Wall clock time and date at job start Tue Mar 31 2020 05:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47261 * 2 1 4 4 C 1.52993 * 109.47172 * 305.00542 * 3 2 1 5 5 C 1.52998 * 109.47287 * 184.99707 * 3 2 1 6 6 O 1.42910 * 109.46736 * 65.00205 * 3 2 1 7 7 C 1.42894 * 113.99681 * 180.02562 * 6 3 2 8 8 C 1.50697 * 109.47023 * 179.97438 * 7 6 3 9 9 O 1.21288 * 119.99933 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00489 * 180.02562 * 8 7 6 11 11 C 1.46957 * 120.64915 * 359.81927 * 10 8 7 12 12 C 1.53197 * 108.89063 * 233.53185 * 11 10 8 13 13 C 1.53040 * 109.31110 * 305.44560 * 12 11 10 14 14 C 1.53044 * 109.53662 * 61.36306 * 13 12 11 15 15 H 1.08997 * 109.49691 * 58.58900 * 14 13 12 16 16 C 1.50702 * 109.52456 * 178.66800 * 14 13 12 17 17 H 1.07999 * 119.99626 * 359.84978 * 16 14 13 18 18 C 1.37867 * 120.00164 * 179.85610 * 16 14 13 19 19 N 1.31511 * 120.00366 * 359.97438 * 18 16 14 20 20 Si 1.86805 * 119.99948 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47303 * 89.99995 * 20 18 16 22 22 H 1.48504 * 109.47096 * 209.99839 * 20 18 16 23 23 H 1.48502 * 109.47220 * 329.99500 * 20 18 16 24 24 C 1.46926 * 120.63278 * 180.02562 * 10 8 7 25 25 H 1.09002 * 109.46786 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46530 * 299.99577 * 1 2 3 27 27 H 1.08993 * 109.47205 * 59.99754 * 1 2 3 28 28 H 1.08997 * 109.47228 * 240.00191 * 2 1 3 29 29 H 1.08998 * 109.47597 * 120.00493 * 2 1 3 30 30 H 1.09002 * 109.47462 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.46951 * 299.99508 * 4 3 2 32 32 H 1.09004 * 109.47496 * 59.99477 * 4 3 2 33 33 H 1.08996 * 109.47503 * 300.00218 * 5 3 2 34 34 H 1.09000 * 109.46450 * 60.00742 * 5 3 2 35 35 H 1.09002 * 109.46816 * 179.97438 * 5 3 2 36 36 H 1.09004 * 109.47317 * 60.00115 * 7 6 3 37 37 H 1.08997 * 109.47417 * 299.99624 * 7 6 3 38 38 H 1.09001 * 109.46843 * 113.75181 * 11 10 8 39 39 H 1.08998 * 109.59977 * 353.39397 * 11 10 8 40 40 H 1.08995 * 109.50005 * 185.49506 * 12 11 10 41 41 H 1.08996 * 109.49270 * 65.39471 * 12 11 10 42 42 H 1.08994 * 109.45892 * 301.34445 * 13 12 11 43 43 H 1.09001 * 109.45142 * 181.37673 * 13 12 11 44 44 H 0.97005 * 120.00627 * 180.02562 * 19 18 16 45 45 H 1.09002 * 109.58861 * 6.60537 * 24 10 8 46 46 H 1.08996 * 109.58519 * 246.32428 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4299 2.1991 -1.1815 5 6 3.5649 1.4443 -0.1256 6 8 1.6620 2.0813 1.2212 7 6 2.0914 3.4404 1.3232 8 6 1.6403 4.0120 2.6426 9 8 1.0132 3.3231 3.4193 10 7 1.9336 5.2887 2.9596 11 6 2.6960 6.1350 2.0310 12 6 3.9009 6.7236 2.7717 13 6 3.4170 7.4484 4.0297 14 6 2.7190 6.4517 4.9580 15 1 3.4115 5.6516 5.2194 16 6 2.2715 7.1589 6.2113 17 1 2.4674 8.2137 6.3352 18 6 1.6121 6.4594 7.1995 19 7 1.3732 5.1750 7.0485 20 14 1.0581 7.3360 8.7533 21 1 -0.3148 7.8676 8.5590 22 1 1.0623 6.3797 9.8894 23 1 1.9863 8.4574 9.0468 24 6 1.5012 5.8599 4.2424 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.7929 3.2269 -1.1813 31 1 1.7183 1.7118 -2.1129 32 1 0.3436 2.1978 -1.0919 33 1 3.9995 0.9053 0.7161 34 1 3.8531 0.9571 -1.0571 35 1 3.9281 2.4720 -0.1261 36 1 1.6574 4.0207 0.5089 37 1 3.1787 3.4836 1.2609 38 1 2.0594 6.9425 1.6693 39 1 3.0419 5.5349 1.1894 40 1 4.4184 7.4292 2.1217 41 1 4.5822 5.9209 3.0536 42 1 2.7166 8.2349 3.7489 43 1 4.2701 7.8890 4.5456 44 1 0.9090 4.6829 7.7436 45 1 1.0588 5.0782 4.8599 46 1 0.7658 6.6443 4.0637 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597902075.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:55 Heat of formation + Delta-G solvation = -98.258082 kcal Electronic energy + Delta-G solvation = -23714.281297 eV Core-core repulsion = 20410.467730 eV Total energy + Delta-G solvation = -3303.813567 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.77366 -38.69598 -36.57449 -34.15967 -33.36810 -31.76340 -30.34581 -29.93618 -27.98723 -27.53319 -25.02391 -24.27314 -23.29916 -21.81643 -20.04188 -19.61105 -18.24877 -17.01485 -16.39438 -15.90989 -15.69273 -15.35719 -14.72629 -14.46257 -14.25524 -13.85106 -13.70056 -13.47457 -13.40973 -13.02535 -12.62504 -12.47028 -12.29353 -12.22906 -11.98433 -11.89479 -11.79846 -11.60998 -11.23709 -10.99621 -10.89721 -10.82631 -10.50812 -10.44847 -10.37164 -10.22804 -9.88154 -9.50822 -9.19075 -9.09146 -8.78904 -8.41640 -7.71665 -5.97273 -4.06769 3.22825 3.30001 3.33318 3.39884 3.42001 4.15277 4.44827 4.60828 4.70196 4.84627 5.07799 5.13596 5.22081 5.28689 5.32624 5.34293 5.36448 5.46629 5.47641 5.51650 5.54443 5.62807 5.65149 5.81708 5.89211 5.96249 5.99399 6.06729 6.15065 6.20334 6.30317 6.37143 6.59335 6.67711 6.84866 6.98002 7.11650 7.26021 7.36516 7.66603 7.89395 8.01963 8.27948 8.40829 8.92666 8.99001 9.59059 11.07881 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.024100 B = 0.004118 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.534738 B = 6797.664954 C = 7597.379695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C 0.106 3.894 4 C -0.182 4.182 5 C -0.180 4.180 6 O -0.346 6.346 7 C 0.041 3.959 8 C 0.505 3.495 9 O -0.517 6.517 10 N -0.607 5.607 11 C 0.108 3.892 12 C -0.134 4.134 13 C -0.110 4.110 14 C 0.040 3.960 15 H 0.029 0.971 16 C -0.522 4.522 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.879 5.879 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.114 3.886 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.264 0.736 45 H 0.123 0.877 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.264 -4.708 -18.184 19.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C 0.067 3.933 4 C -0.239 4.239 5 C -0.237 4.237 6 O -0.264 6.264 7 C -0.039 4.039 8 C 0.291 3.709 9 O -0.392 6.392 10 N -0.342 5.342 11 C -0.015 4.015 12 C -0.172 4.172 13 C -0.148 4.148 14 C 0.021 3.979 15 H 0.047 0.953 16 C -0.561 4.561 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.517 5.517 20 Si 0.720 3.280 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.006 4.006 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.141 0.859 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.719 -5.351 -17.513 18.513 hybrid contribution -0.018 0.726 0.536 0.903 sum 2.701 -4.625 -16.977 17.801 Atomic orbital electron populations 1.21809 0.95223 1.01349 1.02736 1.21469 0.96928 0.93501 1.02424 1.21575 0.93398 0.93578 0.84762 1.22508 1.02449 1.00636 0.98286 1.22447 0.95993 1.02587 1.02719 1.88129 1.77826 1.23212 1.37251 1.22328 0.99584 0.84977 0.96976 1.20070 0.81026 0.82163 0.87637 1.90733 1.39338 1.58323 1.50777 1.48469 1.54510 1.10639 1.20625 1.21647 0.93623 0.94491 0.91771 1.21951 0.96862 0.99996 0.98437 1.21621 0.99698 0.98766 0.94712 1.18966 0.92859 0.93786 0.92336 0.95326 1.21067 1.38057 0.95686 1.01277 0.92363 1.25057 0.95768 0.94812 0.98378 1.69888 1.40670 1.07043 1.34078 0.86594 0.79036 0.79403 0.82969 1.20638 1.21198 1.19945 1.22276 0.98527 0.99303 0.80507 0.93044 0.91369 0.92731 0.90949 0.90985 0.92329 0.91612 0.91141 0.91477 0.91593 0.92163 0.90978 0.90831 0.91911 0.91552 0.92182 0.92131 0.93154 0.92994 0.92599 0.85920 0.93997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.32 37.16 0.35 -1.32 16 2 C -0.11 -1.12 5.23 -26.73 -0.14 -1.26 16 3 C 0.11 1.23 0.82 -90.62 -0.07 1.15 16 4 C -0.18 -1.73 7.76 37.15 0.29 -1.45 16 5 C -0.18 -1.78 8.25 37.16 0.31 -1.47 16 6 O -0.35 -5.60 9.05 -55.14 -0.50 -6.10 16 7 C 0.04 0.63 3.96 36.00 0.14 0.78 16 8 C 0.51 10.57 7.78 -10.99 -0.09 10.49 16 9 O -0.52 -13.47 15.91 -14.36 -0.23 -13.70 16 10 N -0.61 -12.32 2.98 -172.77 -0.51 -12.83 16 11 C 0.11 1.65 6.34 -3.69 -0.02 1.63 16 12 C -0.13 -2.11 6.08 -26.61 -0.16 -2.27 16 13 C -0.11 -2.17 5.11 -26.69 -0.14 -2.31 16 14 C 0.04 0.99 2.25 -91.67 -0.21 0.78 16 15 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 16 C -0.52 -14.23 8.56 -34.44 -0.30 -14.53 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 19 N -0.88 -26.05 11.39 55.43 0.63 -25.42 16 20 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.11 2.80 5.39 -3.73 -0.02 2.78 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.92 7.82 -51.93 -0.41 0.52 16 27 H 0.05 0.52 6.34 -51.93 -0.33 0.19 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.53 6.54 -51.93 -0.34 0.19 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.71 6.35 -51.93 -0.33 0.38 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.57 6.55 -51.93 -0.34 0.23 16 36 H 0.07 0.92 6.22 -51.93 -0.32 0.60 16 37 H 0.07 0.98 5.96 -51.93 -0.31 0.67 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.79 5.94 -51.93 -0.31 0.48 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.12 3.55 5.12 -51.93 -0.27 3.29 16 46 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 351.10 15.07 5.29 5.29 Total: -1.00 -32.57 351.10 -8.48 -41.06 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -7.99 Total: 0.65 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -0.15 Total: -5.35 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.12 Total: -38.25 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.73 Total: -19.80 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.57 -8.48 -41.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902075.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.201 kcal (2) G-P(sol) polarization free energy of solvation -32.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds