Wall clock time and date at job start Tue Mar 31 2020 06:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46963 * 2 1 4 4 H 1.09005 * 109.50914 * 305.10186 * 3 2 1 5 5 C 1.53292 * 109.51034 * 185.00333 * 3 2 1 6 6 N 1.47156 * 108.38268 * 187.77298 * 5 3 2 7 7 C 1.34774 * 120.98312 * 230.55222 * 6 5 3 8 8 O 1.21280 * 120.00385 * 175.26323 * 7 6 5 9 9 C 1.50704 * 119.99738 * 355.27136 * 7 6 5 10 10 C 1.52997 * 109.46740 * 179.97438 * 9 7 6 11 11 C 1.53007 * 109.46940 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46940 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47057 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99930 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00177 * 179.97438 * 13 12 11 16 16 N 1.31519 * 120.00022 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00180 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47093 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47092 * 120.00061 * 17 15 13 20 20 H 1.48498 * 109.47293 * 239.99964 * 17 15 13 21 21 C 1.47151 * 118.03511 * 50.53316 * 6 5 3 22 22 H 1.08999 * 109.68339 * 69.18907 * 21 6 5 23 23 C 1.53001 * 109.67960 * 189.74237 * 21 6 5 24 24 C 1.53292 * 108.38495 * 309.46554 * 21 6 5 25 25 O 1.42956 * 109.22334 * 52.30089 * 24 21 6 26 26 H 1.09000 * 109.47182 * 299.99916 * 1 2 3 27 27 H 1.09004 * 109.47084 * 59.99890 * 1 2 3 28 28 H 1.09002 * 109.47191 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47330 * 119.99394 * 2 1 3 30 30 H 1.09000 * 109.47182 * 240.00084 * 2 1 3 31 31 H 1.08997 * 109.68160 * 307.49273 * 5 3 2 32 32 H 1.08996 * 109.68400 * 68.04913 * 5 3 2 33 33 H 1.09001 * 109.47101 * 299.99079 * 9 7 6 34 34 H 1.08994 * 109.47096 * 59.99900 * 9 7 6 35 35 H 1.09001 * 109.47661 * 299.99239 * 10 9 7 36 36 H 1.09002 * 109.47442 * 60.00197 * 10 9 7 37 37 H 1.09001 * 109.47146 * 299.99504 * 11 10 9 38 38 H 1.08994 * 109.46851 * 60.00203 * 11 10 9 39 39 H 1.09008 * 109.47440 * 299.99742 * 12 11 10 40 40 H 1.09002 * 109.47442 * 60.00375 * 12 11 10 41 41 H 0.97006 * 119.99823 * 180.02562 * 16 15 13 42 42 H 1.08998 * 109.47282 * 53.27201 * 23 21 6 43 43 H 1.09004 * 109.46914 * 173.26960 * 23 21 6 44 44 H 1.09004 * 109.47157 * 293.26778 * 23 21 6 45 45 H 1.09007 * 109.51665 * 172.22775 * 24 21 6 46 46 H 1.09003 * 109.51444 * 292.32803 * 24 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6042 1.9827 -0.8406 5 6 3.5677 1.4455 -0.1260 6 7 4.0464 2.8240 0.0643 7 6 4.8911 3.3931 -0.8183 8 8 5.2069 4.5572 -0.6915 9 6 5.4431 2.5830 -1.9629 10 6 6.3683 3.4602 -2.8088 11 6 6.9293 2.6376 -3.9706 12 6 7.8539 3.5149 -4.8169 13 6 8.4070 2.7045 -5.9608 14 1 8.1273 1.6673 -6.0728 15 6 9.2700 3.2871 -6.8645 16 7 9.6111 4.5500 -6.7279 17 14 9.9561 2.2825 -8.2820 18 1 9.4223 0.8985 -8.2118 19 1 9.5530 2.9033 -9.5694 20 1 11.4380 2.2472 -8.1921 21 6 3.5752 3.5627 1.2465 22 1 4.0085 3.1285 2.1475 23 6 3.9857 5.0323 1.1331 24 6 2.0471 3.4566 1.3056 25 8 1.6673 2.0808 1.2237 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 4.0002 0.7981 0.6368 32 1 3.8551 1.0904 -1.1156 33 1 6.0045 1.7351 -1.5705 34 1 4.6217 2.2204 -2.5808 35 1 5.8067 4.3079 -3.2014 36 1 7.1898 3.8232 -2.1912 37 1 7.4911 1.7901 -3.5778 38 1 6.1081 2.2743 -4.5883 39 1 7.2918 4.3622 -5.2098 40 1 8.6753 3.8786 -4.1994 41 1 10.2180 4.9599 -7.3640 42 1 3.6436 5.4325 0.1787 43 1 3.5347 5.5993 1.9475 44 1 5.0712 5.1119 1.1924 45 1 1.6889 3.8779 2.2449 46 1 1.6114 4.0056 0.4707 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593282033.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:55 Heat of formation + Delta-G solvation = -99.209018 kcal Electronic energy + Delta-G solvation = -22797.529258 eV Core-core repulsion = 19493.674455 eV Total energy + Delta-G solvation = -3303.854803 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.83272 -38.73083 -35.40743 -34.85688 -34.53479 -32.81079 -31.97240 -29.64121 -28.34575 -26.54272 -25.66616 -23.81864 -23.10849 -21.63748 -21.28519 -19.98428 -18.97854 -17.21044 -16.68442 -16.48395 -16.18160 -15.95637 -15.32500 -14.99671 -14.67824 -14.46170 -14.08452 -13.86920 -13.66795 -13.32789 -12.66534 -12.61338 -12.57247 -12.28174 -12.07581 -12.01016 -11.62670 -11.57821 -11.48505 -11.35560 -11.30935 -10.99694 -10.93101 -10.54247 -10.47406 -10.42409 -10.39490 -9.61946 -9.34350 -9.07163 -8.93823 -8.64076 -8.31026 -5.95613 -3.98099 2.64437 2.70272 3.32836 3.34256 3.40044 3.43924 4.22925 4.43156 4.47544 4.49515 4.65698 4.71305 4.85916 4.88474 4.97929 5.07176 5.16531 5.25766 5.28469 5.33261 5.34996 5.39922 5.43797 5.51348 5.59378 5.61219 5.76317 5.82728 5.95424 5.97862 6.12440 6.14733 6.29031 6.47541 6.54310 6.79919 6.83122 7.00241 7.18573 7.27273 7.74040 7.89719 8.05806 8.19483 8.47669 9.09848 9.65663 11.15757 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.023366 B = 0.002954 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.044593 B = 9476.278936 C =10482.019276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.076 3.924 4 H 0.064 0.936 5 C 0.078 3.922 6 N -0.622 5.622 7 C 0.516 3.484 8 O -0.524 6.524 9 C -0.140 4.140 10 C -0.102 4.102 11 C -0.110 4.110 12 C 0.020 3.980 13 C -0.520 4.520 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.109 3.891 22 H 0.076 0.924 23 C -0.136 4.136 24 C 0.052 3.948 25 O -0.375 6.375 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.259 0.741 42 H 0.072 0.928 43 H 0.044 0.956 44 H 0.078 0.922 45 H 0.104 0.896 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.423 -7.456 17.955 26.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C 0.017 3.983 4 H 0.082 0.918 5 C -0.045 4.045 6 N -0.358 5.358 7 C 0.306 3.694 8 O -0.400 6.400 9 C -0.180 4.180 10 C -0.140 4.140 11 C -0.148 4.148 12 C -0.017 4.017 13 C -0.558 4.558 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 C 0.006 3.994 22 H 0.094 0.906 23 C -0.193 4.193 24 C -0.025 4.025 25 O -0.294 6.294 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.097 0.903 45 H 0.122 0.878 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.224 -6.772 18.079 26.549 hybrid contribution 0.568 -0.439 -0.980 1.215 sum -17.656 -7.210 17.099 25.614 Atomic orbital electron populations 1.21702 0.94915 1.01710 1.02346 1.21522 0.97074 0.93530 1.03195 1.22569 0.93151 0.94880 0.87663 0.91763 1.22481 0.94836 0.83397 1.03812 1.48308 1.47883 1.14563 1.25093 1.21084 0.77500 0.87922 0.82879 1.90747 1.58823 1.16624 1.73810 1.21868 1.00895 0.99921 0.95274 1.21457 0.97946 0.97916 0.96720 1.21647 0.99166 0.98624 0.95315 1.19098 0.93923 0.94784 0.93929 1.21322 1.26887 0.97258 1.10322 0.92709 1.25046 0.96589 0.94939 0.98030 1.69989 1.35160 1.11510 1.36820 0.86557 0.78782 0.80364 0.82413 1.19767 1.21053 1.21044 1.21954 0.94627 0.94573 0.88235 0.90600 1.22126 1.03395 0.92139 1.01686 1.23090 0.93566 0.82981 1.02913 1.87941 1.79819 1.23830 1.37794 0.91970 0.92825 0.92551 0.90786 0.90071 0.90514 0.88309 0.89198 0.89373 0.91823 0.91790 0.93496 0.93528 0.96604 0.96601 0.93097 0.90956 0.93678 0.90330 0.87804 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.81 37.16 0.36 -0.59 16 2 C -0.12 -0.74 5.64 -26.73 -0.15 -0.89 16 3 C 0.08 0.62 2.78 -26.58 -0.07 0.55 16 4 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 5 C 0.08 0.67 5.81 -3.53 -0.02 0.65 16 6 N -0.62 -7.02 3.02 -164.75 -0.50 -7.51 16 7 C 0.52 7.29 7.60 -10.98 -0.08 7.20 16 8 O -0.52 -9.04 11.54 5.56 0.06 -8.98 16 9 C -0.14 -1.88 4.14 -27.88 -0.12 -1.99 16 10 C -0.10 -1.83 4.50 -26.73 -0.12 -1.95 16 11 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 12 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 13 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 14 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 17 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 C 0.11 1.13 3.68 -67.42 -0.25 0.88 16 22 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 23 C -0.14 -1.56 7.62 37.16 0.28 -1.28 16 24 C 0.05 0.46 6.29 37.31 0.23 0.69 16 25 O -0.38 -3.57 9.93 -35.23 -0.35 -3.92 16 26 H 0.06 0.45 7.83 -51.93 -0.41 0.05 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 0.73 6.07 -51.93 -0.32 0.41 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.02 7.46 -51.93 -0.39 0.64 16 35 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 36 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.07 0.97 6.82 -51.93 -0.35 0.62 16 43 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 1.07 6.76 -51.93 -0.35 0.72 16 45 H 0.10 0.72 8.14 -51.92 -0.42 0.29 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 360.54 15.07 5.43 5.43 Total: -1.00 -33.00 360.54 -8.79 -41.79 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -8.54 Total: -4.30 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -0.62 Total: -12.56 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.24 Total: -34.37 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.29 Total: -12.90 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.00 -8.79 -41.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593282033.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.415 kcal (2) G-P(sol) polarization free energy of solvation -33.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds