473 10 O -0.553 6.553 11 N -0.608 5.608 12 C 0.095 3.905 13 C -0.137 4.137 14 C 0.248 3.752 15 O -0.587 6.587 16 C -0.534 4.534 17 H 0.065 0.935 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.903 3.097 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.281 1.281 24 C 0.122 3.878 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.386 0.614 44 H 0.268 0.732 45 H 0.058 0.942 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.926 2.093 7.735 15.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.126 4.126 4 H 0.109 0.891 5 C -0.133 4.133 6 C -0.120 4.120 7 C -0.206 4.206 8 C -0.199 4.199 9 C 0.315 3.685 10 O -0.432 6.432 11 N -0.341 5.341 12 C -0.028 4.028 13 C -0.176 4.176 14 C 0.208 3.792 15 O -0.397 6.397 16 C -0.572 4.572 17 H 0.083 0.917 18 C -0.130 4.130 19 N -0.538 5.538 20 Si 0.730 3.270 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.207 1.207 24 C 0.000 4.000 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.238 0.762 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.656 2.441 8.716 15.560 hybrid contribution 0.857 -0.854 -1.020 1.582 sum -11.799 1.588 7.697 14.176 Atomic orbital electron populations 1.21818 0.95191 1.01705 1.02023 1.21514 0.96240 0.94747 1.03019 1.21424 0.92590 0.98110 1.00517 0.89051 1.21535 1.00694 0.94826 0.96275 1.21156 1.00932 0.94575 0.95366 1.21912 0.99384 1.00240 0.99049 1.21776 1.01039 1.00252 0.96835 1.20191 0.90153 0.76497 0.81625 1.90635 1.63862 1.50988 1.37731 1.48653 1.09398 1.68521 1.07511 1.22526 0.95824 0.99195 0.85256 1.23350 0.95911 0.99404 0.98924 1.19475 0.92108 0.82399 0.85217 1.86094 1.96276 1.32574 1.24767 1.21598 1.09900 1.32222 0.93500 0.91658 1.24987 0.96866 0.95343 0.95816 1.69581 1.38286 1.46382 0.99569 0.86356 0.82414 0.79735 0.78462 1.19564 1.20805 1.20720 1.22053 0.79625 1.00954 0.97374 0.92317 0.92587 0.92602 0.91123 0.91417 0.91369 0.90857 0.90495 0.92958 0.92965 0.92592 0.92668 0.93037 0.93127 0.91980 0.92123 0.91537 0.89743 0.76220 0.92153 0.92312 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.78 37.16 0.36 -1.04 16 2 C -0.12 -1.42 5.22 -26.73 -0.14 -1.56 16 3 C -0.11 -1.45 1.41 -91.77 -0.13 -1.58 16 4 H 0.09 1.19 5.93 -51.93 -0.31 0.88 16 5 C -0.10 -1.20 3.71 -26.73 -0.10 -1.30 16 6 C -0.10 -1.31 2.76 -90.62 -0.25 -1.56 16 7 C -0.15 -1.68 9.07 37.16 0.34 -1.34 16 8 C -0.14 -1.56 9.19 37.16 0.34 -1.22 16 9 C 0.53 9.76 6.28 -10.98 -0.07 9.69 16 10 O -0.55 -11.91 15.38 5.56 0.09 -11.82 16 11 N -0.61 -12.00 3.33 -170.52 -0.57 -12.57 16 12 C 0.09 1.70 6.39 -2.53 -0.02 1.68 16 13 C -0.14 -2.92 5.69 -24.44 -0.14 -3.06 16 14 C 0.25 5.99 0.86 -89.80 -0.08 5.91 16 15 O -0.59 -14.81 13.09 -35.23 -0.46 -15.27 16 16 C -0.53 -13.95 8.22 -34.44 -0.28 -14.24 16 17 H 0.07 1.72 7.53 -52.48 -0.40 1.33 16 18 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 19 N -0.90 -22.90 10.73 55.43 0.59 -22.31 16 20 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 C 0.12 2.78 6.22 -3.06 -0.02 2.76 16 25 H 0.06 0.51 6.32 -51.93 -0.33 0.18 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.07 0.91 6.14 -51.93 -0.32 0.59 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.71 6.28 -51.93 -0.33 0.38 16 31 H 0.07 1.03 7.67 -51.92 -0.40 0.63 16 32 H 0.08 1.24 6.65 -51.93 -0.35 0.90 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.66 6.31 -51.93 -0.33 0.33 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.94 5.76 -51.93 -0.30 0.64 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 42 H 0.08 1.86 7.80 -51.93 -0.40 1.46 16 43 H 0.39 9.81 6.98 45.56 0.32 10.12 16 44 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 45 H 0.06 1.39 8.07 -51.93 -0.42 0.98 16 46 H 0.07 1.64 7.63 -51.93 -0.40 1.24 16 LS Contribution 352.16 15.07 5.31 5.31 Total: -1.00 -27.73 352.16 -7.64 -35.37 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -7.31 Total: 11.27 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -0.27 Total: -5.13 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.03 Total: -34.88 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.38 Total: -27.09 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.73 -7.64 -35.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854505.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.492 kcal (2) G-P(sol) polarization free energy of solvation -27.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds