Wall clock time and date at job start Tue Mar 31 2020 06:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47074 * 2 1 4 4 C 1.52998 * 109.47334 * 119.99589 * 2 1 3 5 5 O 1.45198 * 109.47286 * 240.00145 * 2 1 3 6 6 C 1.34230 * 117.00473 * 59.99993 * 5 2 1 7 7 O 1.20827 * 119.99185 * 0.02562 * 6 5 2 8 8 C 1.50689 * 120.00370 * 180.02562 * 6 5 2 9 9 C 1.52999 * 109.47442 * 173.71080 * 8 6 5 10 10 H 1.09002 * 109.46119 * 54.20672 * 9 8 6 11 11 C 1.53033 * 109.46186 * 294.23751 * 9 8 6 12 12 C 1.53119 * 109.27855 * 180.80025 * 11 9 8 13 13 C 1.53118 * 109.15924 * 57.65814 * 12 11 9 14 14 C 1.53044 * 109.27615 * 302.34171 * 13 12 11 15 15 N 1.46843 * 109.52038 * 59.18343 * 14 13 12 16 16 C 1.46904 * 110.99847 * 174.16090 * 15 14 13 17 17 C 1.50700 * 109.47244 * 60.25316 * 16 15 14 18 18 H 1.07998 * 119.99860 * 355.18644 * 17 16 15 19 19 C 1.37875 * 119.99886 * 175.18985 * 17 16 15 20 20 N 1.31509 * 120.00197 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99803 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47119 * 89.99880 * 21 19 17 23 23 H 1.48493 * 109.47328 * 209.99564 * 21 19 17 24 24 H 1.48501 * 109.47128 * 329.99890 * 21 19 17 25 25 H 1.09000 * 109.47023 * 60.00417 * 1 2 3 26 26 H 1.09000 * 109.47249 * 299.99889 * 1 2 3 27 27 H 1.09008 * 109.46779 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47209 * 59.99465 * 3 2 1 29 29 H 1.08999 * 109.47596 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47219 * 300.00086 * 3 2 1 31 31 H 1.09001 * 109.46839 * 60.00159 * 4 2 1 32 32 H 1.08997 * 109.47756 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.47378 * 300.00442 * 4 2 1 34 34 H 1.09003 * 109.47346 * 293.71403 * 8 6 5 35 35 H 1.09007 * 109.47512 * 53.70926 * 8 6 5 36 36 H 1.09001 * 109.50329 * 300.74223 * 11 9 8 37 37 H 1.09004 * 109.50612 * 60.86235 * 11 9 8 38 38 H 1.08998 * 109.52790 * 297.75396 * 12 11 9 39 39 H 1.09000 * 109.52504 * 177.55708 * 12 11 9 40 40 H 1.08996 * 109.50262 * 182.40605 * 13 12 11 41 41 H 1.09000 * 109.54042 * 62.30055 * 13 12 11 42 42 H 1.08997 * 109.46442 * 299.16458 * 14 13 12 43 43 H 1.09006 * 109.46004 * 179.19622 * 14 13 12 44 44 H 1.09001 * 109.46793 * 180.25254 * 16 15 14 45 45 H 1.08996 * 109.47221 * 300.24873 * 16 15 14 46 46 H 0.97005 * 120.00074 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 2.0140 -0.6844 -1.1855 6 6 1.6534 -0.1744 -2.3737 7 8 0.9567 0.8116 -2.4213 8 6 2.1174 -0.8316 -3.6479 9 6 1.4457 -0.1551 -4.8446 10 1 1.6289 0.9187 -4.8046 11 6 -0.0613 -0.4172 -4.7988 12 6 -0.7265 0.2446 -6.0087 13 6 -0.0967 -0.3050 -7.2916 14 6 1.4114 -0.0461 -7.2651 15 7 2.0010 -0.7001 -6.0900 16 6 3.4658 -0.5899 -6.1058 17 6 3.8604 0.8645 -6.0919 18 1 3.1014 1.6305 -6.1516 19 6 5.1903 1.2171 -6.0029 20 7 6.1145 0.2843 -5.9296 21 14 5.6795 3.0199 -5.9863 22 1 5.7120 3.5111 -4.5853 23 1 7.0247 3.1734 -6.5959 24 1 4.6904 3.8083 -6.7644 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 1.6766 1.9563 0.8899 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 -1.7488 1.2493 32 1 3.1300 -0.7216 1.2491 33 1 1.6767 -0.2073 2.1392 34 1 3.1995 -0.7325 -3.7347 35 1 1.8497 -1.8881 -3.6303 36 1 -0.2448 -1.4914 -4.8249 37 1 -0.4758 0.0012 -3.8815 38 1 -0.5764 1.3232 -5.9624 39 1 -1.7939 0.0239 -6.0035 40 1 -0.5364 0.1935 -8.1554 41 1 -0.2807 -1.3774 -7.3576 42 1 1.5948 1.0271 -7.2138 43 1 1.8650 -0.4490 -8.1708 44 1 3.8770 -1.0864 -5.2269 45 1 3.8561 -1.0637 -7.0065 46 1 7.0502 0.5325 -5.8666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593093396.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:24 Heat of formation + Delta-G solvation = -101.848703 kcal Electronic energy + Delta-G solvation = -24271.422201 eV Core-core repulsion = 20967.452933 eV Total energy + Delta-G solvation = -3303.969268 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.61235 -38.57094 -36.62042 -33.95171 -33.64746 -32.15202 -31.53098 -27.64907 -27.40149 -27.34586 -26.58750 -23.76924 -22.77723 -21.49491 -20.40073 -19.26761 -18.88921 -16.87934 -16.35924 -16.12179 -15.85196 -15.13364 -14.44129 -14.39381 -14.26722 -13.90162 -13.56492 -13.51000 -13.20431 -12.73858 -12.51915 -12.43256 -12.19447 -11.91177 -11.86004 -11.78294 -11.63632 -11.49175 -11.11067 -11.07475 -11.02240 -10.87013 -10.55911 -10.38030 -10.30469 -10.19542 -10.00575 -9.84489 -9.76175 -9.51226 -9.21008 -8.42995 -7.16907 -6.04287 -4.13316 2.66694 2.97634 3.26870 3.33905 3.37518 4.40110 4.74593 4.78771 4.85700 4.94940 5.14780 5.26273 5.34014 5.41523 5.44997 5.50852 5.53362 5.66609 5.69964 5.73708 5.77620 5.87088 5.95435 5.98775 6.03490 6.09742 6.20024 6.27514 6.36615 6.37751 6.42800 6.50608 6.53218 6.59198 6.73529 6.82159 6.87067 7.02144 7.25659 7.52170 7.88880 8.06040 8.20732 8.28308 8.32052 8.97287 9.54095 11.00101 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.012590 B = 0.006539 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.453306 B = 4280.768799 C = 5727.593279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.115 3.885 3 C -0.183 4.183 4 C -0.140 4.140 5 O -0.354 6.354 6 C 0.472 3.528 7 O -0.506 6.506 8 C -0.112 4.112 9 C 0.109 3.891 10 H 0.057 0.943 11 C -0.116 4.116 12 C -0.115 4.115 13 C -0.118 4.118 14 C 0.066 3.934 15 N -0.537 5.537 16 C 0.179 3.821 17 C -0.549 4.549 18 H 0.057 0.943 19 C 0.067 3.933 20 N -0.890 5.890 21 Si 0.885 3.115 22 H -0.281 1.281 23 H -0.285 1.285 24 H -0.274 1.274 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.125 0.875 35 H 0.098 0.902 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.038 0.962 43 H 0.065 0.935 44 H 0.040 0.960 45 H 0.030 0.970 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.800 -2.405 9.459 14.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.079 3.921 3 C -0.241 4.241 4 C -0.197 4.197 5 O -0.272 6.272 6 C 0.316 3.684 7 O -0.395 6.395 8 C -0.149 4.149 9 C 0.000 4.000 10 H 0.075 0.925 11 C -0.154 4.154 12 C -0.152 4.152 13 C -0.156 4.156 14 C -0.062 4.062 15 N -0.262 5.262 16 C 0.054 3.946 17 C -0.588 4.588 18 H 0.075 0.925 19 C -0.136 4.136 20 N -0.529 5.529 21 Si 0.713 3.287 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.199 1.199 25 H 0.103 0.897 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.143 0.857 35 H 0.117 0.883 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.056 0.944 43 H 0.084 0.916 44 H 0.058 0.942 45 H 0.048 0.952 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.934 -2.637 9.465 14.701 hybrid contribution 0.706 2.043 0.155 2.167 sum -10.228 -0.594 9.621 14.054 Atomic orbital electron populations 1.22473 0.94345 1.02710 1.04266 1.22084 0.94150 0.92456 0.83423 1.22488 1.01873 0.95462 1.04240 1.21833 1.02306 1.00870 0.94672 1.86582 1.70106 1.55775 1.14722 1.23879 0.76689 0.82577 0.85280 1.90510 1.35702 1.25602 1.87642 1.21601 1.04899 1.00757 0.87685 1.21066 0.92257 0.97900 0.88731 0.92517 1.21743 0.95336 1.00276 0.98024 1.21494 0.98403 0.99996 0.95344 1.21649 0.96341 1.00892 0.96688 1.21833 0.92600 0.97808 0.93980 1.62424 1.08780 1.54831 1.00135 1.19881 0.81030 0.95558 0.98131 1.21757 0.92293 0.93437 1.51311 0.92494 1.24928 0.96663 0.97082 0.94917 1.69932 1.00707 1.32293 1.49936 0.86705 0.77929 0.85845 0.78262 1.20674 1.21116 1.19939 0.89654 0.91503 0.92210 0.91543 0.91964 0.89554 0.91631 0.91473 0.90741 0.85717 0.88331 0.92256 0.91526 0.92539 0.92937 0.92714 0.91907 0.94379 0.91623 0.94245 0.95224 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 8.37 37.16 0.31 -1.87 16 2 C 0.12 1.52 1.13 -90.62 -0.10 1.42 16 3 C -0.18 -2.48 8.37 37.16 0.31 -2.17 16 4 C -0.14 -1.44 8.85 37.16 0.33 -1.11 16 5 O -0.35 -5.71 9.89 -39.26 -0.39 -6.10 16 6 C 0.47 8.31 6.88 36.00 0.25 8.56 16 7 O -0.51 -9.42 9.77 -18.75 -0.18 -9.60 16 8 C -0.11 -2.05 5.05 -27.89 -0.14 -2.19 16 9 C 0.11 2.13 1.20 -67.72 -0.08 2.05 16 10 H 0.06 1.29 6.69 -51.93 -0.35 0.94 16 11 C -0.12 -1.93 5.12 -26.65 -0.14 -2.07 16 12 C -0.11 -1.78 6.00 -26.61 -0.16 -1.94 16 13 C -0.12 -1.86 6.09 -26.65 -0.16 -2.02 16 14 C 0.07 1.29 5.05 -3.83 -0.02 1.27 16 15 N -0.54 -11.19 4.69 -228.12 -1.07 -12.26 16 16 C 0.18 4.43 4.71 -4.97 -0.02 4.40 16 17 C -0.55 -14.75 7.73 -34.44 -0.27 -15.02 16 18 H 0.06 1.56 5.85 -52.49 -0.31 1.25 16 19 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 20 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 21 Si 0.88 21.51 29.54 -169.99 -5.02 16.49 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 25 H 0.08 1.21 5.89 -51.93 -0.31 0.91 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.38 5.89 -51.93 -0.31 1.08 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.13 2.60 5.91 -51.93 -0.31 2.29 16 35 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 1.11 6.28 -51.93 -0.33 0.79 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.04 0.81 6.60 -51.93 -0.34 0.47 16 43 H 0.07 1.28 8.12 -51.93 -0.42 0.85 16 44 H 0.04 1.01 5.85 -51.93 -0.30 0.71 16 45 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 347.88 15.07 5.24 5.24 Total: -1.00 -28.66 347.88 -8.70 -37.35 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -8.02 Total: 2.67 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 0.01 Total: -8.94 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: -0.33 Total: -37.10 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.57 Total: -15.70 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.66 -8.70 -37.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593093396.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.497 kcal (2) G-P(sol) polarization free energy of solvation -28.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds