Wall clock time and date at job start Tue Mar 31 2020 06:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47219 * 2 1 4 4 C 1.53000 * 109.46834 * 240.00073 * 2 1 3 5 5 O 1.45197 * 109.47532 * 120.00324 * 2 1 3 6 6 C 1.34232 * 116.99772 * 59.99521 * 5 2 1 7 7 O 1.20823 * 120.00542 * 0.02562 * 6 5 2 8 8 C 1.50703 * 119.99867 * 179.97438 * 6 5 2 9 9 N 1.46898 * 109.47190 * 185.52496 * 8 6 5 10 10 C 1.46897 * 110.99613 * 75.80189 * 9 8 6 11 11 C 1.53006 * 109.47239 * 189.99632 * 10 9 8 12 12 C 1.50701 * 109.47317 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99575 * 0.02562 * 12 11 10 14 14 C 1.37871 * 119.99888 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00045 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00013 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47126 * 89.99790 * 16 14 12 18 18 H 1.48495 * 109.47048 * 209.99863 * 16 14 12 19 19 H 1.48497 * 109.46646 * 329.99857 * 16 14 12 20 20 C 1.46904 * 111.00106 * 199.75700 * 9 8 6 21 21 C 1.53774 * 113.61380 * 147.61666 * 20 9 8 22 22 C 1.53954 * 87.02034 * 220.04626 * 21 20 9 23 23 C 1.53781 * 113.61353 * 50.00737 * 20 9 8 24 24 H 1.09008 * 109.46787 * 299.99891 * 1 2 3 25 25 H 1.08998 * 109.47115 * 59.99525 * 1 2 3 26 26 H 1.08997 * 109.47255 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46979 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46966 * 300.00091 * 3 2 1 29 29 H 1.08996 * 109.46965 * 60.00738 * 3 2 1 30 30 H 1.08997 * 109.47174 * 300.00019 * 4 2 1 31 31 H 1.09008 * 109.47076 * 60.00388 * 4 2 1 32 32 H 1.08999 * 109.47427 * 179.97438 * 4 2 1 33 33 H 1.08991 * 109.47625 * 305.53089 * 8 6 5 34 34 H 1.09008 * 109.46723 * 65.53020 * 8 6 5 35 35 H 1.08993 * 109.47472 * 309.99927 * 10 9 8 36 36 H 1.09009 * 109.47073 * 70.00361 * 10 9 8 37 37 H 1.08993 * 109.47130 * 300.00505 * 11 10 9 38 38 H 1.09005 * 109.46651 * 59.99908 * 11 10 9 39 39 H 0.97004 * 119.99589 * 180.02562 * 15 14 12 40 40 H 1.09004 * 112.84788 * 278.80862 * 20 9 8 41 41 H 1.09003 * 113.61942 * 334.56589 * 21 20 9 42 42 H 1.09004 * 113.61680 * 105.46769 * 21 20 9 43 43 H 1.09003 * 113.53798 * 270.81281 * 22 21 20 44 44 H 1.08997 * 113.66944 * 139.93055 * 22 21 20 45 45 H 1.09002 * 113.61337 * 254.53037 * 23 20 9 46 46 H 1.08999 * 113.61473 * 25.35036 * 23 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6534 -1.9685 1.3377 7 8 0.9566 -2.5028 0.5078 8 6 2.1184 -2.7439 2.5434 9 7 1.7050 -4.1474 2.4123 10 6 2.5560 -4.8590 1.4493 11 6 1.9510 -6.2324 1.1515 12 6 2.8236 -6.9622 0.1631 13 1 3.7203 -6.4934 -0.2145 14 6 2.4773 -8.2282 -0.2590 15 7 1.3850 -8.7987 0.2006 16 14 3.5594 -9.1331 -1.4836 17 1 4.5796 -9.9258 -0.7515 18 1 2.7222 -10.0429 -2.3061 19 1 4.2365 -8.1499 -2.3667 20 6 1.7093 -4.8216 3.7174 21 6 0.6318 -5.9105 3.8518 22 6 0.4162 -5.4067 5.2905 23 6 0.9562 -4.0483 4.8127 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6766 -1.7489 -1.2493 31 1 1.6766 -0.2073 -2.1393 32 1 3.1299 -0.7209 -1.2496 33 1 3.2047 -2.6901 2.6132 34 1 1.6749 -2.3170 3.4431 35 1 2.6208 -4.2827 0.5264 36 1 3.5537 -4.9850 1.8698 37 1 1.8862 -6.8087 2.0744 38 1 0.9532 -6.1064 0.7310 39 1 1.1416 -9.6896 -0.0962 40 1 2.7032 -5.1511 4.0203 41 1 -0.2291 -5.7556 3.2013 42 1 1.0271 -6.9249 3.7980 43 1 1.0561 -5.8973 6.0240 44 1 -0.6308 -5.3787 5.5920 45 1 1.6130 -3.5615 5.5337 46 1 0.1852 -3.3822 4.4254 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594052894.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:51 Heat of formation + Delta-G solvation = -68.009340 kcal Electronic energy + Delta-G solvation = -23671.978795 eV Core-core repulsion = 20369.476911 eV Total energy + Delta-G solvation = -3302.501883 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.61977 -39.02185 -36.81358 -34.84999 -33.98534 -32.89167 -30.08128 -27.46739 -27.37618 -27.20240 -25.30043 -24.69607 -23.14290 -21.58667 -20.08685 -19.33942 -18.92672 -17.01636 -16.44654 -16.18674 -16.01767 -15.44064 -15.04261 -14.46534 -14.40460 -14.26705 -13.64746 -13.57504 -13.11693 -12.76316 -12.54121 -12.36489 -12.12119 -12.04977 -11.90549 -11.86802 -11.75676 -11.42167 -11.24781 -11.20195 -11.10549 -10.94081 -10.52486 -10.46792 -10.34236 -10.25440 -9.93283 -9.66156 -9.53589 -9.31739 -8.96859 -8.25241 -7.80068 -5.92800 -3.94063 2.58727 2.76325 3.35343 3.41633 3.45252 4.37235 4.56660 4.69819 4.72854 4.86054 4.87740 4.92793 4.98015 5.23053 5.31461 5.39668 5.40261 5.43711 5.49262 5.49761 5.63228 5.69044 5.80718 5.84093 5.85086 5.91613 5.93347 6.09924 6.17989 6.27180 6.29455 6.36345 6.40797 6.56433 6.68476 6.72933 6.83985 7.07138 7.44886 7.57232 7.82532 8.01518 8.17405 8.23124 8.51593 9.12940 9.68498 11.18482 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.012684 B = 0.005259 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.978187 B = 5323.411993 C = 7061.733288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.118 3.882 3 C -0.139 4.139 4 C -0.184 4.184 5 O -0.362 6.362 6 C 0.457 3.543 7 O -0.469 6.469 8 C 0.060 3.940 9 N -0.513 5.513 10 C 0.064 3.936 11 C 0.030 3.970 12 C -0.519 4.519 13 H 0.051 0.949 14 C 0.059 3.941 15 N -0.892 5.892 16 Si 0.889 3.111 17 H -0.282 1.282 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.064 3.936 21 C -0.113 4.113 22 C -0.145 4.145 23 C -0.140 4.140 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.061 0.939 36 H 0.018 0.982 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.259 0.741 40 H 0.066 0.934 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.060 0.940 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.144 17.698 6.404 18.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.082 3.918 3 C -0.196 4.196 4 C -0.241 4.241 5 O -0.280 6.280 6 C 0.298 3.702 7 O -0.353 6.353 8 C -0.069 4.069 9 N -0.238 5.238 10 C -0.063 4.063 11 C -0.007 4.007 12 C -0.558 4.558 13 H 0.069 0.931 14 C -0.142 4.142 15 N -0.531 5.531 16 Si 0.717 3.283 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.044 4.044 21 C -0.151 4.151 22 C -0.183 4.183 23 C -0.177 4.177 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.126 0.874 35 H 0.080 0.920 36 H 0.037 0.963 37 H 0.043 0.957 38 H 0.044 0.956 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.951 17.395 5.906 18.395 hybrid contribution 1.410 -0.504 -0.626 1.623 sum 0.459 16.891 5.280 17.703 Atomic orbital electron populations 1.22482 0.94199 1.05034 1.02226 1.22085 0.94296 0.91987 0.83446 1.21833 1.02077 0.92974 1.02705 1.22497 1.01585 1.03647 0.96409 1.86515 1.70470 1.26049 1.44986 1.23657 0.78365 0.80147 0.88055 1.90621 1.33488 1.69170 1.42050 1.21539 0.99944 0.91160 0.94296 1.62017 1.54387 0.98510 1.08910 1.22440 0.92477 0.98199 0.93152 1.19114 0.96601 0.88225 0.96791 1.21200 1.08704 1.00451 1.25493 0.93106 1.24948 0.95167 0.97528 0.96510 1.69974 1.23951 1.15028 1.44192 0.86648 0.80461 0.79726 0.81471 1.20779 1.21233 1.20000 1.23133 0.97747 0.96164 0.87335 1.22999 0.99115 0.98389 0.94616 1.22795 1.00837 0.96793 0.97866 1.23101 1.00068 0.97070 0.97490 0.92277 0.91389 0.89441 0.91639 0.90624 0.91696 0.89314 0.91368 0.92158 0.91501 0.87402 0.92048 0.96332 0.95706 0.95629 0.93127 0.91631 0.89094 0.90758 0.90643 0.91573 0.92096 0.89642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 8.37 37.16 0.31 -1.88 16 2 C 0.12 1.45 1.13 -90.62 -0.10 1.35 16 3 C -0.14 -1.26 8.85 37.16 0.33 -0.93 16 4 C -0.18 -2.39 8.37 37.16 0.31 -2.08 16 5 O -0.36 -5.14 9.89 -39.26 -0.39 -5.53 16 6 C 0.46 7.43 6.82 36.01 0.25 7.68 16 7 O -0.47 -9.09 11.01 -18.75 -0.21 -9.30 16 8 C 0.06 0.89 5.47 -4.98 -0.03 0.87 16 9 N -0.51 -9.39 4.04 -227.11 -0.92 -10.31 16 10 C 0.06 1.40 4.53 -3.82 -0.02 1.38 16 11 C 0.03 0.80 4.50 -27.88 -0.13 0.67 16 12 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 13 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 16 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.06 1.04 2.97 -66.90 -0.20 0.85 16 21 C -0.11 -1.94 6.13 -25.83 -0.16 -2.10 16 22 C -0.14 -1.90 8.09 -25.83 -0.21 -2.11 16 23 C -0.14 -1.78 6.20 -25.92 -0.16 -1.94 16 24 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.09 1.31 5.89 -51.93 -0.31 1.00 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.09 1.44 5.89 -51.93 -0.31 1.14 16 31 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.92 8.00 -51.93 -0.42 0.51 16 34 H 0.11 1.34 6.13 -51.92 -0.32 1.02 16 35 H 0.06 1.42 6.89 -51.93 -0.36 1.06 16 36 H 0.02 0.40 8.04 -51.92 -0.42 -0.02 16 37 H 0.02 0.67 5.45 -51.93 -0.28 0.39 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.07 1.08 8.01 -51.93 -0.42 0.66 16 41 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 42 H 0.07 1.41 7.18 -51.93 -0.37 1.04 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.09 1.10 7.71 -51.93 -0.40 0.70 16 LS Contribution 358.03 15.07 5.40 5.40 Total: -1.00 -31.77 358.03 -8.82 -40.60 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -8.21 Total: 0.45 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -0.21 Total: -11.99 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: -0.18 Total: -36.69 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.59 Total: -14.83 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.77 -8.82 -40.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594052894.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.412 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds