Wall clock time and date at job start Tue Mar 31 2020 06:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47431 * 2 1 4 4 C 1.53002 * 109.46829 * 240.00164 * 2 1 3 5 5 O 1.45196 * 109.47412 * 120.00677 * 2 1 3 6 6 C 1.34231 * 117.00254 * 59.99150 * 5 2 1 7 7 O 1.20828 * 119.99850 * 0.02562 * 6 5 2 8 8 C 1.50699 * 120.00150 * 180.02562 * 6 5 2 9 9 C 1.53006 * 109.46866 * 180.02562 * 8 6 5 10 10 N 1.46902 * 109.46626 * 180.02562 * 9 8 6 11 11 C 1.46843 * 111.00376 * 45.79131 * 10 9 8 12 12 C 1.53035 * 109.52382 * 185.84140 * 11 10 9 13 13 C 1.53122 * 109.27584 * 300.81753 * 12 11 10 14 14 C 1.53120 * 109.16068 * 57.65636 * 13 12 11 15 15 H 1.08999 * 109.53877 * 62.30858 * 14 13 12 16 16 C 1.50705 * 109.50311 * 182.40795 * 14 13 12 17 17 H 1.07994 * 120.00172 * 119.80025 * 16 14 13 18 18 C 1.37879 * 119.99478 * 299.80223 * 16 14 13 19 19 N 1.31509 * 120.00400 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99715 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47118 * 60.00001 * 20 18 16 22 22 H 1.48502 * 109.47276 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47116 * 299.99731 * 20 18 16 24 24 C 1.46845 * 110.99560 * 170.00278 * 10 9 8 25 25 H 1.09001 * 109.46747 * 300.00011 * 1 2 3 26 26 H 1.08998 * 109.47013 * 59.99227 * 1 2 3 27 27 H 1.08994 * 109.47539 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47303 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47654 * 300.00380 * 3 2 1 30 30 H 1.09002 * 109.46566 * 60.00707 * 3 2 1 31 31 H 1.08993 * 109.47676 * 300.00426 * 4 2 1 32 32 H 1.09008 * 109.46908 * 60.00354 * 4 2 1 33 33 H 1.09003 * 109.47318 * 179.97438 * 4 2 1 34 34 H 1.08993 * 109.47512 * 60.00512 * 8 6 5 35 35 H 1.09000 * 109.47247 * 300.00221 * 8 6 5 36 36 H 1.09000 * 109.47050 * 299.99952 * 9 8 6 37 37 H 1.09001 * 109.46801 * 60.00064 * 9 8 6 38 38 H 1.09004 * 109.45992 * 305.85350 * 11 10 9 39 39 H 1.08992 * 109.46423 * 65.81838 * 11 10 9 40 40 H 1.08996 * 109.50302 * 180.87813 * 12 11 10 41 41 H 1.09000 * 109.54132 * 60.77326 * 12 11 10 42 42 H 1.09002 * 109.52504 * 297.75170 * 13 12 11 43 43 H 1.09003 * 109.57502 * 177.59476 * 13 12 11 44 44 H 0.97004 * 120.00269 * 180.02562 * 19 18 16 45 45 H 1.09002 * 109.46039 * 294.17038 * 24 10 9 46 46 H 1.08996 * 109.46642 * 54.15319 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0141 -0.6846 1.1854 6 6 1.6533 -1.9685 1.3377 7 8 0.9565 -2.5028 0.5077 8 6 2.1174 -2.7436 2.5439 9 6 1.5708 -4.1710 2.4741 10 7 2.0227 -4.9263 3.6503 11 6 1.8478 -4.1414 4.8789 12 6 2.4602 -4.8973 6.0602 13 6 1.7734 -6.2587 6.2000 14 6 1.9287 -7.0367 4.8904 15 1 2.9860 -7.2174 4.6968 16 6 1.2047 -8.3541 4.9989 17 1 0.3992 -8.5853 4.3177 18 6 1.5709 -9.2640 5.9679 19 7 2.5515 -8.9822 6.7977 20 14 0.6741 -10.8972 6.1020 21 1 0.8217 -11.6489 4.8298 22 1 1.2542 -11.6905 7.2153 23 1 -0.7661 -10.6508 6.3672 24 6 1.3317 -6.2187 3.7429 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9564 -0.8899 30 1 1.6768 1.9562 0.8901 31 1 1.6766 -1.7488 -1.2494 32 1 1.6766 -0.2073 -2.1393 33 1 3.1300 -0.7209 -1.2496 34 1 1.7533 -2.2587 3.4496 35 1 3.2069 -2.7725 2.5602 36 1 0.4813 -4.1424 2.4577 37 1 1.9353 -4.6557 1.5684 38 1 2.3444 -3.1775 4.7678 39 1 0.7848 -3.9833 5.0607 40 1 2.3165 -4.3217 6.9745 41 1 3.5262 -5.0438 5.8862 42 1 0.7146 -6.1124 6.4134 43 1 2.2349 -6.8188 7.0133 44 1 2.8093 -9.6226 7.4792 45 1 0.2710 -6.0509 3.9300 46 1 1.4535 -6.7637 2.8069 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595613631.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:35 Heat of formation + Delta-G solvation = -100.184660 kcal Electronic energy + Delta-G solvation = -23028.597731 eV Core-core repulsion = 19724.700621 eV Total energy + Delta-G solvation = -3303.897110 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.96029 -38.45646 -37.13733 -34.41065 -34.10206 -32.14362 -30.39997 -29.40485 -27.68034 -27.64870 -25.05900 -24.76540 -22.37849 -21.75453 -20.40617 -19.57812 -18.62315 -17.38779 -16.61215 -16.40654 -16.26428 -15.05116 -14.86499 -14.66643 -14.27700 -14.06047 -13.82662 -13.56580 -13.22746 -12.76425 -12.73358 -12.56195 -12.35348 -12.25926 -12.16538 -12.16086 -11.68648 -11.58207 -11.45386 -11.35652 -11.08066 -10.91020 -10.68512 -10.58396 -10.54989 -10.15632 -9.97225 -9.79383 -9.44425 -9.02590 -8.69099 -8.28015 -7.68244 -5.95399 -4.01424 2.17775 2.53419 3.34109 3.38590 3.41336 4.34305 4.43818 4.48747 4.49660 4.64036 4.75316 4.94607 5.08576 5.19426 5.25842 5.34655 5.41135 5.44917 5.51181 5.57146 5.61549 5.66422 5.71735 5.77266 5.98784 6.01407 6.03966 6.05847 6.13130 6.26514 6.42299 6.44340 6.52952 6.71302 6.76468 6.98316 7.22733 7.39966 7.63571 7.73524 7.78068 7.82601 8.10481 8.19197 8.50174 9.02399 9.62718 11.10632 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.039078 B = 0.002973 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.349113 B = 9415.202298 C = 9830.360053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.115 3.885 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.353 6.353 6 C 0.467 3.533 7 O -0.503 6.503 8 C -0.119 4.119 9 C 0.068 3.932 10 N -0.538 5.538 11 C 0.052 3.948 12 C -0.117 4.117 13 C -0.112 4.112 14 C 0.055 3.945 15 H 0.035 0.965 16 C -0.515 4.515 17 H 0.053 0.947 18 C 0.063 3.937 19 N -0.889 5.889 20 Si 0.890 3.110 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 C 0.069 3.931 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.036 0.964 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.024 0.976 40 H 0.046 0.954 41 H 0.061 0.939 42 H 0.029 0.971 43 H 0.091 0.909 44 H 0.260 0.740 45 H 0.020 0.980 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.528 19.616 -10.611 22.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.079 3.921 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.271 6.271 6 C 0.310 3.690 7 O -0.391 6.391 8 C -0.157 4.157 9 C -0.060 4.060 10 N -0.263 5.263 11 C -0.075 4.075 12 C -0.155 4.155 13 C -0.150 4.150 14 C 0.037 3.963 15 H 0.053 0.947 16 C -0.554 4.554 17 H 0.071 0.929 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.204 1.204 24 C -0.058 4.058 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.055 0.945 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.042 0.958 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.048 0.952 43 H 0.109 0.891 44 H 0.070 0.930 45 H 0.039 0.961 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.148 19.308 -10.791 22.119 hybrid contribution -1.452 -0.666 0.085 1.600 sum -1.600 18.642 -10.706 21.557 Atomic orbital electron populations 1.22489 0.94100 1.04842 1.02599 1.22160 0.94372 0.92275 0.83272 1.21846 1.02239 0.92703 1.02949 1.22491 1.01709 1.03282 0.96541 1.86562 1.69915 1.25677 1.44960 1.23767 0.77220 0.80373 0.87650 1.90577 1.35290 1.69854 1.43410 1.21638 1.04427 0.95459 0.94166 1.21862 0.97855 0.90627 0.95664 1.62128 1.58234 1.04546 1.01347 1.22201 0.98110 0.96222 0.90998 1.21673 1.00751 0.98199 0.94880 1.21663 0.97716 0.92744 1.02840 1.18663 0.96982 0.91825 0.88878 0.94691 1.21118 1.17835 1.00732 1.15725 0.92888 1.24926 0.95038 0.98145 0.95699 1.69877 1.28318 1.35531 1.19037 0.86690 0.79938 0.83947 0.77584 1.20298 1.21327 1.20398 1.22323 0.94667 0.87634 1.01183 0.92047 0.91168 0.89705 0.91453 0.90469 0.91505 0.89664 0.91195 0.91972 0.87534 0.86878 0.94533 0.90169 0.91866 0.95816 0.93513 0.92008 0.95179 0.89088 0.93010 0.96137 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 8.37 37.16 0.31 -1.43 16 2 C 0.12 1.12 1.13 -90.62 -0.10 1.02 16 3 C -0.14 -1.00 8.85 37.16 0.33 -0.67 16 4 C -0.18 -1.74 8.37 37.16 0.31 -1.43 16 5 O -0.35 -4.14 9.89 -39.26 -0.39 -4.53 16 6 C 0.47 6.00 7.27 36.01 0.26 6.26 16 7 O -0.50 -7.44 11.48 -18.75 -0.22 -7.65 16 8 C -0.12 -1.47 5.06 -27.88 -0.14 -1.61 16 9 C 0.07 1.05 4.56 -3.82 -0.02 1.03 16 10 N -0.54 -9.80 4.81 -234.67 -1.13 -10.93 16 11 C 0.05 0.89 4.85 -3.84 -0.02 0.87 16 12 C -0.12 -2.24 6.09 -26.65 -0.16 -2.40 16 13 C -0.11 -2.63 5.03 -26.61 -0.13 -2.76 16 14 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16 15 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 16 C -0.52 -14.20 8.56 -34.44 -0.29 -14.49 16 17 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 19 N -0.89 -25.38 11.36 55.43 0.63 -24.75 16 20 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.07 1.47 4.65 -3.83 -0.02 1.46 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 1.00 5.89 -51.93 -0.31 0.70 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 1.00 5.89 -51.93 -0.31 0.70 16 32 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.11 1.20 6.21 -51.93 -0.32 0.88 16 35 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.04 0.59 8.03 -51.93 -0.42 0.18 16 37 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 38 H 0.06 0.88 5.81 -51.93 -0.30 0.58 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 2.40 6.16 -51.93 -0.32 2.08 16 44 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.06 1.30 8.12 -51.93 -0.42 0.88 16 LS Contribution 353.01 15.07 5.32 5.32 Total: -1.00 -29.27 353.01 -9.06 -38.32 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -8.28 Total: -0.81 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 0.02 Total: -11.32 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: -0.50 Total: -35.68 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -0.60 Total: -12.18 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.27 -9.06 -38.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595613631.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.863 kcal (2) G-P(sol) polarization free energy of solvation -29.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds