Wall clock time and date at job start Tue Mar 31 2020 05:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47069 * 2 1 4 4 C 1.52997 * 109.47317 * 305.00469 * 3 2 1 5 5 C 1.52997 * 109.47269 * 185.00124 * 3 2 1 6 6 O 1.42905 * 109.46728 * 65.00521 * 3 2 1 7 7 C 1.42899 * 113.99778 * 179.97438 * 6 3 2 8 8 C 1.50699 * 109.46785 * 179.97438 * 7 6 3 9 9 O 1.21276 * 120.00221 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99728 * 179.97438 * 8 7 6 11 11 C 1.46919 * 120.63158 * 359.72283 * 10 8 7 12 12 C 1.53625 * 108.54818 * 126.36655 * 11 10 8 13 13 C 1.53040 * 109.23668 * 54.85336 * 12 11 10 14 14 C 1.53034 * 109.54031 * 298.51340 * 13 12 11 15 15 H 1.09003 * 109.49668 * 301.41180 * 14 13 12 16 16 C 1.50706 * 109.49762 * 181.32053 * 14 13 12 17 17 H 1.07997 * 119.99687 * 0.16346 * 16 14 13 18 18 C 1.37879 * 119.99922 * 180.16019 * 16 14 13 19 19 N 1.31515 * 120.00018 * 0.02562 * 18 16 14 20 20 Si 1.86796 * 119.99812 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47313 * 90.00243 * 20 18 16 22 22 H 1.48503 * 109.47282 * 210.00164 * 20 18 16 23 23 H 1.48499 * 109.47267 * 330.00179 * 20 18 16 24 24 C 1.46922 * 120.62780 * 179.97438 * 10 8 7 25 25 H 1.08994 * 109.47199 * 59.99565 * 1 2 3 26 26 H 1.09001 * 109.46743 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47048 * 299.99452 * 1 2 3 28 28 H 1.09000 * 109.47048 * 240.00548 * 2 1 3 29 29 H 1.08994 * 109.47199 * 120.00435 * 2 1 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 4 3 2 31 31 H 1.09002 * 109.47153 * 299.99641 * 4 3 2 32 32 H 1.08996 * 109.46952 * 59.99813 * 4 3 2 33 33 H 1.09000 * 109.47140 * 300.00547 * 5 3 2 34 34 H 1.09001 * 109.47230 * 59.99691 * 5 3 2 35 35 H 1.09001 * 109.47375 * 180.02562 * 5 3 2 36 36 H 1.08997 * 109.47171 * 299.99768 * 7 6 3 37 37 H 1.08997 * 109.47442 * 59.99964 * 7 6 3 38 38 H 1.09006 * 109.58321 * 246.20187 * 11 10 8 39 39 H 1.09004 * 109.58929 * 6.62114 * 11 10 8 40 40 H 1.09001 * 109.63127 * 294.86881 * 12 11 10 41 41 H 1.08997 * 109.46225 * 174.74112 * 12 11 10 42 42 H 1.09007 * 109.45898 * 178.49354 * 13 12 11 43 43 H 1.08998 * 109.44938 * 58.53371 * 13 12 11 44 44 H 0.97001 * 120.00027 * 179.97438 * 19 18 16 45 45 H 1.08998 * 109.59320 * 353.37412 * 24 10 8 46 46 H 1.09001 * 109.58915 * 113.80228 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4299 2.1992 -1.1815 5 6 3.5648 1.4444 -0.1257 6 8 1.6620 2.0813 1.2212 7 6 2.0924 3.4401 1.3237 8 6 1.6412 4.0116 2.6431 9 8 1.0126 3.3233 3.4190 10 7 1.9363 5.2877 2.9609 11 6 2.7022 6.1320 2.0341 12 6 1.9113 7.4251 1.7838 13 6 1.5957 8.0908 3.1252 14 6 0.7306 7.1534 3.9708 15 1 -0.1885 6.9220 3.4324 16 6 0.3934 7.8228 5.2782 17 1 0.7572 8.8186 5.4846 18 6 -0.3795 7.1641 6.2108 19 7 -0.8220 5.9514 5.9596 20 14 -0.7969 7.9936 7.8316 21 1 -2.0633 8.7554 7.6862 22 1 -0.9580 6.9626 8.8883 23 1 0.2988 8.9221 8.2090 24 6 1.5029 5.8592 4.2432 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.7929 3.2270 -1.1812 31 1 1.7182 1.7119 -2.1130 32 1 0.3436 2.1978 -1.0919 33 1 3.9994 0.9053 0.7160 34 1 3.8532 0.9570 -1.0571 35 1 3.9282 2.4720 -0.1253 36 1 3.1797 3.4824 1.2618 37 1 1.6592 4.0209 0.5095 38 1 3.6705 6.3719 2.4736 39 1 2.8472 5.6026 1.0923 40 1 0.9811 7.1910 1.2660 41 1 2.5073 8.1028 1.1726 42 1 1.0577 9.0225 2.9505 43 1 2.5255 8.3020 3.6532 44 1 -1.3655 5.4878 6.6158 45 1 0.8562 5.1498 4.7596 46 1 2.3750 6.0773 4.8595 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597902074.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:51 Heat of formation + Delta-G solvation = -98.124850 kcal Electronic energy + Delta-G solvation = -23730.507617 eV Core-core repulsion = 20426.699827 eV Total energy + Delta-G solvation = -3303.807790 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.77316 -38.69342 -36.56724 -34.15493 -33.36565 -31.75465 -30.34151 -29.92227 -27.98121 -27.53033 -25.02210 -24.26911 -23.29333 -21.81773 -20.03648 -19.60791 -18.25367 -17.01648 -16.38796 -15.90382 -15.70414 -15.36329 -14.65895 -14.51743 -14.21921 -13.91215 -13.68453 -13.43532 -13.40879 -13.01237 -12.63234 -12.47304 -12.26982 -12.22584 -11.99917 -11.89576 -11.79260 -11.59195 -11.22854 -10.98502 -10.92587 -10.81183 -10.49277 -10.44918 -10.37789 -10.21924 -9.88334 -9.50777 -9.19273 -9.09930 -8.79010 -8.40731 -7.71539 -5.97280 -4.06673 3.23036 3.29808 3.33491 3.39954 3.42017 4.15396 4.44899 4.61033 4.70219 4.85019 5.07876 5.13725 5.22623 5.29889 5.32671 5.34037 5.36267 5.47459 5.48084 5.52517 5.53258 5.62839 5.64772 5.83780 5.88972 5.96231 6.00453 6.05649 6.15301 6.21649 6.30331 6.39940 6.59426 6.67705 6.84845 6.98169 7.11858 7.25942 7.36588 7.66641 7.89339 8.02040 8.28046 8.40861 8.92771 8.99043 9.59087 11.07905 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.023604 B = 0.004152 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.967048 B = 6742.580029 C = 7506.449244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.105 4.105 3 C 0.106 3.894 4 C -0.182 4.182 5 C -0.180 4.180 6 O -0.346 6.346 7 C 0.041 3.959 8 C 0.505 3.495 9 O -0.517 6.517 10 N -0.607 5.607 11 C 0.108 3.892 12 C -0.134 4.134 13 C -0.110 4.110 14 C 0.040 3.960 15 H 0.029 0.971 16 C -0.522 4.522 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.879 5.879 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.114 3.886 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.264 0.736 45 H 0.123 0.877 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.554 -6.582 -15.555 18.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.143 4.143 3 C 0.067 3.933 4 C -0.239 4.239 5 C -0.237 4.237 6 O -0.264 6.264 7 C -0.039 4.039 8 C 0.291 3.709 9 O -0.392 6.392 10 N -0.343 5.343 11 C -0.016 4.016 12 C -0.172 4.172 13 C -0.148 4.148 14 C 0.020 3.980 15 H 0.047 0.953 16 C -0.561 4.561 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.517 5.517 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.006 4.006 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.141 0.859 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.992 -7.220 -14.892 18.378 hybrid contribution 0.028 0.715 0.558 0.907 sum 8.020 -6.505 -14.334 17.666 Atomic orbital electron populations 1.21815 0.95148 1.01354 1.02867 1.21465 0.96999 0.93460 1.02340 1.21576 0.93317 0.93602 0.84826 1.22510 1.02584 1.00624 0.98213 1.22445 0.96056 1.02520 1.02672 1.88129 1.77848 1.23215 1.37226 1.22330 0.99350 0.85014 0.97180 1.20070 0.80872 0.82277 0.87683 1.90729 1.38791 1.58579 1.51066 1.48464 1.54582 1.10361 1.20850 1.21734 0.94870 0.92335 0.92630 1.22025 0.99825 0.96029 0.99329 1.21621 1.00151 0.99024 0.94002 1.18968 0.93521 0.90570 0.94897 0.95333 1.21071 1.32453 1.01560 1.01009 0.92367 1.25060 0.95547 0.94897 0.98519 1.69890 1.34812 1.11644 1.35326 0.86595 0.78734 0.79151 0.83527 1.20690 1.21171 1.19916 1.22279 0.98188 0.99046 0.81067 0.92681 0.93051 0.91294 0.90966 0.91065 0.92305 0.91621 0.91048 0.91584 0.91577 0.92185 0.90994 0.90816 0.91867 0.91538 0.92113 0.92235 0.93003 0.93162 0.92604 0.85905 0.93992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.32 37.16 0.35 -1.38 16 2 C -0.11 -1.11 5.23 -26.73 -0.14 -1.25 16 3 C 0.11 1.23 0.82 -90.62 -0.07 1.15 16 4 C -0.18 -1.80 7.76 37.16 0.29 -1.51 16 5 C -0.18 -1.71 8.25 37.16 0.31 -1.40 16 6 O -0.35 -5.60 9.05 -55.14 -0.50 -6.10 16 7 C 0.04 0.63 3.96 36.01 0.14 0.77 16 8 C 0.51 10.57 7.78 -10.98 -0.09 10.48 16 9 O -0.52 -13.47 15.91 -14.35 -0.23 -13.70 16 10 N -0.61 -12.31 2.97 -172.53 -0.51 -12.83 16 11 C 0.11 1.64 6.37 -3.49 -0.02 1.62 16 12 C -0.13 -2.11 6.10 -26.39 -0.16 -2.27 16 13 C -0.11 -2.17 5.10 -26.69 -0.14 -2.31 16 14 C 0.04 0.98 2.25 -91.67 -0.21 0.78 16 15 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 16 C -0.52 -14.23 8.56 -34.44 -0.29 -14.52 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 19 N -0.88 -26.03 11.39 55.43 0.63 -25.40 16 20 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 C 0.11 2.80 5.39 -3.73 -0.02 2.78 16 25 H 0.05 0.55 6.34 -51.93 -0.33 0.22 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.97 7.82 -51.93 -0.41 0.56 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.56 6.54 -51.93 -0.34 0.22 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.77 6.34 -51.93 -0.33 0.44 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.54 6.54 -51.93 -0.34 0.20 16 36 H 0.07 0.92 6.20 -51.93 -0.32 0.59 16 37 H 0.07 0.99 5.98 -51.93 -0.31 0.68 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.79 5.93 -51.93 -0.31 0.48 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.12 3.56 5.12 -51.93 -0.27 3.29 16 46 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 351.12 15.07 5.29 5.29 Total: -1.00 -32.55 351.12 -8.48 -41.03 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -7.99 Total: 0.71 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -0.15 Total: -5.40 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.12 Total: -38.23 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.73 Total: -19.80 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.55 -8.48 -41.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902074.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.096 kcal (2) G-P(sol) polarization free energy of solvation -32.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds