Wall clock time and date at job start Tue Mar 31 2020 06:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46963 * 2 1 4 4 H 1.09005 * 109.50914 * 305.10186 * 3 2 1 5 5 C 1.53292 * 109.51034 * 185.00333 * 3 2 1 6 6 N 1.47156 * 108.38268 * 187.77298 * 5 3 2 7 7 C 1.34774 * 120.98312 * 230.55222 * 6 5 3 8 8 O 1.21280 * 120.00385 * 175.26323 * 7 6 5 9 9 C 1.50704 * 119.99738 * 355.27136 * 7 6 5 10 10 C 1.52997 * 109.46740 * 179.97438 * 9 7 6 11 11 C 1.53007 * 109.46940 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46940 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47057 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99930 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00177 * 179.97438 * 13 12 11 16 16 N 1.31519 * 120.00022 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00180 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47093 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47092 * 120.00061 * 17 15 13 20 20 H 1.48498 * 109.47293 * 239.99964 * 17 15 13 21 21 C 1.47151 * 118.03511 * 50.53316 * 6 5 3 22 22 H 1.08999 * 109.68339 * 69.18907 * 21 6 5 23 23 C 1.53001 * 109.67960 * 189.74237 * 21 6 5 24 24 C 1.53292 * 108.38495 * 309.46554 * 21 6 5 25 25 O 1.42956 * 109.22334 * 52.30089 * 24 21 6 26 26 H 1.09000 * 109.47182 * 299.99916 * 1 2 3 27 27 H 1.09004 * 109.47084 * 59.99890 * 1 2 3 28 28 H 1.09002 * 109.47191 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47330 * 119.99394 * 2 1 3 30 30 H 1.09000 * 109.47182 * 240.00084 * 2 1 3 31 31 H 1.08997 * 109.68160 * 307.49273 * 5 3 2 32 32 H 1.08996 * 109.68400 * 68.04913 * 5 3 2 33 33 H 1.09001 * 109.47101 * 299.99079 * 9 7 6 34 34 H 1.08994 * 109.47096 * 59.99900 * 9 7 6 35 35 H 1.09001 * 109.47661 * 299.99239 * 10 9 7 36 36 H 1.09002 * 109.47442 * 60.00197 * 10 9 7 37 37 H 1.09001 * 109.47146 * 299.99504 * 11 10 9 38 38 H 1.08994 * 109.46851 * 60.00203 * 11 10 9 39 39 H 1.09008 * 109.47440 * 299.99742 * 12 11 10 40 40 H 1.09002 * 109.47442 * 60.00375 * 12 11 10 41 41 H 0.97006 * 119.99823 * 180.02562 * 16 15 13 42 42 H 1.08998 * 109.47282 * 53.27201 * 23 21 6 43 43 H 1.09004 * 109.46914 * 173.26960 * 23 21 6 44 44 H 1.09004 * 109.47157 * 293.26778 * 23 21 6 45 45 H 1.09007 * 109.51665 * 172.22775 * 24 21 6 46 46 H 1.09003 * 109.51444 * 292.32803 * 24 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6042 1.9827 -0.8406 5 6 3.5677 1.4455 -0.1260 6 7 4.0464 2.8240 0.0643 7 6 4.8911 3.3931 -0.8183 8 8 5.2069 4.5572 -0.6915 9 6 5.4431 2.5830 -1.9629 10 6 6.3683 3.4602 -2.8088 11 6 6.9293 2.6376 -3.9706 12 6 7.8539 3.5149 -4.8169 13 6 8.4070 2.7045 -5.9608 14 1 8.1273 1.6673 -6.0728 15 6 9.2700 3.2871 -6.8645 16 7 9.6111 4.5500 -6.7279 17 14 9.9561 2.2825 -8.2820 18 1 9.4223 0.8985 -8.2118 19 1 9.5530 2.9033 -9.5694 20 1 11.4380 2.2472 -8.1921 21 6 3.5752 3.5627 1.2465 22 1 4.0085 3.1285 2.1475 23 6 3.9857 5.0323 1.1331 24 6 2.0471 3.4566 1.3056 25 8 1.6673 2.0808 1.2237 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 4.0002 0.7981 0.6368 32 1 3.8551 1.0904 -1.1156 33 1 6.0045 1.7351 -1.5705 34 1 4.6217 2.2204 -2.5808 35 1 5.8067 4.3079 -3.2014 36 1 7.1898 3.8232 -2.1912 37 1 7.4911 1.7901 -3.5778 38 1 6.1081 2.2743 -4.5883 39 1 7.2918 4.3622 -5.2098 40 1 8.6753 3.8786 -4.1994 41 1 10.2180 4.9599 -7.3640 42 1 3.6436 5.4325 0.1787 43 1 3.5347 5.5993 1.9475 44 1 5.0712 5.1119 1.1924 45 1 1.6889 3.8779 2.2449 46 1 1.6114 4.0056 0.4707 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593282033.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:54 Heat of formation + Delta-G solvation = -119.040569 kcal Electronic energy + Delta-G solvation = -22798.389218 eV Core-core repulsion = 19493.674455 eV Total energy + Delta-G solvation = -3304.714764 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.73942 -39.62233 -36.80257 -35.94912 -35.37115 -34.58522 -33.00536 -31.21588 -29.18821 -27.44314 -27.30112 -24.62430 -24.46052 -22.82810 -21.99372 -21.64931 -19.98048 -18.43033 -17.97456 -17.52683 -17.36285 -17.01628 -16.49998 -16.19407 -15.85231 -15.66572 -14.98430 -14.81144 -14.54145 -14.45382 -14.23865 -13.70550 -13.67385 -13.41537 -13.28777 -13.27341 -12.87985 -12.78378 -12.70434 -12.30583 -12.23328 -12.14400 -12.10155 -12.00578 -11.84704 -11.59581 -11.39181 -11.32413 -11.16371 -11.05977 -10.56141 -10.13820 -9.51498 -8.19196 -6.31354 1.40443 1.41318 1.54830 1.58318 1.81846 2.41696 2.71111 3.13726 3.47520 3.59869 3.78305 3.97769 4.00355 4.04322 4.10012 4.12017 4.18259 4.32805 4.48534 4.52195 4.59681 4.62720 4.65177 4.67442 4.75990 4.79541 4.84729 4.86059 4.99034 5.05903 5.16209 5.17382 5.23819 5.28789 5.32786 5.36508 5.47716 5.55284 5.56839 5.77421 5.87622 6.13586 6.24871 6.31001 6.87430 7.15689 7.38474 8.93313 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.023366 B = 0.002954 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.044593 B = 9476.278936 C =10482.019276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C 0.075 3.925 4 H 0.058 0.942 5 C 0.073 3.927 6 N -0.618 5.618 7 C 0.511 3.489 8 O -0.567 6.567 9 C -0.129 4.129 10 C -0.093 4.093 11 C -0.095 4.095 12 C 0.019 3.981 13 C -0.540 4.540 14 H 0.067 0.933 15 C -0.007 4.007 16 N -0.939 5.939 17 Si 0.970 3.030 18 H -0.256 1.256 19 H -0.279 1.279 20 H -0.279 1.279 21 C 0.106 3.894 22 H 0.086 0.914 23 C -0.127 4.127 24 C 0.058 3.942 25 O -0.383 6.383 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.043 0.957 36 H 0.042 0.958 37 H 0.060 0.940 38 H 0.061 0.939 39 H -0.016 1.016 40 H -0.016 1.016 41 H 0.263 0.737 42 H 0.047 0.953 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.125 0.875 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.531 -10.360 18.117 28.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C 0.016 3.984 4 H 0.076 0.924 5 C -0.049 4.049 6 N -0.353 5.353 7 C 0.302 3.698 8 O -0.447 6.447 9 C -0.169 4.169 10 C -0.131 4.131 11 C -0.132 4.132 12 C -0.018 4.018 13 C -0.578 4.578 14 H 0.085 0.915 15 C -0.204 4.204 16 N -0.579 5.579 17 Si 0.794 3.206 18 H -0.180 1.180 19 H -0.205 1.205 20 H -0.205 1.205 21 C 0.003 3.997 22 H 0.104 0.896 23 C -0.185 4.185 24 C -0.020 4.020 25 O -0.302 6.302 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.117 0.883 31 H 0.108 0.892 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.003 0.997 40 H 0.002 0.998 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.143 0.857 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -19.368 -9.719 18.266 28.341 hybrid contribution 0.891 0.507 -0.985 1.422 sum -18.477 -9.212 17.280 26.923 Atomic orbital electron populations 1.21694 0.95092 1.02185 1.01674 1.21546 0.96866 0.92322 1.04206 1.22677 0.92851 0.95830 0.87026 0.92394 1.22750 0.95077 0.81799 1.05272 1.48351 1.46725 1.15682 1.24503 1.21182 0.77811 0.87442 0.83410 1.90754 1.60555 1.18405 1.74946 1.21739 1.00977 0.99308 0.94858 1.21231 0.97968 0.97782 0.96163 1.21441 0.98441 0.97951 0.95403 1.19055 0.93790 0.94801 0.94177 1.21788 1.27102 0.97969 1.10971 0.91525 1.26099 0.96930 0.96120 1.01295 1.70144 1.35961 1.13611 1.38203 0.85332 0.77943 0.79155 0.78203 1.17993 1.20489 1.20504 1.22067 0.95869 0.93601 0.88129 0.89636 1.21942 1.01661 0.93584 1.01270 1.23084 0.92117 0.82964 1.03820 1.87945 1.79861 1.23945 1.38465 0.93149 0.93003 0.91519 0.90454 0.88338 0.89182 0.86694 0.86697 0.86696 0.93849 0.93887 0.92099 0.92048 0.99735 0.99775 0.92862 0.93396 0.91222 0.93015 0.85676 0.93291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.81 71.98 0.71 -0.89 16 2 C -0.11 -1.11 5.64 30.60 0.17 -0.94 16 3 C 0.07 1.04 2.78 30.69 0.09 1.12 16 4 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 5 C 0.07 1.03 5.81 86.35 0.50 1.54 16 6 N -0.62 -13.00 3.02 -793.54 -2.40 -15.40 16 7 C 0.51 14.15 7.60 87.66 0.67 14.82 16 8 O -0.57 -20.31 11.54 -3.03 -0.03 -20.35 16 9 C -0.13 -3.24 4.14 29.85 0.12 -3.12 16 10 C -0.09 -3.37 4.50 30.60 0.14 -3.23 16 11 C -0.09 -3.86 5.15 30.60 0.16 -3.70 16 12 C 0.02 1.04 4.97 29.85 0.15 1.19 16 13 C -0.54 -31.33 9.11 25.60 0.23 -31.10 16 14 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 15 C -0.01 -0.44 5.46 84.65 0.46 0.03 16 16 N -0.94 -59.22 13.29 21.45 0.28 -58.94 16 17 Si 0.97 44.77 29.54 68.60 2.03 46.79 16 18 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 C 0.11 2.07 3.68 44.97 0.17 2.23 16 22 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 23 C -0.13 -2.95 7.62 71.98 0.55 -2.40 16 24 C 0.06 0.92 6.29 72.08 0.45 1.37 16 25 O -0.38 -6.47 9.93 -148.98 -1.48 -7.95 16 26 H 0.05 0.66 7.83 -2.39 -0.02 0.64 16 27 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.56 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.11 1.26 6.07 -2.39 -0.01 1.24 16 33 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.11 2.29 7.46 -2.39 -0.02 2.27 16 35 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 36 H 0.04 1.70 8.10 -2.39 -0.02 1.69 16 37 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 39 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 40 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 41 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 42 H 0.05 1.34 6.82 -2.39 -0.02 1.32 16 43 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 44 H 0.05 1.47 6.76 -2.38 -0.02 1.46 16 45 H 0.13 1.44 8.14 -2.38 -0.02 1.42 16 46 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -73.97 360.54 3.88 -70.09 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 0.91 Total: 8.83 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: 4.56 Total: -23.08 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: -2.11 Total: -74.33 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -1.51 Total: -28.30 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -73.97 3.88 -70.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593282033.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.950 kcal (2) G-P(sol) polarization free energy of solvation -73.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds