Wall clock time and date at job start Tue Mar 31 2020 07:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47536 * 2 1 4 4 H 1.09002 * 109.46761 * 54.01054 * 3 2 1 5 5 C 1.53000 * 109.46767 * 294.01181 * 3 2 1 6 6 C 1.53006 * 109.46765 * 174.81504 * 5 3 2 7 7 C 1.53006 * 109.46845 * 174.02301 * 6 5 3 8 8 C 1.52992 * 109.47305 * 294.02751 * 6 5 3 9 9 C 1.50697 * 109.47231 * 174.01196 * 3 2 1 10 10 O 1.21283 * 120.00260 * 93.38104 * 9 3 2 11 11 N 1.34775 * 119.99827 * 273.37652 * 9 3 2 12 12 C 1.47020 * 125.65008 * 354.85404 * 11 9 3 13 13 C 1.54372 * 107.28606 * 181.05908 * 12 11 9 14 14 C 1.55151 * 102.92563 * 22.13701 * 13 12 11 15 15 O 1.42902 * 111.00299 * 82.63830 * 14 13 12 16 16 C 1.50696 * 111.00610 * 206.45297 * 14 13 12 17 17 H 1.08005 * 120.00122 * 115.41826 * 16 14 13 18 18 C 1.37870 * 120.00370 * 295.14357 * 16 14 13 19 19 N 1.31519 * 119.99880 * 0.27289 * 18 16 14 20 20 Si 1.86802 * 120.00512 * 180.27458 * 18 16 14 21 21 H 1.48502 * 109.47161 * 89.99650 * 20 18 16 22 22 H 1.48499 * 109.47263 * 210.00318 * 20 18 16 23 23 H 1.48498 * 109.46751 * 329.99893 * 20 18 16 24 24 C 1.47435 * 125.64607 * 174.81447 * 11 9 3 25 25 H 1.09005 * 109.46337 * 65.63937 * 1 2 3 26 26 H 1.08996 * 109.47479 * 185.63253 * 1 2 3 27 27 H 1.08999 * 109.47112 * 305.64050 * 1 2 3 28 28 H 1.09004 * 109.47607 * 239.99665 * 2 1 3 29 29 H 1.09003 * 109.46970 * 120.00082 * 2 1 3 30 30 H 1.08999 * 109.47345 * 294.81409 * 5 3 2 31 31 H 1.08992 * 109.47235 * 54.82137 * 5 3 2 32 32 H 1.09001 * 109.47027 * 54.03065 * 6 5 3 33 33 H 1.09001 * 109.46683 * 60.00554 * 7 6 5 34 34 H 1.08999 * 109.46825 * 180.02562 * 7 6 5 35 35 H 1.09002 * 109.47213 * 300.00089 * 7 6 5 36 36 H 1.09001 * 109.47361 * 185.60976 * 8 6 5 37 37 H 1.09006 * 109.47171 * 305.60457 * 8 6 5 38 38 H 1.08994 * 109.47347 * 65.60612 * 8 6 5 39 39 H 1.08998 * 109.88120 * 300.44082 * 12 11 9 40 40 H 1.08992 * 109.88282 * 61.60477 * 12 11 9 41 41 H 1.09001 * 110.70311 * 263.78666 * 13 12 11 42 42 H 1.09001 * 110.75816 * 140.50991 * 13 12 11 43 43 H 0.96700 * 113.99972 * 64.58936 * 15 14 13 44 44 H 0.96999 * 120.00516 * 179.97438 * 19 18 16 45 45 H 1.08997 * 110.36796 * 37.06855 * 24 11 9 46 46 H 1.09000 * 110.36287 * 274.73932 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5918 1.9863 0.8315 5 6 1.6567 2.1189 -1.3177 6 6 2.0519 3.5961 -1.2664 7 6 1.8061 4.2375 -2.6337 8 6 1.2108 4.3127 -0.2083 9 6 3.5397 1.4450 0.1482 10 8 4.2465 1.4714 -0.8371 11 7 4.0956 1.4179 1.3757 12 6 3.3646 1.4917 2.6492 13 6 4.4122 1.4524 3.7823 14 6 5.7081 1.9274 3.0736 15 8 5.7604 3.3538 3.0038 16 6 6.9318 1.3779 3.7602 17 1 7.5798 0.6887 3.2390 18 6 7.2274 1.7591 5.0518 19 7 6.4383 2.5983 5.6865 20 14 8.7484 1.0839 5.9002 21 1 9.9021 1.9808 5.6356 22 1 8.5062 1.0072 7.3633 23 1 9.0461 -0.2733 5.3760 24 6 5.5374 1.3085 1.6638 25 1 -0.3632 0.4239 -0.9363 26 1 -0.3634 -1.0226 0.1009 27 1 -0.3633 0.5988 0.8352 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.1782 1.6316 -2.1415 31 1 0.5805 2.0359 -1.4691 32 1 3.1079 3.6810 -1.0099 33 1 0.7501 4.1526 -2.8902 34 1 2.0881 5.2898 -2.5973 35 1 2.4054 3.7270 -3.3875 36 1 1.4206 5.3819 -0.2402 37 1 0.1529 4.1439 -0.4095 38 1 1.4596 3.9229 0.7787 39 1 2.8002 2.4229 2.6991 40 1 2.6891 0.6411 2.7387 41 1 4.5304 0.4379 4.1628 42 1 4.1387 2.1370 4.5853 43 1 5.8179 3.7879 3.8660 44 1 6.6460 2.8663 6.5953 45 1 6.1146 1.8711 0.9301 46 1 5.8449 0.2628 1.6689 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592854507.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:08 Heat of formation + Delta-G solvation = -118.985287 kcal Electronic energy + Delta-G solvation = -24084.073858 eV Core-core repulsion = 20779.361492 eV Total energy + Delta-G solvation = -3304.712366 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.89511 -37.71290 -36.21462 -34.37985 -33.95395 -32.18692 -29.89856 -28.91455 -28.19227 -27.08455 -25.65451 -24.41285 -22.48217 -21.14129 -20.18760 -19.57725 -18.32315 -17.25301 -16.83442 -15.41084 -15.07735 -14.97206 -14.91127 -14.39890 -14.22368 -14.00714 -13.55050 -13.35823 -12.97864 -12.62851 -12.32001 -12.29415 -12.21053 -12.13399 -11.74442 -11.68159 -11.44373 -11.33457 -11.30048 -11.19711 -11.02217 -10.89539 -10.61495 -10.48337 -10.44051 -10.34853 -10.24205 -10.03772 -9.41993 -9.15306 -8.68546 -8.21840 -7.93259 -6.30316 -4.38083 3.14041 3.19279 3.26656 3.29737 3.62086 4.25731 4.67375 4.84276 4.89631 4.98173 5.09042 5.16529 5.20550 5.41352 5.50408 5.52890 5.56839 5.68354 5.70413 5.76983 5.79451 5.85353 5.87934 5.92310 5.95508 6.02309 6.04666 6.08186 6.14222 6.27378 6.30253 6.35122 6.45347 6.49192 6.56261 6.67948 6.89205 7.00281 7.29427 7.32671 7.72327 8.00459 8.20756 8.63809 8.73587 9.30622 9.42654 10.77323 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.024828 B = 0.004405 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.494817 B = 6354.772056 C = 6678.209630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.105 4.105 4 H 0.090 0.910 5 C -0.096 4.096 6 C -0.102 4.102 7 C -0.142 4.142 8 C -0.147 4.147 9 C 0.529 3.471 10 O -0.554 6.554 11 N -0.607 5.607 12 C 0.101 3.899 13 C -0.138 4.138 14 C 0.249 3.751 15 O -0.583 6.583 16 C -0.536 4.536 17 H 0.065 0.935 18 C 0.073 3.927 19 N -0.897 5.897 20 Si 0.903 3.097 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.118 3.882 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.382 0.618 44 H 0.268 0.732 45 H 0.070 0.930 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.784 -1.251 -7.345 14.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.127 4.127 4 H 0.108 0.892 5 C -0.134 4.134 6 C -0.121 4.121 7 C -0.199 4.199 8 C -0.204 4.204 9 C 0.317 3.683 10 O -0.433 6.433 11 N -0.339 5.339 12 C -0.022 4.022 13 C -0.176 4.176 14 C 0.208 3.792 15 O -0.392 6.392 16 C -0.574 4.574 17 H 0.083 0.917 18 C -0.129 4.129 19 N -0.536 5.536 20 Si 0.730 3.270 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.003 4.003 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.233 0.767 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.505 -1.268 -8.401 15.118 hybrid contribution 0.817 -0.217 1.384 1.622 sum -11.687 -1.485 -7.016 13.712 Atomic orbital electron populations 1.21797 0.95187 1.01634 1.01989 1.21419 0.96162 0.94686 1.02774 1.21429 0.92676 0.98033 1.00527 0.89220 1.21551 1.00635 0.94864 0.96305 1.21154 1.00994 0.94550 0.95356 1.21781 1.00996 1.00306 0.96833 1.21886 0.99369 1.00198 0.98983 1.20167 0.90100 0.76171 0.81846 1.90635 1.64010 1.51373 1.37318 1.48628 1.09174 1.70906 1.05191 1.22158 0.95889 0.99540 0.84640 1.23195 0.95956 1.02362 0.96121 1.19582 0.91775 0.79565 0.88244 1.86128 1.96868 1.20220 1.35994 1.21479 1.09433 1.27869 0.98609 0.91729 1.24979 0.96748 0.94338 0.96865 1.69649 1.37461 1.33424 1.13109 0.86420 0.82686 0.79531 0.78371 1.20388 1.21047 1.19706 1.22357 0.79697 0.99862 0.98412 0.92433 0.92641 0.92539 0.91404 0.91542 0.90868 0.91414 0.90603 0.93113 0.92971 0.92718 0.92883 0.92982 0.92642 0.92571 0.92963 0.91415 0.89760 0.76701 0.92171 0.91189 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.55 37.16 0.36 -1.04 16 2 C -0.11 -1.36 5.37 -26.73 -0.14 -1.50 16 3 C -0.11 -1.48 1.64 -91.77 -0.15 -1.63 16 4 H 0.09 1.20 5.55 -51.93 -0.29 0.91 16 5 C -0.10 -1.24 3.72 -26.73 -0.10 -1.34 16 6 C -0.10 -1.38 2.78 -90.62 -0.25 -1.63 16 7 C -0.14 -1.63 9.19 37.16 0.34 -1.29 16 8 C -0.15 -1.77 8.84 37.15 0.33 -1.44 16 9 C 0.53 9.94 6.05 -10.99 -0.07 9.87 16 10 O -0.55 -12.15 15.69 5.56 0.09 -12.07 16 11 N -0.61 -12.03 3.33 -170.49 -0.57 -12.59 16 12 C 0.10 1.81 6.11 -3.04 -0.02 1.79 16 13 C -0.14 -2.92 5.52 -24.87 -0.14 -3.06 16 14 C 0.25 5.99 0.88 -89.63 -0.08 5.91 16 15 O -0.58 -14.93 13.17 -35.23 -0.46 -15.39 16 16 C -0.54 -13.90 8.25 -34.44 -0.28 -14.18 16 17 H 0.06 1.67 7.78 -52.48 -0.41 1.27 16 18 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 19 N -0.90 -22.90 10.76 55.43 0.60 -22.31 16 20 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 C 0.12 2.67 6.11 -2.52 -0.02 2.66 16 25 H 0.06 0.50 6.76 -51.93 -0.35 0.15 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.83 7.84 -51.93 -0.41 0.43 16 30 H 0.07 1.04 7.67 -51.93 -0.40 0.65 16 31 H 0.07 0.72 6.50 -51.93 -0.34 0.38 16 32 H 0.08 1.29 6.82 -51.93 -0.35 0.94 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.71 6.76 -51.93 -0.35 0.36 16 39 H 0.06 0.96 7.92 -51.93 -0.41 0.55 16 40 H 0.05 0.80 7.84 -51.93 -0.41 0.40 16 41 H 0.07 1.44 8.03 -51.93 -0.42 1.03 16 42 H 0.08 1.87 7.69 -51.93 -0.40 1.47 16 43 H 0.38 9.80 7.24 45.56 0.33 10.12 16 44 H 0.27 6.57 8.31 -40.82 -0.34 6.24 16 45 H 0.07 1.70 7.99 -51.93 -0.41 1.28 16 46 H 0.07 1.52 8.03 -51.93 -0.42 1.10 16 LS Contribution 356.98 15.07 5.38 5.38 Total: -1.00 -27.95 356.98 -7.85 -35.80 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -7.55 Total: 11.23 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -0.32 Total: -5.11 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.03 Total: -34.90 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.38 Total: -27.46 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.95 -7.85 -35.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854507.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.183 kcal (2) G-P(sol) polarization free energy of solvation -27.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds